Wall clock time and date at job start Wed Apr 1 2020 04:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47317 * 2 1 4 4 H 1.08997 * 109.47235 * 181.40936 * 3 2 1 5 5 C 1.50701 * 109.47340 * 301.41545 * 3 2 1 6 6 H 1.08001 * 120.00375 * 120.00020 * 5 3 2 7 7 C 1.37878 * 119.99580 * 299.99567 * 5 3 2 8 8 N 1.31518 * 120.00330 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00040 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47201 * 89.99909 * 9 7 5 11 11 H 1.48498 * 109.47231 * 210.00008 * 9 7 5 12 12 H 1.48503 * 109.46974 * 330.00286 * 9 7 5 13 13 N 1.46903 * 109.46747 * 61.41291 * 3 2 1 14 14 C 1.46419 * 111.00159 * 57.38128 * 13 3 2 15 15 C 1.53201 * 109.69424 * 158.39627 * 14 13 3 16 16 C 1.50690 * 108.82499 * 271.84533 * 15 14 13 17 17 N 1.30076 * 127.74254 * 225.65257 * 16 15 14 18 18 N 1.28816 * 109.52833 * 181.22144 * 17 16 15 19 19 C 1.30738 * 109.71600 * 0.13135 * 18 17 16 20 20 C 1.50702 * 126.43207 * 179.46723 * 19 18 17 21 21 N 1.46896 * 109.46786 * 269.69075 * 20 19 18 22 22 C 1.46846 * 110.99920 * 294.20948 * 21 20 19 23 23 C 1.53039 * 109.52572 * 174.16544 * 22 21 20 24 24 C 1.53119 * 109.27852 * 59.17516 * 23 22 21 25 25 C 1.53116 * 109.16358 * 302.34928 * 24 23 22 26 26 C 1.46851 * 110.99762 * 170.00279 * 21 20 19 27 27 N 1.34987 * 107.13042 * 359.20109 * 19 18 17 28 28 C 1.46300 * 127.74173 * 181.81609 * 27 19 18 29 29 C 1.46705 * 110.99796 * 182.96790 * 13 3 2 30 30 H 1.09002 * 109.46792 * 305.46242 * 1 2 3 31 31 H 1.08996 * 109.47608 * 65.45731 * 1 2 3 32 32 H 1.09000 * 109.47497 * 185.46698 * 1 2 3 33 33 H 1.09002 * 109.46671 * 240.00518 * 2 1 3 34 34 H 1.09001 * 109.47331 * 120.00610 * 2 1 3 35 35 H 0.96991 * 120.00087 * 180.02562 * 8 7 5 36 36 H 1.08999 * 109.43560 * 278.46337 * 14 13 3 37 37 H 1.09003 * 109.43411 * 38.32675 * 14 13 3 38 38 H 1.08993 * 109.57984 * 31.65576 * 15 14 13 39 39 H 1.09006 * 109.57561 * 152.04983 * 15 14 13 40 40 H 1.09000 * 109.47049 * 149.68659 * 20 19 18 41 41 H 1.09006 * 109.47013 * 29.69085 * 20 19 18 42 42 H 1.09003 * 109.46235 * 294.17493 * 22 21 20 43 43 H 1.09001 * 109.46295 * 54.14606 * 22 21 20 44 44 H 1.09003 * 109.50049 * 299.24090 * 23 22 21 45 45 H 1.09001 * 109.50650 * 179.11993 * 23 22 21 46 46 H 1.09006 * 109.52471 * 182.44258 * 24 23 22 47 47 H 1.09005 * 109.57707 * 62.28849 * 24 23 22 48 48 H 1.09005 * 109.50482 * 297.71720 * 25 24 23 49 49 H 1.09000 * 109.50420 * 177.59655 * 25 24 23 50 50 H 1.08998 * 109.46305 * 305.84941 * 26 21 20 51 51 H 1.08992 * 109.46580 * 65.82281 * 26 21 20 52 52 H 1.09001 * 109.51842 * 326.92901 * 28 27 19 53 53 H 1.09003 * 109.51440 * 87.04230 * 28 27 19 54 54 H 1.08998 * 109.41102 * 176.71518 * 29 13 3 55 55 H 1.08994 * 109.41678 * 56.92977 * 29 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1297 1.4425 -0.0253 5 6 1.5093 2.1630 -1.2125 6 1 0.8910 3.0402 -1.0918 7 6 1.8132 1.7023 -2.4760 8 7 2.5658 0.6338 -2.6231 9 14 1.1560 2.5957 -3.9791 10 1 2.1251 3.6405 -4.3970 11 1 0.9651 1.6259 -5.0873 12 1 -0.1447 3.2312 -3.6478 13 7 1.5784 2.1249 1.2162 14 6 2.0243 1.4159 2.4172 15 6 2.0182 2.3726 3.6137 16 6 3.3495 3.0753 3.6813 17 7 4.0946 3.2702 4.7295 18 7 5.1471 3.9321 4.3926 19 6 5.1148 4.1897 3.1113 20 6 6.1503 4.9518 2.3252 21 7 5.8064 6.3800 2.3182 22 6 4.5576 6.6169 1.5828 23 6 4.1548 8.0870 1.7191 24 6 5.2733 8.9715 1.1612 25 6 6.5737 8.6705 1.9115 26 6 6.9064 7.1834 1.7696 27 7 3.9826 3.6397 2.6236 28 6 3.5186 3.6273 1.2362 29 6 1.9901 3.5331 1.2172 30 1 -0.3633 0.5962 0.8371 31 1 -0.3634 0.4268 -0.9347 32 1 -0.3634 -1.0230 0.0979 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 2.7799 0.3099 -3.5119 36 1 1.3517 0.5816 2.6165 37 1 3.0344 1.0372 2.2608 38 1 1.2230 3.1077 3.4896 39 1 1.8562 1.8080 4.5320 40 1 6.1760 4.5792 1.3012 41 1 7.1288 4.8160 2.7859 42 1 4.7051 6.3770 0.5298 43 1 3.7695 5.9849 1.9923 44 1 3.9938 8.3242 2.7708 45 1 3.2363 8.2661 1.1603 46 1 5.0096 10.0206 1.2957 47 1 5.4086 8.7632 0.0998 48 1 6.4506 8.9168 2.9662 49 1 7.3833 9.2664 1.4901 50 1 7.8241 6.9630 2.3147 51 1 7.0428 6.9409 0.7158 52 1 3.8331 4.5447 0.7388 53 1 3.9437 2.7678 0.7178 54 1 1.5856 4.0281 2.1001 55 1 1.6080 4.0229 0.3216 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255172956.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:41 Heat of formation + Delta-G solvation = 78.321020 kcal Electronic energy + Delta-G solvation = -33355.069350 eV Core-core repulsion = 29427.744670 eV Total energy + Delta-G solvation = -3927.324680 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.238 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -44.41133 -40.09384 -40.00076 -36.46511 -35.65503 -34.55019 -33.45408 -32.67499 -31.82125 -31.18783 -29.09961 -28.21272 -27.32999 -26.20303 -24.91510 -24.44069 -23.98776 -22.49132 -21.95951 -21.54819 -20.68158 -20.48292 -18.21961 -18.04403 -17.71846 -17.16043 -16.89266 -16.55477 -16.05854 -15.91840 -15.76429 -15.66790 -15.32959 -15.18203 -14.70662 -14.40840 -14.22386 -14.13843 -13.98936 -13.82226 -13.77621 -13.49343 -13.32697 -13.06738 -12.85507 -12.79934 -12.72244 -12.61245 -12.43633 -12.40122 -12.18974 -11.97651 -11.88460 -11.65848 -11.56613 -11.42169 -11.36933 -11.34710 -11.25251 -11.11765 -10.71231 -10.46314 -10.11745 -9.44600 -8.96581 -8.06687 -6.15883 0.73019 1.42170 1.45048 1.47788 1.54337 1.72763 2.43891 2.83059 3.07961 3.18221 3.26008 3.30290 3.60332 3.65750 3.75671 3.86463 3.91197 3.97401 4.01546 4.05644 4.21309 4.27101 4.35096 4.39562 4.42377 4.48869 4.54299 4.61359 4.69383 4.74804 4.79543 4.80454 4.84846 4.85449 4.88314 4.89426 4.95773 4.99987 5.04063 5.09875 5.14061 5.18913 5.25169 5.30559 5.44167 5.46020 5.50721 5.73604 5.78141 5.81956 5.88175 5.91131 6.01727 6.28865 6.35173 6.66817 6.96228 7.52506 7.66823 8.98494 Molecular weight = 347.24amu Principal moments of inertia in cm(-1) A = 0.010029 B = 0.004011 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2791.131848 B = 6979.967720 C = 8916.929652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.109 4.109 3 C 0.226 3.774 4 H -0.031 1.031 5 C -0.500 4.500 6 H 0.065 0.935 7 C 0.022 3.978 8 N -0.918 5.918 9 Si 0.943 3.057 10 H -0.279 1.279 11 H -0.294 1.294 12 H -0.267 1.267 13 N -0.527 5.527 14 C 0.063 3.937 15 C -0.033 4.033 16 C 0.180 3.820 17 N -0.328 5.328 18 N -0.318 5.318 19 C 0.182 3.818 20 C 0.146 3.854 21 N -0.538 5.538 22 C 0.048 3.952 23 C -0.112 4.112 24 C -0.120 4.120 25 C -0.112 4.112 26 C 0.054 3.946 27 N -0.458 5.458 28 C 0.069 3.931 29 C 0.057 3.943 30 H 0.059 0.941 31 H 0.033 0.967 32 H 0.033 0.967 33 H 0.058 0.942 34 H 0.025 0.975 35 H 0.258 0.742 36 H 0.096 0.904 37 H 0.007 0.993 38 H 0.114 0.886 39 H 0.120 0.880 40 H 0.058 0.942 41 H 0.119 0.881 42 H 0.038 0.962 43 H 0.056 0.944 44 H 0.060 0.940 45 H 0.075 0.925 46 H 0.076 0.924 47 H 0.062 0.938 48 H 0.064 0.936 49 H 0.087 0.913 50 H 0.088 0.912 51 H 0.040 0.960 52 H 0.107 0.893 53 H 0.074 0.926 54 H 0.089 0.911 55 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.769 12.615 6.138 14.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.148 4.148 3 C 0.120 3.880 4 H -0.014 1.014 5 C -0.538 4.538 6 H 0.084 0.916 7 C -0.177 4.177 8 N -0.558 5.558 9 Si 0.770 3.230 10 H -0.205 1.205 11 H -0.220 1.220 12 H -0.191 1.191 13 N -0.250 5.250 14 C -0.066 4.066 15 C -0.072 4.072 16 C -0.088 4.088 17 N -0.168 5.168 18 N -0.159 5.159 19 C -0.087 4.087 20 C 0.016 3.984 21 N -0.264 5.264 22 C -0.080 4.080 23 C -0.150 4.150 24 C -0.157 4.157 25 C -0.150 4.150 26 C -0.073 4.073 27 N -0.149 5.149 28 C -0.054 4.054 29 C -0.072 4.072 30 H 0.078 0.922 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.077 0.923 34 H 0.043 0.957 35 H 0.067 0.933 36 H 0.115 0.885 37 H 0.026 0.974 38 H 0.132 0.868 39 H 0.138 0.862 40 H 0.076 0.924 41 H 0.137 0.863 42 H 0.056 0.944 43 H 0.074 0.926 44 H 0.079 0.921 45 H 0.093 0.907 46 H 0.095 0.905 47 H 0.081 0.919 48 H 0.083 0.917 49 H 0.105 0.895 50 H 0.106 0.894 51 H 0.058 0.942 52 H 0.125 0.875 53 H 0.092 0.908 54 H 0.107 0.893 55 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 3.748 12.601 7.886 15.331 hybrid contribution 0.566 -0.440 -3.200 3.279 sum 4.315 12.161 4.686 13.728 Atomic orbital electron populations 1.21327 0.95519 0.98601 1.01135 1.21447 0.96683 0.97594 0.99067 1.19090 0.90963 0.91614 0.86366 1.01399 1.21251 1.30634 1.11843 0.90075 0.91649 1.25493 0.95497 0.95538 1.01216 1.70007 1.38596 1.24251 1.22933 0.85784 0.79086 0.78300 0.79838 1.20527 1.22023 1.19107 1.61865 1.59647 1.01239 1.02254 1.22106 0.98080 0.97162 0.89205 1.20494 0.87736 0.98256 1.00740 1.25175 0.99729 1.00469 0.83453 1.74043 1.01434 1.16678 1.24621 1.74235 1.16248 1.15177 1.10235 1.24771 0.90722 1.00786 0.92380 1.20370 0.94646 0.86715 0.96628 1.61855 1.04592 1.04456 1.55529 1.22308 0.91714 0.98536 0.95443 1.21546 0.99033 0.92831 1.01617 1.21586 0.94688 0.99898 0.99543 1.21575 0.97977 0.94211 1.01217 1.22219 0.93141 0.93900 0.98013 1.46344 1.17720 1.40464 1.10351 1.22958 1.00500 1.04508 0.77458 1.22496 0.88616 0.91911 1.04210 0.92176 0.94792 0.94836 0.92326 0.95669 0.93322 0.88541 0.97426 0.86786 0.86223 0.92364 0.86320 0.94413 0.92602 0.92144 0.90676 0.90548 0.91942 0.91721 0.89470 0.89359 0.94151 0.87490 0.90799 0.89290 0.87896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.23 9.46 71.98 0.68 -3.55 16 2 C -0.11 -4.73 5.13 30.59 0.16 -4.57 16 3 C 0.23 9.73 1.34 44.17 0.06 9.78 16 4 H -0.03 -1.54 6.11 -2.39 -0.01 -1.55 16 5 C -0.50 -23.25 6.66 25.60 0.17 -23.08 16 6 H 0.07 2.98 6.47 -2.91 -0.02 2.96 16 7 C 0.02 1.06 5.30 84.65 0.45 1.51 16 8 N -0.92 -48.53 11.33 21.45 0.24 -48.29 16 9 Si 0.94 39.76 29.54 68.60 2.03 41.78 16 10 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 11 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 12 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 13 N -0.53 -18.23 3.89 -876.47 -3.41 -21.64 16 14 C 0.06 1.96 4.22 86.46 0.37 2.33 16 15 C -0.03 -0.88 5.59 29.91 0.17 -0.71 16 16 C 0.18 5.87 6.96 138.08 0.96 6.83 16 17 N -0.33 -12.20 12.21 -50.33 -0.61 -12.82 16 18 N -0.32 -11.80 12.23 -50.34 -0.62 -12.42 16 19 C 0.18 5.78 6.66 138.08 0.92 6.70 16 20 C 0.15 3.61 5.25 85.56 0.45 4.06 16 21 N -0.54 -12.15 4.65 -900.92 -4.19 -16.34 16 22 C 0.05 1.07 3.99 86.33 0.34 1.41 16 23 C -0.11 -2.12 6.09 30.65 0.19 -1.93 16 24 C -0.12 -1.81 6.00 30.67 0.18 -1.63 16 25 C -0.11 -1.64 6.09 30.65 0.19 -1.46 16 26 C 0.05 0.92 5.46 86.33 0.47 1.40 16 27 N -0.46 -14.42 2.62 -504.75 -1.32 -15.74 16 28 C 0.07 2.14 5.30 86.47 0.46 2.59 16 29 C 0.06 1.74 5.15 86.39 0.45 2.19 16 30 H 0.06 2.16 7.48 -2.39 -0.02 2.15 16 31 H 0.03 1.45 7.38 -2.39 -0.02 1.43 16 32 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.06 2.95 6.11 -2.39 -0.01 2.93 16 34 H 0.02 1.00 6.79 -2.39 -0.02 0.98 16 35 H 0.26 13.28 8.31 -92.72 -0.77 12.51 16 36 H 0.10 2.80 7.53 -2.39 -0.02 2.78 16 37 H 0.01 0.27 7.55 -2.39 -0.02 0.25 16 38 H 0.11 2.74 6.38 -2.39 -0.02 2.73 16 39 H 0.12 2.75 8.14 -2.38 -0.02 2.73 16 40 H 0.06 1.37 7.94 -2.39 -0.02 1.35 16 41 H 0.12 2.63 7.99 -2.38 -0.02 2.61 16 42 H 0.04 0.84 7.56 -2.39 -0.02 0.82 16 43 H 0.06 1.45 5.32 -2.39 -0.01 1.44 16 44 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 46 H 0.08 0.98 8.14 -2.38 -0.02 0.97 16 47 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 48 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 49 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 50 H 0.09 1.33 8.02 -2.39 -0.02 1.31 16 51 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 52 H 0.11 2.95 5.15 -2.39 -0.01 2.94 16 53 H 0.07 2.75 5.78 -2.39 -0.01 2.74 16 54 H 0.09 2.44 5.58 -2.39 -0.01 2.42 16 55 H 0.10 3.33 6.18 -2.39 -0.01 3.32 16 Total: -1.00 -59.22 395.35 -0.34 -59.56 By element: Atomic # 1 Polarization: 23.13 SS G_CDS: 0.88 Total: 24.01 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: 6.66 Total: 1.88 kcal Atomic # 7 Polarization: -117.33 SS G_CDS: -9.90 Total: -127.24 kcal Atomic # 14 Polarization: 39.76 SS G_CDS: 2.03 Total: 41.78 kcal Total: -59.22 -0.34 -59.56 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255172956.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.883 kcal (2) G-P(sol) polarization free energy of solvation -59.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds