Wall clock time and date at job start Wed Apr 1 2020 04:41:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50701 * 119.99801 * 2 1 4 4 N 1.46498 * 109.46963 * 127.65773 * 3 2 1 5 5 C 1.36451 * 127.13884 * 88.54961 * 4 3 2 6 6 N 1.38582 * 126.47116 * 0.02562 * 5 4 3 7 7 C 1.46957 * 110.99653 * 127.60583 * 6 5 4 8 8 C 1.53056 * 109.37737 * 183.17788 * 7 6 5 9 9 N 1.46958 * 109.36376 * 301.63127 * 8 7 6 10 10 C 1.46899 * 110.99635 * 183.16904 * 9 8 7 11 11 C 1.53008 * 109.47112 * 51.17967 * 10 9 8 12 12 C 1.53001 * 109.46996 * 171.17447 * 10 9 8 13 13 C 1.46951 * 110.89878 * 59.28927 * 9 8 7 14 14 C 1.46957 * 110.99875 * 251.40331 * 6 5 4 15 15 N 1.31213 * 107.05667 * 180.28383 * 5 4 3 16 16 N 1.28527 * 109.85930 * 359.55655 * 15 5 4 17 17 C 1.30299 * 110.05317 * 0.45524 * 16 15 5 18 18 C 1.50698 * 126.34568 * 179.68905 * 17 16 15 19 19 C 1.53006 * 109.46934 * 111.24796 * 18 17 16 20 20 C 1.52995 * 109.47307 * 231.24683 * 18 17 16 21 21 C 1.50700 * 109.47664 * 351.25280 * 18 17 16 22 22 H 1.08005 * 119.99852 * 359.97438 * 21 18 17 23 23 C 1.37872 * 120.00403 * 179.97438 * 21 18 17 24 24 N 1.31516 * 119.99607 * 359.97438 * 23 21 18 25 25 Si 1.86799 * 120.00249 * 179.97438 * 23 21 18 26 26 H 1.48494 * 109.47264 * 59.99478 * 25 23 21 27 27 H 1.48495 * 109.47166 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.46801 * 299.99720 * 25 23 21 29 29 H 1.07992 * 119.99839 * 179.97438 * 1 2 3 30 30 H 1.08003 * 120.00023 * 0.02562 * 1 2 3 31 31 H 1.07995 * 119.99998 * 180.02562 * 2 1 3 32 32 H 1.08999 * 109.47339 * 7.65691 * 3 2 1 33 33 H 1.08995 * 109.47050 * 247.65548 * 3 2 1 34 34 H 1.09004 * 109.48714 * 303.15374 * 7 6 5 35 35 H 1.08997 * 109.49457 * 63.20051 * 7 6 5 36 36 H 1.08996 * 109.48610 * 61.57838 * 8 7 6 37 37 H 1.09003 * 109.48637 * 181.63862 * 8 7 6 38 38 H 1.08998 * 109.47033 * 291.17890 * 10 9 8 39 39 H 1.08998 * 109.47234 * 60.00047 * 11 10 9 40 40 H 1.09001 * 109.47172 * 180.02562 * 11 10 9 41 41 H 1.09000 * 109.46785 * 299.99326 * 11 10 9 42 42 H 1.08998 * 109.47591 * 300.00101 * 12 10 9 43 43 H 1.09001 * 109.46824 * 60.00030 * 12 10 9 44 44 H 1.09000 * 109.47211 * 180.02562 * 12 10 9 45 45 H 1.09004 * 109.48541 * 180.72396 * 13 9 8 46 46 H 1.08997 * 109.48796 * 60.65903 * 13 9 8 47 47 H 1.09004 * 109.48981 * 296.77597 * 14 6 5 48 48 H 1.08996 * 109.49009 * 56.82359 * 14 6 5 49 49 H 1.09002 * 109.46823 * 55.30108 * 19 18 17 50 50 H 1.09002 * 109.47408 * 175.30116 * 19 18 17 51 51 H 1.09000 * 109.47239 * 295.30602 * 19 18 17 52 52 H 1.09000 * 109.47324 * 44.17599 * 20 18 17 53 53 H 1.08999 * 109.47274 * 164.17903 * 20 18 17 54 54 H 1.09003 * 109.47307 * 284.18087 * 20 18 17 55 55 H 0.97003 * 119.99457 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0384 1.3061 1.0935 5 6 4.3241 0.8510 1.0513 6 7 4.9653 0.2942 -0.0438 7 6 6.2431 0.9711 -0.3061 8 6 6.8807 0.3816 -1.5665 9 7 7.0807 -1.0625 -1.3816 10 6 7.7605 -1.6527 -2.5424 11 6 9.0209 -0.8456 -2.8601 12 6 8.1472 -3.0988 -2.2262 13 6 5.8030 -1.7394 -1.1192 14 6 5.1659 -1.1498 0.1413 15 7 4.8368 1.0349 2.2450 16 7 3.9639 1.5784 3.0161 17 6 2.8486 1.7630 2.3682 18 6 1.5838 2.3671 2.9215 19 6 1.3426 3.7306 2.2705 20 6 0.4027 1.4423 2.6206 21 6 1.7197 2.5395 4.4125 22 1 2.6308 2.2410 4.9098 23 6 0.6810 3.0783 5.1417 24 7 -0.4282 3.4422 4.5361 25 14 0.8493 3.2913 6.9899 26 1 1.9961 4.1880 7.2825 27 1 -0.3971 3.8867 7.5350 28 1 1.0823 1.9676 7.6215 29 1 -0.5399 -0.9353 -0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3631 2.1290 0.1369 33 1 2.5835 1.4244 -0.9505 34 1 6.0668 2.0368 -0.4522 35 1 6.9123 0.8260 0.5419 36 1 6.2239 0.5511 -2.4196 37 1 7.8424 0.8622 -1.7464 38 1 7.0914 -1.6353 -3.4028 39 1 9.6900 -0.8630 -1.9997 40 1 9.5251 -1.2832 -3.7217 41 1 8.7454 0.1846 -3.0854 42 1 8.8162 -3.1163 -1.3658 43 1 7.2492 -3.6738 -1.9998 44 1 8.6519 -3.5366 -3.0874 45 1 5.9793 -2.8051 -0.9732 46 1 5.1337 -1.5940 -1.9671 47 1 5.8231 -1.3193 0.9943 48 1 4.2043 -1.6303 0.3220 49 1 1.3275 3.6180 1.1864 50 1 0.3862 4.1302 2.6077 51 1 2.1425 4.4149 2.5535 52 1 0.6859 0.4110 2.8313 53 1 -0.4456 1.7211 3.2457 54 1 0.1264 1.5358 1.5704 55 1 -1.1588 3.8216 5.0491 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262968939.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:13 Heat of formation + Delta-G solvation = 110.999097 kcal Electronic energy + Delta-G solvation = -32742.041024 eV Core-core repulsion = 28816.133371 eV Total energy + Delta-G solvation = -3925.907652 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.238 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.90294 -40.58921 -38.06221 -37.50551 -36.55276 -33.71565 -33.45944 -32.69683 -32.27054 -29.84722 -28.16967 -27.97046 -27.53249 -27.25437 -26.64092 -24.32294 -23.63841 -22.74992 -21.54135 -21.04093 -20.84408 -20.53237 -18.64251 -17.81938 -17.43407 -17.18804 -16.82295 -16.49000 -15.95538 -15.94060 -15.62050 -15.56807 -15.47965 -15.17051 -14.80701 -14.58208 -14.25616 -13.85188 -13.61310 -13.55604 -13.33423 -13.14821 -13.03506 -12.96958 -12.74283 -12.70258 -12.64091 -12.53866 -12.46568 -12.33276 -12.23389 -12.04504 -11.97375 -11.83555 -11.81981 -11.77894 -11.49527 -11.41876 -10.96820 -10.68539 -10.50133 -10.24995 -9.98180 -9.70760 -9.27545 -8.04306 -6.14995 0.83778 1.06253 1.44534 1.44959 1.53173 1.65212 1.99046 2.47915 2.73648 2.82319 3.21401 3.65092 3.72285 3.82007 3.86759 3.89839 4.05942 4.10024 4.15450 4.20800 4.29346 4.29581 4.39424 4.46476 4.46632 4.52901 4.57791 4.70055 4.72912 4.77602 4.81553 4.82829 4.89284 4.90846 4.94653 4.97882 5.00303 5.03252 5.09253 5.12557 5.21381 5.30087 5.35032 5.44475 5.49637 5.57992 5.60334 5.61180 5.71036 5.80092 5.99080 6.07508 6.09581 6.16733 6.34149 6.43135 6.87399 7.50133 7.95470 8.96480 Molecular weight = 347.24amu Principal moments of inertia in cm(-1) A = 0.018623 B = 0.002788 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.145195 B =10039.894655 C =10746.010584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.189 4.189 3 C 0.137 3.863 4 N -0.460 5.460 5 C 0.326 3.674 6 N -0.447 5.447 7 C 0.071 3.929 8 C 0.068 3.932 9 N -0.548 5.548 10 C 0.077 3.923 11 C -0.148 4.148 12 C -0.142 4.142 13 C 0.070 3.930 14 C 0.071 3.929 15 N -0.355 5.355 16 N -0.336 5.336 17 C 0.232 3.768 18 C 0.142 3.858 19 C -0.118 4.118 20 C -0.120 4.120 21 C -0.515 4.515 22 H 0.046 0.954 23 C 0.032 3.968 24 N -0.898 5.898 25 Si 0.944 3.056 26 H -0.282 1.282 27 H -0.275 1.275 28 H -0.282 1.282 29 H 0.121 0.879 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.101 0.899 33 H 0.118 0.882 34 H 0.075 0.925 35 H 0.039 0.961 36 H 0.050 0.950 37 H 0.104 0.896 38 H 0.046 0.954 39 H 0.056 0.944 40 H 0.073 0.927 41 H 0.060 0.940 42 H 0.054 0.946 43 H 0.056 0.944 44 H 0.073 0.927 45 H 0.101 0.899 46 H 0.051 0.949 47 H 0.035 0.965 48 H 0.076 0.924 49 H 0.037 0.963 50 H 0.082 0.918 51 H 0.015 0.985 52 H 0.011 0.989 53 H 0.073 0.927 54 H 0.059 0.941 55 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.707 -10.237 -21.293 25.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.208 4.208 3 C 0.016 3.984 4 N -0.152 5.152 5 C -0.031 4.031 6 N -0.174 5.174 7 C -0.057 4.057 8 C -0.060 4.060 9 N -0.274 5.274 10 C -0.030 4.030 11 C -0.205 4.205 12 C -0.200 4.200 13 C -0.058 4.058 14 C -0.057 4.057 15 N -0.198 5.198 16 N -0.174 5.174 17 C -0.037 4.037 18 C 0.139 3.861 19 C -0.176 4.176 20 C -0.178 4.178 21 C -0.554 4.554 22 H 0.065 0.935 23 C -0.167 4.167 24 N -0.538 5.538 25 Si 0.771 3.229 26 H -0.208 1.208 27 H -0.200 1.200 28 H -0.207 1.207 29 H 0.139 0.861 30 H 0.127 0.873 31 H 0.127 0.873 32 H 0.119 0.881 33 H 0.136 0.864 34 H 0.093 0.907 35 H 0.058 0.942 36 H 0.068 0.932 37 H 0.122 0.878 38 H 0.064 0.936 39 H 0.075 0.925 40 H 0.092 0.908 41 H 0.079 0.921 42 H 0.073 0.927 43 H 0.075 0.925 44 H 0.092 0.908 45 H 0.119 0.881 46 H 0.069 0.931 47 H 0.053 0.947 48 H 0.094 0.906 49 H 0.056 0.944 50 H 0.100 0.900 51 H 0.034 0.966 52 H 0.030 0.970 53 H 0.092 0.908 54 H 0.078 0.922 55 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 9.562 -10.162 -20.148 24.508 hybrid contribution -0.792 0.303 0.610 1.045 sum 8.770 -9.859 -19.538 23.576 Atomic orbital electron populations 1.24151 0.95195 1.03505 0.95466 1.22862 0.96518 0.97045 1.04364 1.21219 0.90410 0.98317 0.88443 1.46503 1.11151 1.45885 1.11661 1.22495 0.85161 1.02973 0.92470 1.59045 1.23412 1.04580 1.30354 1.22210 0.87008 0.97857 0.98598 1.22183 1.00685 0.88451 0.94697 1.62205 1.21806 1.02979 1.40455 1.21678 0.95598 0.95507 0.90266 1.21945 0.96627 0.99955 1.02012 1.21848 1.01679 0.94255 1.02218 1.22115 0.89403 0.99031 0.95241 1.22233 1.00307 0.84454 0.98677 1.74428 1.26094 1.18771 1.00546 1.74014 0.99563 1.17943 1.25897 1.25904 0.99026 0.98107 0.80673 1.16853 0.83486 0.91820 0.93895 1.21751 1.02401 0.96982 0.96489 1.21971 0.99637 0.95629 1.00592 1.21142 1.00940 1.41325 0.91981 0.93538 1.25317 0.94961 0.95046 1.01399 1.69851 1.04996 1.42735 1.36172 0.85832 0.77244 0.78017 0.81777 1.20810 1.20019 1.20741 0.86107 0.87323 0.87276 0.88126 0.86448 0.90657 0.94238 0.93185 0.87803 0.93617 0.92483 0.90760 0.92124 0.92704 0.92517 0.90829 0.88140 0.93066 0.94693 0.90552 0.94378 0.89979 0.96586 0.97003 0.90811 0.92223 0.92684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.24 12.36 67.78 0.84 -2.40 16 2 C -0.19 -4.77 9.14 25.64 0.23 -4.53 16 3 C 0.14 3.89 5.72 85.63 0.49 4.38 16 4 N -0.46 -17.39 2.79 -518.92 -1.45 -18.84 16 5 C 0.33 12.34 6.53 260.11 1.70 14.04 16 6 N -0.45 -12.79 4.73 -705.53 -3.33 -16.12 16 7 C 0.07 1.84 5.45 86.31 0.47 2.31 16 8 C 0.07 1.25 5.09 86.31 0.44 1.69 16 9 N -0.55 -9.89 4.58 -870.46 -3.98 -13.87 16 10 C 0.08 1.03 2.68 44.92 0.12 1.15 16 11 C -0.15 -1.70 8.66 71.98 0.62 -1.07 16 12 C -0.14 -1.69 9.10 71.98 0.65 -1.03 16 13 C 0.07 1.28 5.40 86.31 0.47 1.74 16 14 C 0.07 1.81 5.55 86.31 0.48 2.29 16 15 N -0.36 -16.54 12.02 -58.01 -0.70 -17.24 16 16 N -0.34 -17.61 11.02 -49.54 -0.55 -18.16 16 17 C 0.23 10.91 6.29 137.64 0.87 11.78 16 18 C 0.14 6.92 0.48 -53.67 -0.03 6.89 16 19 C -0.12 -5.39 8.04 71.98 0.58 -4.81 16 20 C -0.12 -5.29 6.93 71.98 0.50 -4.79 16 21 C -0.52 -28.94 7.91 25.60 0.20 -28.74 16 22 H 0.05 2.83 6.97 -2.91 -0.02 2.81 16 23 C 0.03 1.74 5.06 84.65 0.43 2.17 16 24 N -0.90 -47.44 9.42 21.45 0.20 -47.23 16 25 Si 0.94 44.61 29.54 68.60 2.03 46.64 16 26 H -0.28 -13.53 7.11 99.48 0.71 -12.83 16 27 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 28 H -0.28 -13.42 7.11 99.48 0.71 -12.72 16 29 H 0.12 2.23 8.06 -2.91 -0.02 2.21 16 30 H 0.11 2.38 6.78 -2.91 -0.02 2.36 16 31 H 0.11 2.73 8.06 -2.91 -0.02 2.71 16 32 H 0.10 2.88 4.45 -2.39 -0.01 2.87 16 33 H 0.12 2.80 8.14 -2.39 -0.02 2.78 16 34 H 0.07 2.00 8.13 -2.38 -0.02 1.98 16 35 H 0.04 1.22 8.08 -2.39 -0.02 1.20 16 36 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.10 1.61 6.00 -2.39 -0.01 1.60 16 38 H 0.05 0.58 8.13 -2.39 -0.02 0.56 16 39 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.06 0.67 6.25 -2.39 -0.01 0.65 16 42 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.06 0.66 6.46 -2.39 -0.02 0.64 16 44 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 45 H 0.10 1.55 6.30 -2.38 -0.02 1.53 16 46 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 47 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 48 H 0.08 1.95 8.13 -2.39 -0.02 1.93 16 49 H 0.04 1.45 6.02 -2.39 -0.01 1.44 16 50 H 0.08 3.99 6.21 -2.39 -0.01 3.97 16 51 H 0.01 0.74 8.14 -2.39 -0.02 0.72 16 52 H 0.01 0.50 8.04 -2.39 -0.02 0.48 16 53 H 0.07 3.62 5.82 -2.39 -0.01 3.60 16 54 H 0.06 2.16 3.09 -2.39 -0.01 2.15 16 55 H 0.26 13.35 8.31 -92.71 -0.77 12.58 16 Total: -1.00 -66.79 408.35 2.15 -64.64 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: 0.87 Total: 19.13 kcal Atomic # 6 Polarization: -8.00 SS G_CDS: 9.06 Total: 1.06 kcal Atomic # 7 Polarization: -121.66 SS G_CDS: -9.81 Total: -131.46 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -66.79 2.15 -64.64 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262968939.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.637 kcal (2) G-P(sol) polarization free energy of solvation -66.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds