Wall clock time and date at job start Wed Apr 1 2020 05:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31637 * 1 3 3 Si 1.86797 * 119.99703 * 2 1 4 4 H 1.48501 * 109.46887 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47244 * 299.99994 * 3 2 1 6 6 H 1.48497 * 109.47213 * 60.00124 * 3 2 1 7 7 C 1.38800 * 120.00028 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99446 * 180.02562 * 7 2 1 9 9 S 1.76198 * 119.99875 * 359.97438 * 7 2 1 10 10 C 1.81001 * 99.99838 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47406 * 180.02562 * 10 9 7 12 12 O 1.21281 * 119.99694 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00456 * 180.02562 * 11 10 9 14 14 C 1.46496 * 120.00345 * 180.02562 * 13 11 10 15 15 C 1.52992 * 109.47167 * 179.97438 * 14 13 11 16 16 N 1.46506 * 109.47162 * 179.97438 * 15 14 13 17 17 C 1.34773 * 119.99969 * 180.02562 * 16 15 14 18 18 O 1.21713 * 120.00375 * 359.71676 * 17 16 15 19 19 C 1.46446 * 120.00001 * 180.02562 * 17 16 15 20 20 S 1.75824 * 125.45842 * 359.74199 * 19 17 16 21 21 C 1.70608 * 91.58584 * 180.02562 * 20 19 17 22 22 C 1.33775 * 110.99924 * 359.97438 * 21 20 19 23 23 C 1.36789 * 125.46274 * 179.44036 * 19 17 16 24 24 Cl 1.73594 * 123.38036 * 359.97438 * 23 19 17 25 25 H 0.96996 * 119.99755 * 359.97438 * 1 2 3 26 26 H 1.09007 * 109.46970 * 59.99808 * 10 9 7 27 27 H 1.08993 * 109.47131 * 300.00100 * 10 9 7 28 28 H 0.97004 * 119.99652 * 359.97438 * 13 11 10 29 29 H 1.08995 * 109.47072 * 59.99266 * 14 13 11 30 30 H 1.09006 * 109.46714 * 299.99867 * 14 13 11 31 31 H 1.08995 * 109.47596 * 59.99743 * 15 14 13 32 32 H 1.09006 * 109.47322 * 299.99650 * 15 14 13 33 33 H 0.97004 * 120.00008 * 359.97438 * 16 15 14 34 34 H 1.07999 * 124.50295 * 179.97438 * 21 20 19 35 35 H 1.07994 * 122.45421 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0104 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0001 9 16 1.1294 -2.7279 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9876 -5.3027 -0.0012 12 8 0.7913 -5.5023 -0.0011 13 7 2.8443 -6.3431 -0.0008 14 6 2.3306 -7.7150 -0.0019 15 6 3.5027 -8.6984 -0.0018 16 7 2.9890 -10.0705 -0.0024 17 6 3.8457 -11.1108 -0.0019 18 8 5.0463 -10.9105 -0.0061 19 6 3.3322 -12.4823 -0.0030 20 16 1.6334 -12.9353 0.0014 21 6 2.0272 -14.5953 -0.0024 22 6 3.3530 -14.7735 -0.0072 23 6 4.0973 -13.6161 -0.0135 24 17 5.8331 -13.5970 -0.0280 25 1 -0.4849 0.8400 0.0004 26 1 3.1246 -3.7312 0.8895 27 1 3.1245 -3.7313 -0.8905 28 1 3.8011 -6.1834 -0.0004 29 1 1.7229 -7.8747 -0.8925 30 1 1.7211 -7.8755 0.8874 31 1 4.1108 -8.5389 0.8886 32 1 4.1119 -8.5378 -0.8914 33 1 2.0321 -10.2301 -0.0024 34 1 1.3025 -15.3960 -0.0011 35 1 3.8060 -15.7538 -0.0106 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282918751.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:26:27 Heat of formation + Delta-G solvation = -44.035733 kcal Electronic energy + Delta-G solvation = -21373.253913 eV Core-core repulsion = 17650.352547 eV Total energy + Delta-G solvation = -3722.901366 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 348.016 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.25726 -39.24407 -38.37993 -36.50706 -36.00211 -34.05138 -32.44459 -31.07649 -29.95530 -28.03671 -25.60042 -25.39591 -23.18797 -21.90104 -20.44340 -20.05914 -19.25974 -17.89242 -16.99240 -16.55177 -16.29325 -16.27831 -15.58638 -15.38120 -15.32271 -14.81755 -14.46912 -14.16352 -14.03272 -13.86257 -13.73136 -13.32765 -13.20001 -12.58748 -12.43372 -12.10624 -11.95019 -11.85196 -11.70598 -11.28038 -11.08015 -11.03810 -10.77501 -10.41826 -9.82883 -9.69316 -9.52137 -9.42432 -9.10369 -9.08495 -9.02529 -8.26358 -6.52481 -6.23649 -3.94380 -0.22258 0.58959 1.07987 1.62936 1.96791 2.40724 2.66725 3.00998 3.08770 3.20856 3.28306 3.33877 3.72034 4.15684 4.18697 4.33446 4.46670 4.52374 4.76899 5.02486 5.09000 5.11864 5.15115 5.29966 5.36552 5.54066 5.57796 5.68782 5.85837 5.87332 6.11133 6.45467 6.90718 7.57117 7.59168 7.67238 8.33887 8.50778 9.22080 10.83846 Molecular weight = 348.02amu Principal moments of inertia in cm(-1) A = 0.031247 B = 0.001555 C = 0.001483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.879516 B =18004.760070 C =18874.863514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.074 0.926 9 S -0.060 6.060 10 C -0.154 4.154 11 C 0.535 3.465 12 O -0.516 6.516 13 N -0.736 5.736 14 C 0.110 3.890 15 C 0.111 3.889 16 N -0.723 5.723 17 C 0.589 3.411 18 O -0.506 6.506 19 C -0.270 4.270 20 S 0.249 5.751 21 C -0.219 4.219 22 C -0.145 4.145 23 C 0.020 3.980 24 Cl -0.012 7.012 25 H 0.268 0.732 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.402 0.598 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.400 0.600 34 H 0.180 0.820 35 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.446 -32.343 -0.004 32.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.684 4.684 8 H 0.092 0.908 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.321 3.679 12 O -0.389 6.389 13 N -0.392 5.392 14 C -0.015 4.015 15 C -0.013 4.013 16 N -0.376 5.376 17 C 0.374 3.626 18 O -0.382 6.382 19 C -0.392 4.392 20 S 0.515 5.485 21 C -0.358 4.358 22 C -0.176 4.176 23 C -0.023 4.023 24 Cl 0.017 6.983 25 H 0.078 0.922 26 H 0.110 0.890 27 H 0.110 0.890 28 H 0.236 0.764 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.235 0.765 34 H 0.197 0.803 35 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 3.931 -31.601 -0.003 31.845 hybrid contribution 3.343 0.220 -0.004 3.351 sum 7.274 -31.381 -0.007 32.213 Atomic orbital electron populations 1.70028 1.05954 1.27376 1.46934 1.24999 0.95037 0.99064 0.94504 0.86107 0.79598 0.81829 0.77906 1.19598 1.20562 1.20558 1.22911 0.94977 0.91585 1.58880 0.90807 1.85390 1.04856 0.96396 1.96734 1.23531 1.06685 0.95056 1.05143 1.20328 0.86422 0.86214 0.74949 1.90708 1.15337 1.85546 1.47352 1.45796 1.10299 1.04777 1.78353 1.21316 0.95475 0.81440 1.03263 1.21504 0.96457 0.79540 1.03766 1.45612 1.09779 1.05844 1.76323 1.16683 0.86216 0.82555 0.77100 1.90916 1.14091 1.84773 1.48452 1.24499 0.98091 0.97325 1.19297 1.83229 1.01391 0.97628 1.66245 1.25259 1.00224 1.02552 1.07716 1.19802 0.92624 0.99175 1.05965 1.20383 0.87826 0.92466 1.01586 1.98420 1.05171 1.98714 1.96023 0.92222 0.89027 0.89036 0.76418 0.90841 0.90831 0.90201 0.90184 0.76529 0.80286 0.82625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.94 13.22 55.49 0.73 -25.21 16 2 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 3 Si 0.92 21.27 29.55 -169.99 -5.02 16.25 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.54 -15.09 9.50 30.94 0.29 -14.80 16 8 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 9 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 10 C -0.15 -2.99 6.16 36.00 0.22 -2.77 16 11 C 0.53 9.48 7.85 -10.99 -0.09 9.39 16 12 O -0.52 -11.18 15.86 5.56 0.09 -11.10 16 13 N -0.74 -8.97 5.56 -60.30 -0.33 -9.31 16 14 C 0.11 1.10 5.79 -4.05 -0.02 1.08 16 15 C 0.11 0.93 5.79 -4.04 -0.02 0.91 16 16 N -0.72 -5.82 5.55 -61.69 -0.34 -6.16 16 17 C 0.59 6.01 7.78 -12.96 -0.10 5.91 16 18 O -0.51 -6.77 15.09 5.18 0.08 -6.69 16 19 C -0.27 -2.27 6.45 -36.80 -0.24 -2.50 16 20 S 0.25 1.20 22.15 -107.50 -2.38 -1.18 16 21 C -0.22 -0.91 10.92 29.17 0.32 -0.59 16 22 C -0.14 -0.83 10.06 -41.38 -0.42 -1.24 16 23 C 0.02 0.17 6.39 -40.34 -0.26 -0.09 16 24 Cl -0.01 -0.12 27.24 -51.86 -1.41 -1.53 16 25 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 26 H 0.09 1.64 8.14 -51.91 -0.42 1.22 16 27 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 28 H 0.40 3.77 8.47 -40.82 -0.35 3.42 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.40 2.38 7.58 -40.82 -0.31 2.07 16 34 H 0.18 0.24 8.06 -52.49 -0.42 -0.18 16 35 H 0.16 0.60 8.06 -52.49 -0.42 0.18 16 LS Contribution 355.42 15.07 5.36 5.36 Total: -1.00 -36.55 355.42 -9.44 -45.99 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: -3.58 Total: 0.14 kcal Atomic # 6 Polarization: -2.32 SS G_CDS: -0.41 Total: -2.73 kcal Atomic # 7 Polarization: -40.74 SS G_CDS: 0.06 Total: -40.68 kcal Atomic # 8 Polarization: -17.95 SS G_CDS: 0.17 Total: -17.79 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: -0.41 SS G_CDS: -4.59 Total: -5.00 kcal Atomic # 17 Polarization: -0.12 SS G_CDS: -1.41 Total: -1.53 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -36.55 -9.44 -45.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282918751.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.957 kcal (2) G-P(sol) polarization free energy of solvation -36.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds