Wall clock time and date at job start Wed Apr 1 2020 04:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52992 * 109.47401 * 2 1 4 4 H 1.08997 * 109.47236 * 174.54194 * 3 2 1 5 5 C 1.50706 * 109.47491 * 54.54413 * 3 2 1 6 6 H 1.08000 * 119.99619 * 275.89773 * 5 3 2 7 7 C 1.37874 * 119.99979 * 95.89220 * 5 3 2 8 8 N 1.31516 * 120.00062 * 189.76626 * 7 5 3 9 9 Si 1.86798 * 119.99973 * 9.76627 * 7 5 3 10 10 H 1.48500 * 109.47271 * 86.23807 * 9 7 5 11 11 H 1.48508 * 109.47027 * 206.23709 * 9 7 5 12 12 H 1.48498 * 109.47175 * 326.22947 * 9 7 5 13 13 N 1.46894 * 109.47096 * 294.54380 * 3 2 1 14 14 C 1.46976 * 111.00448 * 76.39392 * 13 3 2 15 15 C 1.53404 * 109.65920 * 165.11318 * 14 13 3 16 16 N 1.46517 * 108.23763 * 49.66183 * 15 14 13 17 17 C 1.36041 * 128.67200 * 163.60796 * 16 15 14 18 18 C 1.34933 * 106.64268 * 180.45367 * 17 16 15 19 19 C 1.50700 * 125.95382 * 179.67051 * 18 17 16 20 20 N 1.46900 * 109.47274 * 95.00000 * 19 18 17 21 21 C 1.46959 * 110.99883 * 293.79875 * 20 19 18 22 22 C 1.53048 * 109.36534 * 176.80977 * 21 20 19 23 23 N 1.46957 * 109.36480 * 58.40156 * 22 21 20 24 24 C 1.46895 * 111.00000 * 176.80623 * 23 22 21 25 25 C 1.46950 * 110.88121 * 300.68002 * 23 22 21 26 26 C 1.46957 * 111.00289 * 169.99911 * 20 19 18 27 27 N 1.34372 * 108.09385 * 359.54457 * 18 17 16 28 28 C 1.29888 * 109.19824 * 0.37993 * 27 18 17 29 29 C 1.47330 * 111.00168 * 312.20609 * 13 3 2 30 30 H 1.09003 * 109.46351 * 81.63361 * 1 2 3 31 31 H 1.08996 * 109.47220 * 201.63603 * 1 2 3 32 32 H 1.09000 * 109.46508 * 321.64321 * 1 2 3 33 33 H 1.09002 * 109.47395 * 239.99362 * 2 1 3 34 34 H 1.09010 * 109.46397 * 119.99947 * 2 1 3 35 35 H 0.96993 * 120.00187 * 179.97438 * 8 7 5 36 36 H 1.09007 * 109.43603 * 285.17488 * 14 13 3 37 37 H 1.09005 * 109.44147 * 45.08975 * 14 13 3 38 38 H 1.09006 * 109.71650 * 289.96891 * 15 14 13 39 39 H 1.09004 * 109.70514 * 169.34612 * 15 14 13 40 40 H 1.07999 * 126.67746 * 0.19027 * 17 16 15 41 41 H 1.09010 * 109.47336 * 214.99728 * 19 18 17 42 42 H 1.09000 * 109.47176 * 334.99688 * 19 18 17 43 43 H 1.09002 * 109.49106 * 296.78069 * 21 20 19 44 44 H 1.09006 * 109.48524 * 56.84355 * 21 20 19 45 45 H 1.09001 * 109.49201 * 298.43499 * 22 21 20 46 46 H 1.08998 * 109.50773 * 178.38189 * 22 21 20 47 47 H 1.09006 * 109.47047 * 183.79606 * 24 23 22 48 48 H 1.08993 * 109.47540 * 303.80498 * 24 23 22 49 49 H 1.09007 * 109.46871 * 63.80418 * 24 23 22 50 50 H 1.08993 * 109.49184 * 299.35234 * 25 23 22 51 51 H 1.09001 * 109.50817 * 179.29666 * 25 23 22 52 52 H 1.09000 * 109.48908 * 303.15645 * 26 20 19 53 53 H 1.09004 * 109.48517 * 63.19781 * 26 20 19 54 54 H 1.09000 * 109.73175 * 54.63470 * 29 13 3 55 55 H 1.08998 * 109.77691 * 293.95167 * 29 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1257 1.4439 0.0977 5 6 1.4306 2.1909 1.1574 6 1 0.4499 2.6324 1.0584 7 6 2.1247 2.3117 2.3424 8 7 1.5251 2.7925 3.4097 9 14 3.9169 1.7927 2.4322 10 1 4.7814 2.9225 2.0060 11 1 4.2526 1.4117 3.8277 12 1 4.1415 0.6314 1.5345 13 7 1.6610 2.0958 -1.2598 14 6 0.2377 2.4626 -1.2555 15 6 -0.0434 3.4533 -2.3925 16 7 0.5295 2.9095 -3.6266 17 6 0.2755 3.2714 -4.9132 18 6 1.0364 2.4776 -5.6952 19 6 1.0868 2.5055 -7.2011 20 7 2.2046 3.3526 -7.6381 21 6 1.9748 4.7574 -7.2730 22 6 3.1939 5.5917 -7.6733 23 7 3.4233 5.4569 -9.1186 24 6 4.5410 6.3041 -9.5555 25 6 3.6531 4.0521 -9.4837 26 6 2.4341 3.2177 -9.0833 27 7 1.7434 1.6597 -4.8973 28 6 1.4453 1.9094 -3.6580 29 6 1.9874 1.2431 -2.4160 30 1 -0.3632 0.1495 -1.0168 31 1 -0.3633 -0.9552 0.3789 32 1 -0.3632 0.8059 0.6377 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8901 35 1 2.0134 2.8772 4.2435 36 1 -0.3680 1.5673 -1.3963 37 1 -0.0149 2.9250 -0.3013 38 1 0.4180 4.4144 -2.1653 39 1 -1.1194 3.5805 -2.5116 40 1 -0.4060 4.0410 -5.2443 41 1 1.2291 1.4929 -7.5788 42 1 0.1516 2.9097 -7.5886 43 1 1.0927 5.1290 -7.7944 44 1 1.8201 4.8328 -6.1966 45 1 4.0708 5.2376 -7.1314 46 1 3.0142 6.6388 -7.4298 47 1 4.6461 6.2370 -10.6384 48 1 4.3452 7.3383 -9.2728 49 1 5.4613 5.9653 -9.0795 50 1 4.5352 3.6805 -8.9623 51 1 3.8080 3.9764 -10.5600 52 1 2.6141 2.1707 -9.3268 53 1 1.5570 3.5715 -9.6253 54 1 1.5258 0.2633 -2.2926 55 1 3.0686 1.1328 -2.4994 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255168053.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:52 Heat of formation + Delta-G solvation = 91.347264 kcal Electronic energy + Delta-G solvation = -31910.689790 eV Core-core repulsion = 27983.929970 eV Total energy + Delta-G solvation = -3926.759820 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.238 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.25884 -40.25675 -39.78671 -36.70723 -35.49110 -34.45630 -33.11230 -31.99759 -31.62334 -30.40174 -29.90188 -28.71027 -26.74778 -25.82314 -25.27998 -24.47284 -23.79786 -23.13897 -21.61900 -20.79907 -20.58891 -19.96250 -18.91191 -17.89605 -17.39291 -17.02500 -16.60178 -16.14291 -16.09810 -15.93910 -15.78174 -15.70151 -15.49739 -15.31221 -15.23107 -15.01214 -14.81516 -14.36944 -14.25775 -13.62516 -13.60773 -13.41771 -13.26636 -13.22530 -12.94866 -12.83969 -12.81105 -12.62844 -12.51016 -12.40638 -12.23038 -12.07452 -12.03729 -11.79587 -11.74412 -11.46292 -11.35430 -10.95342 -10.83154 -10.53400 -10.44891 -9.43159 -9.29955 -9.10422 -8.89081 -8.24722 -6.26115 1.14143 1.36219 1.41600 1.46969 1.93486 2.04636 2.37104 2.86109 2.96558 3.14364 3.22019 3.47621 3.75965 3.86345 3.92043 4.05462 4.10459 4.15517 4.23169 4.27173 4.31715 4.34151 4.39163 4.42886 4.45943 4.49804 4.54460 4.56785 4.60924 4.61606 4.66549 4.73530 4.83609 4.84961 4.88771 4.91058 4.97893 4.99173 5.01932 5.05249 5.08567 5.19490 5.24981 5.32333 5.47295 5.53490 5.65419 5.83614 5.96895 5.97311 6.05097 6.15659 6.21475 6.23690 6.37830 6.57533 6.78906 7.25491 7.38492 8.88173 Molecular weight = 347.24amu Principal moments of inertia in cm(-1) A = 0.016569 B = 0.002429 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.496921 B =11523.697846 C =12165.587924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.151 4.151 3 C 0.184 3.816 4 H 0.038 0.962 5 C -0.496 4.496 6 H 0.070 0.930 7 C 0.026 3.974 8 N -0.937 5.937 9 Si 0.924 3.076 10 H -0.277 1.277 11 H -0.293 1.293 12 H -0.249 1.249 13 N -0.534 5.534 14 C 0.023 3.977 15 C 0.110 3.890 16 N -0.446 5.446 17 C -0.042 4.042 18 C -0.014 4.014 19 C 0.154 3.846 20 N -0.552 5.552 21 C 0.065 3.935 22 C 0.060 3.940 23 N -0.551 5.551 24 C 0.025 3.975 25 C 0.058 3.942 26 C 0.061 3.939 27 N -0.503 5.503 28 C 0.198 3.802 29 C 0.134 3.866 30 H 0.054 0.946 31 H 0.047 0.953 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.046 0.954 35 H 0.264 0.736 36 H 0.059 0.941 37 H 0.106 0.894 38 H 0.086 0.914 39 H 0.117 0.883 40 H 0.200 0.800 41 H 0.081 0.919 42 H 0.065 0.935 43 H 0.048 0.952 44 H 0.067 0.933 45 H 0.020 0.980 46 H 0.088 0.912 47 H 0.081 0.919 48 H 0.074 0.926 49 H 0.020 0.980 50 H 0.026 0.974 51 H 0.097 0.903 52 H 0.087 0.913 53 H 0.048 0.952 54 H 0.068 0.932 55 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.735 3.105 -24.634 24.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.191 4.191 3 C 0.077 3.923 4 H 0.056 0.944 5 C -0.534 4.534 6 H 0.088 0.912 7 C -0.172 4.172 8 N -0.577 5.577 9 Si 0.751 3.249 10 H -0.203 1.203 11 H -0.219 1.219 12 H -0.173 1.173 13 N -0.259 5.259 14 C -0.105 4.105 15 C -0.012 4.012 16 N -0.128 5.128 17 C -0.177 4.177 18 C -0.144 4.144 19 C 0.026 3.974 20 N -0.278 5.278 21 C -0.063 4.063 22 C -0.069 4.069 23 N -0.276 5.276 24 C -0.123 4.123 25 C -0.070 4.070 26 C -0.067 4.067 27 N -0.223 5.223 28 C -0.065 4.065 29 C 0.005 3.995 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.124 0.876 38 H 0.105 0.895 39 H 0.135 0.865 40 H 0.216 0.784 41 H 0.099 0.901 42 H 0.083 0.917 43 H 0.066 0.934 44 H 0.085 0.915 45 H 0.038 0.962 46 H 0.106 0.894 47 H 0.100 0.900 48 H 0.093 0.907 49 H 0.039 0.961 50 H 0.044 0.956 51 H 0.116 0.884 52 H 0.105 0.895 53 H 0.066 0.934 54 H 0.086 0.914 55 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.956 3.079 -24.622 24.832 hybrid contribution 0.132 -0.188 1.289 1.309 sum -0.823 2.891 -23.333 23.525 Atomic orbital electron populations 1.21949 0.95568 1.01544 1.00549 1.22294 0.97349 0.99240 1.00185 1.19714 0.95799 0.90235 0.86594 0.94406 1.21193 1.03485 1.33557 0.95126 0.91249 1.25621 1.01217 0.94972 0.95431 1.70003 1.38054 1.48152 1.01458 0.86093 0.82161 0.79762 0.76933 1.20256 1.21918 1.17322 1.62456 1.18642 1.42544 1.02235 1.22999 0.89501 0.98705 0.99262 1.22343 1.00102 0.98259 0.80454 1.45512 1.32110 1.27864 1.07279 1.22696 1.07226 1.05294 0.82514 1.20796 0.99561 0.97860 0.96180 1.20107 0.92337 0.97973 0.87026 1.62008 1.42378 1.07758 1.15641 1.22050 0.96809 0.87174 1.00238 1.22128 0.96932 1.00116 0.87702 1.62239 1.42187 1.08385 1.14739 1.22400 0.90770 0.97576 1.01582 1.22196 0.96510 0.87153 1.01174 1.22164 0.97582 1.00380 0.86561 1.69743 1.25473 1.27187 0.99915 1.23233 0.95065 0.93696 0.94540 1.20684 1.00708 0.94190 0.83937 0.92744 0.93395 0.92357 0.92246 0.93519 0.92661 0.92296 0.87641 0.89541 0.86453 0.78358 0.90060 0.91747 0.93383 0.91466 0.96163 0.89398 0.89997 0.90692 0.96146 0.95564 0.88443 0.89502 0.93376 0.91411 0.89314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.86 8.26 71.98 0.59 -4.27 16 2 C -0.15 -5.72 5.20 30.59 0.16 -5.56 16 3 C 0.18 7.80 2.38 44.17 0.11 7.91 16 4 H 0.04 1.71 5.02 -2.39 -0.01 1.70 16 5 C -0.50 -24.70 6.97 25.60 0.18 -24.52 16 6 H 0.07 3.66 5.01 -2.91 -0.01 3.65 16 7 C 0.03 1.42 5.47 84.65 0.46 1.88 16 8 N -0.94 -54.22 13.96 21.45 0.30 -53.92 16 9 Si 0.92 42.42 27.20 68.60 1.87 44.29 16 10 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 11 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 12 H -0.25 -10.69 6.55 99.48 0.65 -10.03 16 13 N -0.53 -20.27 4.76 -877.14 -4.18 -24.45 16 14 C 0.02 0.76 4.04 86.42 0.35 1.11 16 15 C 0.11 2.97 7.25 86.51 0.63 3.60 16 16 N -0.45 -13.16 3.14 -513.63 -1.61 -14.77 16 17 C -0.04 -1.06 10.47 83.28 0.87 -0.19 16 18 C -0.01 -0.39 5.86 41.41 0.24 -0.15 16 19 C 0.15 3.40 5.50 85.56 0.47 3.87 16 20 N -0.55 -12.39 4.70 -900.24 -4.23 -16.62 16 21 C 0.07 1.37 5.40 86.31 0.47 1.83 16 22 C 0.06 1.20 5.62 86.31 0.49 1.69 16 23 N -0.55 -9.87 4.97 -921.97 -4.58 -14.45 16 24 C 0.02 0.35 9.60 127.69 1.23 1.57 16 25 C 0.06 0.99 5.62 86.31 0.49 1.47 16 26 C 0.06 1.07 5.61 86.31 0.48 1.55 16 27 N -0.50 -17.56 11.24 -175.58 -1.97 -19.53 16 28 C 0.20 6.79 7.76 138.21 1.07 7.86 16 29 C 0.13 4.67 5.33 85.57 0.46 5.13 16 30 H 0.05 1.72 5.42 -2.39 -0.01 1.71 16 31 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.06 2.32 5.67 -2.39 -0.01 2.30 16 33 H 0.06 2.01 5.85 -2.39 -0.01 2.00 16 34 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 35 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 36 H 0.06 1.90 4.46 -2.38 -0.01 1.89 16 37 H 0.11 4.03 4.94 -2.38 -0.01 4.02 16 38 H 0.09 2.37 8.14 -2.38 -0.02 2.35 16 39 H 0.12 2.37 8.14 -2.39 -0.02 2.35 16 40 H 0.20 3.50 8.06 -2.91 -0.02 3.47 16 41 H 0.08 1.83 8.03 -2.38 -0.02 1.81 16 42 H 0.06 1.14 8.12 -2.39 -0.02 1.12 16 43 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.07 1.60 6.37 -2.38 -0.02 1.59 16 45 H 0.02 0.49 8.14 -2.39 -0.02 0.47 16 46 H 0.09 1.54 8.13 -2.39 -0.02 1.52 16 47 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 48 H 0.07 0.94 8.13 -2.39 -0.02 0.92 16 49 H 0.02 0.31 8.14 -2.38 -0.02 0.29 16 50 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 51 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 52 H 0.09 1.39 8.07 -2.39 -0.02 1.37 16 53 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 54 H 0.07 2.28 5.37 -2.39 -0.01 2.26 16 55 H 0.09 3.15 8.14 -2.39 -0.02 3.13 16 Total: -1.00 -63.23 399.73 -4.85 -68.08 By element: Atomic # 1 Polarization: 25.76 SS G_CDS: 0.82 Total: 26.59 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: 8.74 Total: 4.79 kcal Atomic # 7 Polarization: -127.47 SS G_CDS: -16.28 Total: -143.75 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 1.87 Total: 44.29 kcal Total: -63.23 -4.85 -68.08 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255168053.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.427 kcal (2) G-P(sol) polarization free energy of solvation -63.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds