Wall clock time and date at job start Wed Apr 1 2020 04:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47196 * 2 1 4 4 H 1.08998 * 109.46502 * 301.78053 * 3 2 1 5 5 C 1.50696 * 109.47527 * 181.78010 * 3 2 1 6 6 H 1.07995 * 120.00204 * 245.52516 * 5 3 2 7 7 C 1.37880 * 119.99923 * 65.51816 * 5 3 2 8 8 N 1.31510 * 120.00209 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99671 * 180.27901 * 7 5 3 10 10 H 1.48498 * 109.46880 * 269.72316 * 9 7 5 11 11 H 1.48496 * 109.47320 * 29.72648 * 9 7 5 12 12 H 1.48504 * 109.47174 * 149.72741 * 9 7 5 13 13 N 1.46894 * 109.46872 * 61.77646 * 3 2 1 14 14 C 1.46428 * 111.00074 * 196.13731 * 13 3 2 15 15 C 1.53202 * 109.67510 * 268.64286 * 14 13 3 16 16 C 1.50691 * 108.85162 * 271.83027 * 15 14 13 17 17 N 1.30069 * 127.77790 * 226.12219 * 16 15 14 18 18 N 1.28803 * 109.52829 * 181.25849 * 17 16 15 19 19 C 1.30734 * 109.72603 * 359.65012 * 18 17 16 20 20 C 1.50695 * 126.43454 * 179.46379 * 19 18 17 21 21 N 1.46898 * 109.46907 * 270.02069 * 20 19 18 22 22 C 1.46846 * 111.00096 * 294.21153 * 21 20 19 23 23 C 1.53042 * 109.52583 * 174.16467 * 22 21 20 24 24 C 1.53121 * 109.27894 * 59.17278 * 23 22 21 25 25 C 1.53114 * 109.16212 * 302.34972 * 24 23 22 26 26 C 1.46855 * 111.00082 * 170.00007 * 21 20 19 27 27 N 1.34986 * 107.13237 * 359.48084 * 19 18 17 28 28 C 1.46292 * 127.76289 * 181.89256 * 27 19 18 29 29 C 1.46690 * 111.00256 * 70.55295 * 13 3 2 30 30 H 1.08994 * 109.47669 * 55.52786 * 1 2 3 31 31 H 1.09004 * 109.46801 * 175.52980 * 1 2 3 32 32 H 1.08998 * 109.47102 * 295.52142 * 1 2 3 33 33 H 1.09006 * 109.47193 * 239.99982 * 2 1 3 34 34 H 1.09005 * 109.47543 * 120.00173 * 2 1 3 35 35 H 0.97005 * 120.00255 * 179.97438 * 8 7 5 36 36 H 1.08999 * 109.43521 * 28.70203 * 14 13 3 37 37 H 1.08993 * 109.44151 * 148.57856 * 14 13 3 38 38 H 1.09004 * 109.57018 * 31.64160 * 15 14 13 39 39 H 1.08994 * 109.57658 * 152.01780 * 15 14 13 40 40 H 1.08996 * 109.47366 * 30.02288 * 20 19 18 41 41 H 1.08997 * 109.47160 * 150.02250 * 20 19 18 42 42 H 1.09008 * 109.46203 * 294.17167 * 22 21 20 43 43 H 1.08993 * 109.46525 * 54.14395 * 22 21 20 44 44 H 1.09003 * 109.50098 * 299.23798 * 23 22 21 45 45 H 1.08995 * 109.50714 * 179.11871 * 23 22 21 46 46 H 1.09002 * 109.52407 * 182.44316 * 24 23 22 47 47 H 1.09002 * 109.57284 * 62.29200 * 24 23 22 48 48 H 1.08998 * 109.50688 * 297.71136 * 25 24 23 49 49 H 1.09006 * 109.50375 * 177.59523 * 25 24 23 50 50 H 1.09000 * 109.45984 * 305.85666 * 26 21 20 51 51 H 1.09005 * 109.45765 * 65.82098 * 26 21 20 52 52 H 1.08999 * 109.51086 * 326.84766 * 28 27 19 53 53 H 1.09007 * 109.51108 * 86.95467 * 28 27 19 54 54 H 1.09005 * 109.41663 * 306.67681 * 29 13 3 55 55 H 1.09002 * 109.41853 * 66.46972 * 29 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6508 1.9654 -0.8736 5 6 3.5463 1.4429 -0.0441 6 1 4.1111 1.8216 0.7949 7 6 4.2035 0.9595 -1.1556 8 7 3.5159 0.4976 -2.1771 9 14 6.0708 0.9527 -1.2071 10 1 6.5545 2.2296 -1.7907 11 1 6.6035 0.8051 0.1712 12 1 6.5389 -0.1821 -2.0428 13 7 1.5857 2.1225 1.2203 14 6 1.7156 3.5752 1.0909 15 6 3.0853 4.0192 1.6143 16 6 2.9790 4.2825 3.0943 17 7 3.4370 5.3039 3.7568 18 7 3.1721 5.1588 5.0089 19 6 2.5253 4.0382 5.1961 20 6 2.0425 3.4931 6.5155 21 7 3.0886 2.6497 7.1090 22 6 3.3231 1.4506 6.2943 23 6 4.5132 0.6725 6.8602 24 6 4.2160 0.2776 8.3095 25 6 3.9279 1.5408 9.1255 26 6 2.7547 2.2937 8.4941 27 7 2.3714 3.4609 3.9856 28 6 1.6783 2.2117 3.6704 29 6 2.2848 1.6052 2.4016 30 1 -0.3634 0.5816 -0.8471 31 1 -0.3633 -1.0246 -0.0801 32 1 -0.3633 0.4428 0.9274 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 3.9783 0.1579 -2.9593 36 1 1.6198 3.8560 0.0421 37 1 0.9309 4.0626 1.6694 38 1 3.8174 3.2318 1.4351 39 1 3.3939 4.9307 1.1025 40 1 1.8163 4.3195 7.1892 41 1 1.1433 2.8981 6.3556 42 1 2.4346 0.8194 6.3130 43 1 3.5374 1.7456 5.2672 44 1 5.4051 1.2983 6.8292 45 1 4.6772 -0.2256 6.2647 46 1 5.0785 -0.2391 8.7305 47 1 3.3476 -0.3805 8.3380 48 1 4.8106 2.1803 9.1302 49 1 3.6737 1.2631 10.1485 50 1 2.5562 3.2010 9.0645 51 1 1.8689 1.6586 8.5023 52 1 1.7928 1.5127 4.4989 53 1 0.6195 2.4138 3.5082 54 1 2.1853 0.5202 2.4354 55 1 3.3406 1.8695 2.3426 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255172957.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:45 Heat of formation + Delta-G solvation = 78.063053 kcal Electronic energy + Delta-G solvation = -33317.409840 eV Core-core repulsion = 29390.073974 eV Total energy + Delta-G solvation = -3927.335866 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.238 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -44.34368 -40.04276 -39.95490 -36.44294 -35.49727 -34.44161 -33.70588 -32.39401 -31.76670 -31.20300 -29.35671 -28.20310 -27.47016 -25.87465 -24.71902 -24.35490 -23.95287 -22.33115 -21.92137 -21.52877 -20.65763 -20.62456 -18.47015 -18.10862 -17.72358 -17.05761 -16.87405 -16.35790 -16.10471 -15.78641 -15.64092 -15.58600 -15.23457 -15.04419 -14.65593 -14.52380 -14.23563 -14.05247 -13.98728 -13.90005 -13.64905 -13.30431 -13.15471 -13.01818 -12.96310 -12.80805 -12.60066 -12.57097 -12.43826 -12.39497 -12.30603 -12.15091 -11.87322 -11.63994 -11.49312 -11.40687 -11.34156 -11.31792 -11.18786 -10.99337 -10.86434 -10.42773 -10.04423 -9.34499 -9.00936 -8.06117 -6.23512 0.79219 1.35184 1.41217 1.45187 1.52387 1.79016 2.39318 2.90591 3.12798 3.18103 3.25417 3.38363 3.58143 3.78232 3.85709 3.95602 4.00793 4.03236 4.10020 4.14541 4.25948 4.33916 4.38809 4.43983 4.50846 4.54043 4.60085 4.65095 4.71689 4.77488 4.79134 4.85710 4.88060 4.89731 4.95312 4.96806 5.00322 5.03452 5.06270 5.10433 5.21045 5.25579 5.29284 5.30173 5.46529 5.47875 5.54846 5.67543 5.81186 5.90173 5.98322 6.01202 6.09495 6.15430 6.32343 6.58228 6.96003 7.47695 7.74105 8.92245 Molecular weight = 347.24amu Principal moments of inertia in cm(-1) A = 0.011279 B = 0.003513 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2481.898479 B = 7968.408092 C = 8334.160421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.099 4.099 3 C 0.223 3.777 4 H 0.014 0.986 5 C -0.549 4.549 6 H 0.062 0.938 7 C 0.034 3.966 8 N -0.907 5.907 9 Si 0.927 3.073 10 H -0.282 1.282 11 H -0.275 1.275 12 H -0.286 1.286 13 N -0.526 5.526 14 C 0.077 3.923 15 C -0.072 4.072 16 C 0.190 3.810 17 N -0.338 5.338 18 N -0.325 5.325 19 C 0.186 3.814 20 C 0.150 3.850 21 N -0.549 5.549 22 C 0.050 3.950 23 C -0.118 4.118 24 C -0.117 4.117 25 C -0.115 4.115 26 C 0.058 3.942 27 N -0.459 5.459 28 C 0.103 3.897 29 C 0.051 3.949 30 H 0.031 0.969 31 H 0.042 0.958 32 H 0.063 0.937 33 H 0.049 0.951 34 H 0.038 0.962 35 H 0.260 0.740 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.099 0.901 39 H 0.093 0.907 40 H 0.119 0.881 41 H 0.078 0.922 42 H 0.054 0.946 43 H 0.049 0.951 44 H 0.048 0.952 45 H 0.070 0.930 46 H 0.069 0.931 47 H 0.071 0.929 48 H 0.056 0.944 49 H 0.088 0.912 50 H 0.087 0.913 51 H 0.051 0.949 52 H 0.118 0.882 53 H 0.110 0.890 54 H 0.098 0.902 55 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.523 -2.345 19.763 20.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.138 4.138 3 C 0.116 3.884 4 H 0.032 0.968 5 C -0.588 4.588 6 H 0.080 0.920 7 C -0.167 4.167 8 N -0.546 5.546 9 Si 0.755 3.245 10 H -0.208 1.208 11 H -0.200 1.200 12 H -0.212 1.212 13 N -0.249 5.249 14 C -0.053 4.053 15 C -0.113 4.113 16 C -0.078 4.078 17 N -0.178 5.178 18 N -0.165 5.165 19 C -0.083 4.083 20 C 0.020 3.980 21 N -0.275 5.275 22 C -0.078 4.078 23 C -0.155 4.155 24 C -0.154 4.154 25 C -0.153 4.153 26 C -0.068 4.068 27 N -0.150 5.150 28 C -0.018 4.018 29 C -0.077 4.077 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.082 0.918 33 H 0.067 0.933 34 H 0.057 0.943 35 H 0.070 0.930 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.117 0.883 39 H 0.111 0.889 40 H 0.137 0.863 41 H 0.096 0.904 42 H 0.072 0.928 43 H 0.067 0.933 44 H 0.067 0.933 45 H 0.089 0.911 46 H 0.088 0.912 47 H 0.089 0.911 48 H 0.075 0.925 49 H 0.107 0.893 50 H 0.106 0.894 51 H 0.069 0.931 52 H 0.136 0.864 53 H 0.128 0.872 54 H 0.116 0.884 55 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -5.915 -0.973 19.963 20.844 hybrid contribution 1.150 -1.220 -1.394 2.180 sum -4.765 -2.193 18.569 19.296 Atomic orbital electron populations 1.21566 0.96092 0.99592 1.01069 1.21378 0.94552 0.97940 0.99938 1.19155 0.91375 0.91510 0.86315 0.96772 1.22084 0.93798 1.41165 1.01755 0.92018 1.25411 1.00492 0.95106 0.95708 1.69997 1.36139 1.42095 1.06326 0.86043 0.83220 0.77443 0.77810 1.20844 1.20028 1.21201 1.62140 1.55739 1.03155 1.03863 1.21973 0.93069 0.89166 1.01071 1.21045 1.02132 1.04101 0.84032 1.24869 0.97565 0.89249 0.96139 1.74059 1.22665 1.21882 0.99208 1.74213 1.16326 1.16830 1.09138 1.24913 1.01467 0.92713 0.89218 1.20422 0.92312 0.98151 0.87093 1.61751 1.43747 1.18546 1.03475 1.22269 0.98613 0.90563 0.96322 1.21565 0.97272 0.99153 0.97558 1.21563 1.02178 0.97679 0.93999 1.21589 0.98167 0.96166 0.99343 1.22180 0.97487 1.00435 0.86739 1.46312 1.41494 1.20585 1.06594 1.22447 0.97777 0.82138 0.99449 1.22229 0.96342 1.00661 0.88486 0.95013 0.93917 0.91825 0.93278 0.94318 0.93046 0.90993 0.91224 0.88283 0.88889 0.86309 0.90422 0.92783 0.93286 0.93282 0.91105 0.91236 0.91059 0.92540 0.89323 0.89413 0.93068 0.86412 0.87231 0.88387 0.94632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.23 9.71 71.98 0.70 -3.54 16 2 C -0.10 -4.05 5.22 30.60 0.16 -3.89 16 3 C 0.22 9.51 1.57 44.17 0.07 9.58 16 4 H 0.01 0.71 7.60 -2.39 -0.02 0.69 16 5 C -0.55 -26.05 7.02 25.60 0.18 -25.87 16 6 H 0.06 2.93 4.00 -2.91 -0.01 2.91 16 7 C 0.03 1.71 5.32 84.66 0.45 2.16 16 8 N -0.91 -48.35 11.73 21.45 0.25 -48.10 16 9 Si 0.93 41.52 29.54 68.60 2.03 43.54 16 10 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 11 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 12 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 13 N -0.53 -18.00 3.95 -876.49 -3.46 -21.46 16 14 C 0.08 2.57 5.46 86.46 0.47 3.05 16 15 C -0.07 -2.57 5.39 29.91 0.16 -2.41 16 16 C 0.19 6.78 6.96 138.07 0.96 7.74 16 17 N -0.34 -13.56 12.21 -50.32 -0.61 -14.18 16 18 N -0.32 -12.11 12.23 -50.35 -0.62 -12.72 16 19 C 0.19 5.43 6.66 138.08 0.92 6.35 16 20 C 0.15 2.95 5.25 85.56 0.45 3.40 16 21 N -0.55 -10.83 4.65 -900.92 -4.19 -15.02 16 22 C 0.05 1.00 4.00 86.33 0.35 1.34 16 23 C -0.12 -2.23 6.09 30.65 0.19 -2.04 16 24 C -0.12 -1.62 6.00 30.67 0.18 -1.43 16 25 C -0.11 -1.51 6.09 30.64 0.19 -1.32 16 26 C 0.06 0.79 5.46 86.32 0.47 1.26 16 27 N -0.46 -13.49 2.61 -504.76 -1.32 -14.81 16 28 C 0.10 2.47 5.43 86.47 0.47 2.94 16 29 C 0.05 1.58 4.40 86.39 0.38 1.96 16 30 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 32 H 0.06 1.93 7.79 -2.39 -0.02 1.91 16 33 H 0.05 2.35 6.48 -2.38 -0.02 2.34 16 34 H 0.04 1.50 6.52 -2.38 -0.02 1.48 16 35 H 0.26 13.49 8.31 -92.70 -0.77 12.72 16 36 H 0.07 2.56 7.43 -2.39 -0.02 2.54 16 37 H 0.07 2.15 7.81 -2.39 -0.02 2.13 16 38 H 0.10 3.98 3.73 -2.38 -0.01 3.97 16 39 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 40 H 0.12 2.08 7.99 -2.39 -0.02 2.07 16 41 H 0.08 1.14 7.94 -2.39 -0.02 1.12 16 42 H 0.05 0.87 7.57 -2.38 -0.02 0.85 16 43 H 0.05 1.24 5.33 -2.39 -0.01 1.23 16 44 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.07 1.28 8.14 -2.39 -0.02 1.27 16 46 H 0.07 0.89 8.14 -2.39 -0.02 0.88 16 47 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 48 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 49 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 50 H 0.09 1.04 8.02 -2.39 -0.02 1.02 16 51 H 0.05 0.55 8.14 -2.38 -0.02 0.53 16 52 H 0.12 2.21 5.19 -2.39 -0.01 2.20 16 53 H 0.11 2.38 8.06 -2.38 -0.02 2.36 16 54 H 0.10 2.95 6.37 -2.38 -0.02 2.94 16 55 H 0.04 1.31 4.28 -2.39 -0.01 1.30 16 Total: -1.00 -61.15 396.09 -0.29 -61.44 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: 0.89 Total: 22.04 kcal Atomic # 6 Polarization: -7.48 SS G_CDS: 6.74 Total: -0.73 kcal Atomic # 7 Polarization: -116.34 SS G_CDS: -9.95 Total: -126.29 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.54 kcal Total: -61.15 -0.29 -61.44 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255172957.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.504 kcal (2) G-P(sol) polarization free energy of solvation -61.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds