Wall clock time and date at job start Wed Apr 1 2020 05:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50701 * 119.99469 * 2 1 4 4 N 1.46502 * 109.47069 * 125.00136 * 3 2 1 5 5 C 1.36751 * 127.13718 * 272.82880 * 4 3 2 6 6 C 1.50702 * 126.34422 * 0.05064 * 5 4 3 7 7 C 1.53004 * 109.47077 * 90.00281 * 6 5 4 8 8 C 1.50698 * 109.46844 * 179.97438 * 7 6 5 9 9 H 1.08000 * 120.00190 * 0.02562 * 8 7 6 10 10 C 1.37878 * 119.99703 * 179.97438 * 8 7 6 11 11 N 1.31514 * 119.99866 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 119.99964 * 180.02562 * 10 8 7 13 13 H 1.48508 * 109.47084 * 0.02562 * 12 10 8 14 14 H 1.48504 * 109.47415 * 119.99862 * 12 10 8 15 15 H 1.48496 * 109.47156 * 240.00147 * 12 10 8 16 16 N 1.30291 * 107.30459 * 180.02562 * 5 4 3 17 17 N 1.28529 * 110.05769 * 359.72872 * 16 5 4 18 18 C 1.31220 * 109.85627 * 0.44895 * 17 16 5 19 19 N 1.38577 * 126.47175 * 179.82237 * 18 17 16 20 20 C 1.46945 * 111.00207 * 293.26956 * 19 18 17 21 21 C 1.53057 * 109.36740 * 183.18655 * 20 19 18 22 22 H 1.08997 * 109.48529 * 61.56347 * 21 20 19 23 23 C 1.53000 * 109.49200 * 181.60702 * 21 20 19 24 24 N 1.46955 * 109.36192 * 301.59855 * 21 20 19 25 25 C 1.46903 * 110.99893 * 183.18542 * 24 21 20 26 26 C 1.52997 * 109.47099 * 189.99847 * 25 24 21 27 27 C 1.46958 * 110.88234 * 59.31952 * 24 21 20 28 28 C 1.46959 * 111.00011 * 57.06771 * 19 18 17 29 29 H 1.09005 * 109.49007 * 296.78256 * 28 19 18 30 30 C 1.53000 * 109.50667 * 56.83095 * 28 19 18 31 31 H 1.07992 * 120.00265 * 0.02562 * 1 2 3 32 32 H 1.08005 * 119.99392 * 179.97438 * 1 2 3 33 33 H 1.07997 * 120.00391 * 180.02562 * 2 1 3 34 34 H 1.08993 * 109.47312 * 5.00129 * 3 2 1 35 35 H 1.09002 * 109.47305 * 244.99286 * 3 2 1 36 36 H 1.09000 * 109.46803 * 210.00337 * 6 5 4 37 37 H 1.09001 * 109.47063 * 330.00005 * 6 5 4 38 38 H 1.09001 * 109.46780 * 300.00225 * 7 6 5 39 39 H 1.08994 * 109.46625 * 59.99606 * 7 6 5 40 40 H 0.97002 * 119.99480 * 179.97438 * 11 10 8 41 41 H 1.08998 * 109.49614 * 63.22116 * 20 19 18 42 42 H 1.09002 * 109.49180 * 303.15224 * 20 19 18 43 43 H 1.08998 * 109.46618 * 60.00011 * 23 21 20 44 44 H 1.08994 * 109.47084 * 179.97438 * 23 21 20 45 45 H 1.09002 * 109.46778 * 300.00375 * 23 21 20 46 46 H 1.09005 * 109.47216 * 310.00290 * 25 24 21 47 47 H 1.09002 * 109.46748 * 69.99865 * 25 24 21 48 48 H 1.08994 * 109.47314 * 299.99779 * 26 25 24 49 49 H 1.09000 * 109.46841 * 60.00582 * 26 25 24 50 50 H 1.09006 * 109.46916 * 179.97438 * 26 25 24 51 51 H 1.08998 * 109.48654 * 60.64354 * 27 24 21 52 52 H 1.08996 * 109.48631 * 180.70868 * 27 24 21 53 53 H 1.09000 * 109.47489 * 179.90303 * 30 28 19 54 54 H 1.09004 * 109.47560 * 299.90761 * 30 28 19 55 55 H 1.09003 * 109.47188 * 59.90062 * 30 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.7291 1.7440 2.4083 6 6 1.4111 2.2610 2.9248 7 6 0.5764 1.0924 3.4526 8 6 -0.7413 1.6096 3.9697 9 1 -0.9615 2.6660 3.9259 10 6 -1.6661 0.7339 4.4977 11 7 -1.3986 -0.5527 4.5497 12 14 -3.2997 1.3748 5.1381 13 1 -3.3553 2.8487 4.9651 14 1 -4.4102 0.7456 4.3790 15 1 -3.4325 1.0396 6.5786 16 7 3.8274 1.6061 3.0955 17 7 4.7592 1.1333 2.3471 18 6 4.3042 0.9517 1.1298 19 7 5.0180 0.4609 0.0482 20 6 6.0751 1.3988 -0.3546 21 6 6.7864 0.8586 -1.5975 22 1 6.0732 0.7760 -2.4175 23 6 7.9139 1.8131 -1.9958 24 7 7.3475 -0.4668 -1.3004 25 6 8.1042 -0.9872 -2.4469 26 6 8.4589 -2.4548 -2.2001 27 6 6.2904 -1.4048 -0.8976 28 6 5.5791 -0.8645 0.3452 29 1 6.2924 -0.7820 1.1654 30 6 4.4517 -1.8190 0.7435 31 1 -0.5400 0.9352 -0.0004 32 1 -0.5399 -0.9354 -0.0004 33 1 1.8501 -0.9352 -0.0004 34 1 1.3585 2.1316 0.0896 35 1 2.6213 1.4027 -0.9313 36 1 1.5908 2.9725 3.7308 37 1 0.8731 2.7561 2.1164 38 1 0.3969 0.3810 2.6465 39 1 1.1145 0.5974 4.2609 40 1 -2.0491 -1.1687 4.9215 41 1 6.7941 1.5071 0.4575 42 1 5.6333 2.3691 -0.5814 43 1 8.6273 1.8948 -1.1758 44 1 8.4205 1.4279 -2.8806 45 1 7.4972 2.7964 -2.2143 46 1 7.4979 -0.9066 -3.3492 47 1 9.0193 -0.4081 -2.5712 48 1 9.0652 -2.5353 -1.2979 49 1 7.5438 -3.0338 -2.0758 50 1 9.0200 -2.8411 -3.0510 51 1 5.5715 -1.5130 -1.7097 52 1 6.7322 -2.3750 -0.6709 53 1 4.8682 -2.8023 0.9621 54 1 3.9453 -1.4340 1.6287 55 1 3.7381 -1.9008 -0.0764 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262952615.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:14 Heat of formation + Delta-G solvation = 90.989385 kcal Electronic energy + Delta-G solvation = -32526.179763 eV Core-core repulsion = 28599.404425 eV Total energy + Delta-G solvation = -3926.775339 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.238 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -44.05288 -40.90563 -37.49408 -37.24724 -35.83677 -34.59061 -33.85409 -33.58526 -32.18291 -30.10299 -29.95536 -27.95830 -27.23435 -26.77602 -26.16567 -23.80708 -23.42436 -22.79845 -21.84530 -21.44733 -20.80342 -20.47007 -18.66326 -18.15913 -17.54716 -17.45013 -16.72056 -16.54824 -16.32909 -16.10872 -15.77081 -15.56981 -15.44508 -15.09821 -14.86470 -14.60251 -14.47954 -14.22915 -13.86309 -13.63020 -13.48767 -13.19394 -13.05259 -12.95353 -12.87934 -12.84279 -12.78637 -12.64147 -12.51216 -12.44609 -12.42908 -12.19491 -12.05070 -11.92815 -11.79545 -11.72080 -11.56375 -11.50213 -11.25604 -11.05682 -10.58739 -10.38223 -10.00980 -9.86881 -9.27504 -8.16673 -6.27683 0.66578 0.99988 1.42524 1.44704 1.56387 1.59344 1.77518 2.43440 2.61954 2.80378 3.17913 3.45318 3.59074 3.72876 3.75817 3.85166 3.92484 3.98483 4.06686 4.15155 4.15753 4.20570 4.28430 4.35507 4.39494 4.48963 4.52424 4.57464 4.61412 4.65338 4.67830 4.68549 4.73481 4.83466 4.86677 4.88664 4.94012 4.98851 4.99596 5.05973 5.07942 5.13468 5.17185 5.31692 5.38539 5.50019 5.53889 5.59086 5.61765 5.65610 5.71325 5.83360 6.07563 6.11684 6.20278 6.25267 6.87735 7.41432 7.71582 8.95168 Molecular weight = 347.24amu Principal moments of inertia in cm(-1) A = 0.020366 B = 0.002580 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.518703 B =10849.712807 C =11166.982648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.193 4.193 3 C 0.145 3.855 4 N -0.456 5.456 5 C 0.205 3.795 6 C -0.017 4.017 7 C 0.044 3.956 8 C -0.533 4.533 9 H 0.069 0.931 10 C 0.005 3.995 11 N -0.931 5.931 12 Si 0.962 3.038 13 H -0.258 1.258 14 H -0.278 1.278 15 H -0.286 1.286 16 N -0.336 5.336 17 N -0.348 5.348 18 C 0.349 3.651 19 N -0.450 5.450 20 C 0.074 3.926 21 C 0.093 3.907 22 H 0.056 0.944 23 C -0.140 4.140 24 N -0.548 5.548 25 C 0.053 3.947 26 C -0.156 4.156 27 C 0.071 3.929 28 C 0.099 3.901 29 H 0.043 0.957 30 C -0.139 4.139 31 H 0.110 0.890 32 H 0.101 0.899 33 H 0.104 0.896 34 H 0.109 0.891 35 H 0.125 0.875 36 H 0.084 0.916 37 H 0.095 0.905 38 H 0.011 0.989 39 H -0.026 1.026 40 H 0.261 0.739 41 H 0.039 0.961 42 H 0.083 0.917 43 H 0.057 0.943 44 H 0.076 0.924 45 H 0.071 0.929 46 H 0.040 0.960 47 H 0.085 0.915 48 H 0.056 0.944 49 H 0.058 0.942 50 H 0.073 0.927 51 H 0.050 0.950 52 H 0.104 0.896 53 H 0.085 0.915 54 H 0.016 0.984 55 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.734 0.064 -21.873 26.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.212 4.212 3 C 0.024 3.976 4 N -0.147 5.147 5 C -0.063 4.063 6 C -0.057 4.057 7 C 0.006 3.994 8 C -0.571 4.571 9 H 0.087 0.913 10 C -0.193 4.193 11 N -0.571 5.571 12 Si 0.787 3.213 13 H -0.181 1.181 14 H -0.203 1.203 15 H -0.212 1.212 16 N -0.176 5.176 17 N -0.191 5.191 18 C -0.008 4.008 19 N -0.177 5.177 20 C -0.053 4.053 21 C -0.016 4.016 22 H 0.074 0.926 23 C -0.198 4.198 24 N -0.274 5.274 25 C -0.074 4.074 26 C -0.213 4.213 27 C -0.057 4.057 28 C -0.009 4.009 29 H 0.061 0.939 30 C -0.197 4.197 31 H 0.128 0.872 32 H 0.119 0.881 33 H 0.122 0.878 34 H 0.127 0.873 35 H 0.143 0.857 36 H 0.103 0.897 37 H 0.113 0.887 38 H 0.029 0.971 39 H -0.008 1.008 40 H 0.070 0.930 41 H 0.058 0.942 42 H 0.101 0.899 43 H 0.076 0.924 44 H 0.094 0.906 45 H 0.090 0.910 46 H 0.058 0.942 47 H 0.104 0.896 48 H 0.076 0.924 49 H 0.077 0.923 50 H 0.092 0.908 51 H 0.068 0.932 52 H 0.122 0.878 53 H 0.104 0.896 54 H 0.036 0.964 55 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 16.652 -0.048 -20.700 26.567 hybrid contribution -1.863 -0.223 0.064 1.877 sum 14.789 -0.271 -20.636 25.390 Atomic orbital electron populations 1.24020 0.95569 1.03066 0.95045 1.22870 0.96154 0.97637 1.04557 1.21124 0.91496 0.97702 0.87307 1.46507 1.09813 1.47670 1.10752 1.25361 0.98818 1.00725 0.81440 1.20174 0.85598 0.99142 1.00769 1.18844 0.93211 0.92689 0.94653 1.21565 1.00912 0.94393 1.40194 0.91269 1.25889 1.02414 0.94934 0.96071 1.70130 1.36806 1.03432 1.46707 0.85448 0.79085 0.79167 0.77635 1.18137 1.20349 1.21234 1.73949 0.98129 1.19011 1.26470 1.74417 1.24577 1.19133 1.00997 1.22350 0.84393 1.01899 0.92160 1.59129 1.26199 1.04042 1.28337 1.22319 0.90824 0.94539 0.97619 1.21639 0.95763 0.89697 0.94466 0.92594 1.21808 0.97375 0.98506 1.02070 1.62246 1.25143 1.02334 1.37698 1.22160 0.98173 0.96556 0.90525 1.21934 1.01937 0.94852 1.02598 1.22215 0.92236 0.96565 0.94661 1.21745 0.95054 0.85907 0.98169 0.93922 1.21792 0.98096 0.99489 1.00311 0.87178 0.88058 0.87782 0.87303 0.85691 0.89712 0.88665 0.97053 1.00753 0.92987 0.94237 0.89904 0.92409 0.90550 0.91032 0.94215 0.89623 0.92447 0.92335 0.90771 0.93229 0.87827 0.89575 0.96442 0.91002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.94 13.50 67.78 0.92 -3.03 16 2 C -0.19 -5.42 9.61 25.64 0.25 -5.18 16 3 C 0.14 3.74 6.43 85.63 0.55 4.29 16 4 N -0.46 -15.43 2.79 -518.90 -1.45 -16.87 16 5 C 0.21 8.41 7.32 137.64 1.01 9.42 16 6 C -0.02 -0.71 5.53 29.85 0.16 -0.54 16 7 C 0.04 2.29 4.95 29.85 0.15 2.44 16 8 C -0.53 -28.83 9.11 25.60 0.23 -28.60 16 9 H 0.07 3.52 7.74 -2.91 -0.02 3.49 16 10 C 0.01 0.28 5.46 84.65 0.46 0.74 16 11 N -0.93 -55.67 13.29 21.45 0.28 -55.39 16 12 Si 0.96 43.01 29.54 68.60 2.03 45.04 16 13 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 14 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 15 H -0.29 -12.84 7.11 99.48 0.71 -12.14 16 16 N -0.34 -15.39 12.18 -49.53 -0.60 -15.99 16 17 N -0.35 -14.59 12.13 -58.01 -0.70 -15.29 16 18 C 0.35 11.91 4.93 260.11 1.28 13.19 16 19 N -0.45 -11.86 4.56 -681.63 -3.11 -14.97 16 20 C 0.07 1.69 4.83 86.31 0.42 2.11 16 21 C 0.09 1.54 2.52 44.92 0.11 1.66 16 22 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 23 C -0.14 -1.75 8.87 71.98 0.64 -1.11 16 24 N -0.55 -9.24 4.68 -870.48 -4.07 -13.31 16 25 C 0.05 0.63 5.18 86.30 0.45 1.08 16 26 C -0.16 -1.64 9.17 71.98 0.66 -0.98 16 27 C 0.07 1.28 4.21 86.31 0.36 1.65 16 28 C 0.10 2.49 2.46 44.92 0.11 2.60 16 29 H 0.04 1.30 8.12 -2.38 -0.02 1.28 16 30 C -0.14 -3.66 8.97 71.98 0.65 -3.02 16 31 H 0.11 2.92 7.84 -2.91 -0.02 2.90 16 32 H 0.10 2.88 8.06 -2.91 -0.02 2.85 16 33 H 0.10 3.04 6.98 -2.91 -0.02 3.02 16 34 H 0.11 2.53 6.99 -2.39 -0.02 2.51 16 35 H 0.13 2.57 8.14 -2.39 -0.02 2.55 16 36 H 0.08 3.52 8.14 -2.39 -0.02 3.50 16 37 H 0.10 3.36 7.33 -2.39 -0.02 3.34 16 38 H 0.01 0.60 7.05 -2.39 -0.02 0.58 16 39 H -0.03 -1.58 8.14 -2.39 -0.02 -1.60 16 40 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 41 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.08 1.80 8.13 -2.39 -0.02 1.78 16 43 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.08 0.73 6.59 -2.39 -0.02 0.72 16 45 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 46 H 0.04 0.44 8.08 -2.38 -0.02 0.42 16 47 H 0.09 0.91 6.86 -2.39 -0.02 0.90 16 48 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 49 H 0.06 0.62 6.26 -2.39 -0.01 0.61 16 50 H 0.07 0.58 8.14 -2.38 -0.02 0.56 16 51 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 52 H 0.10 1.62 5.99 -2.39 -0.01 1.60 16 53 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 54 H 0.02 0.59 7.15 -2.39 -0.02 0.58 16 55 H 0.07 1.73 7.11 -2.39 -0.02 1.71 16 Total: -1.00 -71.08 427.69 1.63 -69.45 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: 0.84 Total: 20.62 kcal Atomic # 6 Polarization: -11.70 SS G_CDS: 8.41 Total: -3.30 kcal Atomic # 7 Polarization: -122.17 SS G_CDS: -9.65 Total: -131.82 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -71.08 1.63 -69.45 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262952615.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.444 kcal (2) G-P(sol) polarization free energy of solvation -71.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds