Wall clock time and date at job start Wed Apr 1 2020 05:26:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31637 * 1
3 3 Si 1.86797 * 119.99703 * 2 1
4 4 H 1.48501 * 109.46887 * 180.02562 * 3 2 1
5 5 H 1.48499 * 109.47244 * 299.99994 * 3 2 1
6 6 H 1.48497 * 109.47213 * 60.00124 * 3 2 1
7 7 C 1.38800 * 120.00028 * 180.02562 * 2 1 3
8 8 H 1.07995 * 119.99446 * 180.02562 * 7 2 1
9 9 S 1.76198 * 119.99875 * 359.97438 * 7 2 1
10 10 C 1.81001 * 99.99838 * 180.02562 * 9 7 2
11 11 C 1.50696 * 109.47406 * 180.02562 * 10 9 7
12 12 O 1.21281 * 119.99694 * 359.97438 * 11 10 9
13 13 N 1.34777 * 120.00456 * 180.02562 * 11 10 9
14 14 C 1.46496 * 120.00345 * 180.02562 * 13 11 10
15 15 C 1.52992 * 109.47167 * 179.97438 * 14 13 11
16 16 N 1.46506 * 109.47162 * 179.97438 * 15 14 13
17 17 C 1.34773 * 119.99969 * 180.02562 * 16 15 14
18 18 O 1.21713 * 120.00375 * 359.71676 * 17 16 15
19 19 C 1.46446 * 120.00001 * 180.02562 * 17 16 15
20 20 S 1.75824 * 125.45842 * 359.74199 * 19 17 16
21 21 C 1.70608 * 91.58584 * 180.02562 * 20 19 17
22 22 C 1.33775 * 110.99924 * 359.97438 * 21 20 19
23 23 C 1.36789 * 125.46274 * 179.44036 * 19 17 16
24 24 Cl 1.73594 * 123.38036 * 359.97438 * 23 19 17
25 25 H 0.96996 * 119.99755 * 359.97438 * 1 2 3
26 26 H 1.09007 * 109.46970 * 59.99808 * 10 9 7
27 27 H 1.08993 * 109.47131 * 300.00100 * 10 9 7
28 28 H 0.97004 * 119.99652 * 359.97438 * 13 11 10
29 29 H 1.08995 * 109.47072 * 59.99266 * 14 13 11
30 30 H 1.09006 * 109.46714 * 299.99867 * 14 13 11
31 31 H 1.08995 * 109.47596 * 59.99743 * 15 14 13
32 32 H 1.09006 * 109.47322 * 299.99650 * 15 14 13
33 33 H 0.97004 * 120.00008 * 359.97438 * 16 15 14
34 34 H 1.07999 * 124.50295 * 179.97438 * 21 20 19
35 35 H 1.07994 * 122.45421 * 180.02562 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3164 0.0000 0.0000
3 14 2.2503 1.6178 0.0000
4 1 3.7103 1.3464 -0.0006
5 1 1.8915 2.3965 -1.2125
6 1 1.8915 2.3964 1.2125
7 6 2.0104 -1.2020 -0.0005
8 1 3.0903 -1.2019 -0.0001
9 16 1.1294 -2.7279 -0.0005
10 6 2.5159 -3.8914 -0.0005
11 6 1.9876 -5.3027 -0.0012
12 8 0.7913 -5.5023 -0.0011
13 7 2.8443 -6.3431 -0.0008
14 6 2.3306 -7.7150 -0.0019
15 6 3.5027 -8.6984 -0.0018
16 7 2.9890 -10.0705 -0.0024
17 6 3.8457 -11.1108 -0.0019
18 8 5.0463 -10.9105 -0.0061
19 6 3.3322 -12.4823 -0.0030
20 16 1.6334 -12.9353 0.0014
21 6 2.0272 -14.5953 -0.0024
22 6 3.3530 -14.7735 -0.0072
23 6 4.0973 -13.6161 -0.0135
24 17 5.8331 -13.5970 -0.0280
25 1 -0.4849 0.8400 0.0004
26 1 3.1246 -3.7312 0.8895
27 1 3.1245 -3.7313 -0.8905
28 1 3.8011 -6.1834 -0.0004
29 1 1.7229 -7.8747 -0.8925
30 1 1.7211 -7.8755 0.8874
31 1 4.1108 -8.5389 0.8886
32 1 4.1119 -8.5378 -0.8914
33 1 2.0321 -10.2301 -0.0024
34 1 1.3025 -15.3960 -0.0011
35 1 3.8060 -15.7538 -0.0106
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001282918751.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:26:27
Heat of formation + Delta-G solvation = -44.035733 kcal
Electronic energy + Delta-G solvation = -21373.253913 eV
Core-core repulsion = 17650.352547 eV
Total energy + Delta-G solvation = -3722.901366 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 348.016 amu
Computer time = 0.39 seconds
Orbital eigenvalues (eV)
-40.25726 -39.24407 -38.37993 -36.50706 -36.00211 -34.05138 -32.44459 -31.07649
-29.95530 -28.03671 -25.60042 -25.39591 -23.18797 -21.90104 -20.44340 -20.05914
-19.25974 -17.89242 -16.99240 -16.55177 -16.29325 -16.27831 -15.58638 -15.38120
-15.32271 -14.81755 -14.46912 -14.16352 -14.03272 -13.86257 -13.73136 -13.32765
-13.20001 -12.58748 -12.43372 -12.10624 -11.95019 -11.85196 -11.70598 -11.28038
-11.08015 -11.03810 -10.77501 -10.41826 -9.82883 -9.69316 -9.52137 -9.42432
-9.10369 -9.08495 -9.02529 -8.26358 -6.52481 -6.23649 -3.94380 -0.22258
0.58959 1.07987 1.62936 1.96791 2.40724 2.66725 3.00998 3.08770
3.20856 3.28306 3.33877 3.72034 4.15684 4.18697 4.33446 4.46670
4.52374 4.76899 5.02486 5.09000 5.11864 5.15115 5.29966 5.36552
5.54066 5.57796 5.68782 5.85837 5.87332 6.11133 6.45467 6.90718
7.57117 7.59168 7.67238 8.33887 8.50778 9.22080 10.83846
Molecular weight = 348.02amu
Principal moments of inertia in cm(-1)
A = 0.031247 B = 0.001555 C = 0.001483
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 895.879516 B =18004.760070 C =18874.863514
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.868 5.868
2 C 0.073 3.927
3 Si 0.919 3.081
4 H -0.271 1.271
5 H -0.280 1.280
6 H -0.280 1.280
7 C -0.535 4.535
8 H 0.074 0.926
9 S -0.060 6.060
10 C -0.154 4.154
11 C 0.535 3.465
12 O -0.516 6.516
13 N -0.736 5.736
14 C 0.110 3.890
15 C 0.111 3.889
16 N -0.723 5.723
17 C 0.589 3.411
18 O -0.506 6.506
19 C -0.270 4.270
20 S 0.249 5.751
21 C -0.219 4.219
22 C -0.145 4.145
23 C 0.020 3.980
24 Cl -0.012 7.012
25 H 0.268 0.732
26 H 0.091 0.909
27 H 0.091 0.909
28 H 0.402 0.598
29 H 0.073 0.927
30 H 0.073 0.927
31 H 0.080 0.920
32 H 0.080 0.920
33 H 0.400 0.600
34 H 0.180 0.820
35 H 0.156 0.844
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.446 -32.343 -0.004 32.979
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.503 5.503
2 C -0.136 4.136
3 Si 0.746 3.254
4 H -0.196 1.196
5 H -0.206 1.206
6 H -0.206 1.206
7 C -0.684 4.684
8 H 0.092 0.908
9 S 0.166 5.834
10 C -0.304 4.304
11 C 0.321 3.679
12 O -0.389 6.389
13 N -0.392 5.392
14 C -0.015 4.015
15 C -0.013 4.013
16 N -0.376 5.376
17 C 0.374 3.626
18 O -0.382 6.382
19 C -0.392 4.392
20 S 0.515 5.485
21 C -0.358 4.358
22 C -0.176 4.176
23 C -0.023 4.023
24 Cl 0.017 6.983
25 H 0.078 0.922
26 H 0.110 0.890
27 H 0.110 0.890
28 H 0.236 0.764
29 H 0.092 0.908
30 H 0.092 0.908
31 H 0.098 0.902
32 H 0.098 0.902
33 H 0.235 0.765
34 H 0.197 0.803
35 H 0.174 0.826
Dipole moment (debyes) X Y Z Total
from point charges 3.931 -31.601 -0.003 31.845
hybrid contribution 3.343 0.220 -0.004 3.351
sum 7.274 -31.381 -0.007 32.213
Atomic orbital electron populations
1.70028 1.05954 1.27376 1.46934 1.24999 0.95037 0.99064 0.94504
0.86107 0.79598 0.81829 0.77906 1.19598 1.20562 1.20558 1.22911
0.94977 0.91585 1.58880 0.90807 1.85390 1.04856 0.96396 1.96734
1.23531 1.06685 0.95056 1.05143 1.20328 0.86422 0.86214 0.74949
1.90708 1.15337 1.85546 1.47352 1.45796 1.10299 1.04777 1.78353
1.21316 0.95475 0.81440 1.03263 1.21504 0.96457 0.79540 1.03766
1.45612 1.09779 1.05844 1.76323 1.16683 0.86216 0.82555 0.77100
1.90916 1.14091 1.84773 1.48452 1.24499 0.98091 0.97325 1.19297
1.83229 1.01391 0.97628 1.66245 1.25259 1.00224 1.02552 1.07716
1.19802 0.92624 0.99175 1.05965 1.20383 0.87826 0.92466 1.01586
1.98420 1.05171 1.98714 1.96023 0.92222 0.89027 0.89036 0.76418
0.90841 0.90831 0.90201 0.90184 0.76529 0.80286 0.82625
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.87 -25.94 13.22 55.49 0.73 -25.21 16
2 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16
3 Si 0.92 21.27 29.55 -169.99 -5.02 16.25 16
4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16
5 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16
6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16
7 C -0.54 -15.09 9.50 30.94 0.29 -14.80 16
8 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16
9 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16
10 C -0.15 -2.99 6.16 36.00 0.22 -2.77 16
11 C 0.53 9.48 7.85 -10.99 -0.09 9.39 16
12 O -0.52 -11.18 15.86 5.56 0.09 -11.10 16
13 N -0.74 -8.97 5.56 -60.30 -0.33 -9.31 16
14 C 0.11 1.10 5.79 -4.05 -0.02 1.08 16
15 C 0.11 0.93 5.79 -4.04 -0.02 0.91 16
16 N -0.72 -5.82 5.55 -61.69 -0.34 -6.16 16
17 C 0.59 6.01 7.78 -12.96 -0.10 5.91 16
18 O -0.51 -6.77 15.09 5.18 0.08 -6.69 16
19 C -0.27 -2.27 6.45 -36.80 -0.24 -2.50 16
20 S 0.25 1.20 22.15 -107.50 -2.38 -1.18 16
21 C -0.22 -0.91 10.92 29.17 0.32 -0.59 16
22 C -0.14 -0.83 10.06 -41.38 -0.42 -1.24 16
23 C 0.02 0.17 6.39 -40.34 -0.26 -0.09 16
24 Cl -0.01 -0.12 27.24 -51.86 -1.41 -1.53 16
25 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16
26 H 0.09 1.64 8.14 -51.91 -0.42 1.22 16
27 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16
28 H 0.40 3.77 8.47 -40.82 -0.35 3.42 16
29 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16
30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16
31 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16
32 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16
33 H 0.40 2.38 7.58 -40.82 -0.31 2.07 16
34 H 0.18 0.24 8.06 -52.49 -0.42 -0.18 16
35 H 0.16 0.60 8.06 -52.49 -0.42 0.18 16
LS Contribution 355.42 15.07 5.36 5.36
Total: -1.00 -36.55 355.42 -9.44 -45.99
By element:
Atomic # 1 Polarization: 3.72 SS G_CDS: -3.58 Total: 0.14 kcal
Atomic # 6 Polarization: -2.32 SS G_CDS: -0.41 Total: -2.73 kcal
Atomic # 7 Polarization: -40.74 SS G_CDS: 0.06 Total: -40.68 kcal
Atomic # 8 Polarization: -17.95 SS G_CDS: 0.17 Total: -17.79 kcal
Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal
Atomic # 16 Polarization: -0.41 SS G_CDS: -4.59 Total: -5.00 kcal
Atomic # 17 Polarization: -0.12 SS G_CDS: -1.41 Total: -1.53 kcal
Total LS contribution 5.36 Total: 5.36 kcal
Total: -36.55 -9.44 -45.99 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001282918751.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 1.957 kcal
(2) G-P(sol) polarization free energy of solvation -36.553 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.596 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.439 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.993 kcal
(6) G-S(sol) free energy of system = (1) + (5) -44.036 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.40 seconds