Wall clock time and date at job start Wed Apr 1 2020 05:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31637 * 1 3 3 Si 1.86797 * 119.99703 * 2 1 4 4 H 1.48501 * 109.46887 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47244 * 299.99994 * 3 2 1 6 6 H 1.48497 * 109.47213 * 60.00124 * 3 2 1 7 7 C 1.38800 * 120.00028 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99446 * 180.02562 * 7 2 1 9 9 S 1.76198 * 119.99875 * 359.97438 * 7 2 1 10 10 C 1.81001 * 99.99838 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47406 * 180.02562 * 10 9 7 12 12 O 1.21281 * 119.99694 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00456 * 180.02562 * 11 10 9 14 14 C 1.46496 * 120.00345 * 180.02562 * 13 11 10 15 15 C 1.52992 * 109.47167 * 179.97438 * 14 13 11 16 16 N 1.46506 * 109.47162 * 179.97438 * 15 14 13 17 17 C 1.34773 * 119.99969 * 180.02562 * 16 15 14 18 18 O 1.21713 * 120.00375 * 359.71676 * 17 16 15 19 19 C 1.46446 * 120.00001 * 180.02562 * 17 16 15 20 20 S 1.75824 * 125.45842 * 359.74199 * 19 17 16 21 21 C 1.70608 * 91.58584 * 180.02562 * 20 19 17 22 22 C 1.33775 * 110.99924 * 359.97438 * 21 20 19 23 23 C 1.36789 * 125.46274 * 179.44036 * 19 17 16 24 24 Cl 1.73594 * 123.38036 * 359.97438 * 23 19 17 25 25 H 0.96996 * 119.99755 * 359.97438 * 1 2 3 26 26 H 1.09007 * 109.46970 * 59.99808 * 10 9 7 27 27 H 1.08993 * 109.47131 * 300.00100 * 10 9 7 28 28 H 0.97004 * 119.99652 * 359.97438 * 13 11 10 29 29 H 1.08995 * 109.47072 * 59.99266 * 14 13 11 30 30 H 1.09006 * 109.46714 * 299.99867 * 14 13 11 31 31 H 1.08995 * 109.47596 * 59.99743 * 15 14 13 32 32 H 1.09006 * 109.47322 * 299.99650 * 15 14 13 33 33 H 0.97004 * 120.00008 * 359.97438 * 16 15 14 34 34 H 1.07999 * 124.50295 * 179.97438 * 21 20 19 35 35 H 1.07994 * 122.45421 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0104 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0001 9 16 1.1294 -2.7279 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9876 -5.3027 -0.0012 12 8 0.7913 -5.5023 -0.0011 13 7 2.8443 -6.3431 -0.0008 14 6 2.3306 -7.7150 -0.0019 15 6 3.5027 -8.6984 -0.0018 16 7 2.9890 -10.0705 -0.0024 17 6 3.8457 -11.1108 -0.0019 18 8 5.0463 -10.9105 -0.0061 19 6 3.3322 -12.4823 -0.0030 20 16 1.6334 -12.9353 0.0014 21 6 2.0272 -14.5953 -0.0024 22 6 3.3530 -14.7735 -0.0072 23 6 4.0973 -13.6161 -0.0135 24 17 5.8331 -13.5970 -0.0280 25 1 -0.4849 0.8400 0.0004 26 1 3.1246 -3.7312 0.8895 27 1 3.1245 -3.7313 -0.8905 28 1 3.8011 -6.1834 -0.0004 29 1 1.7229 -7.8747 -0.8925 30 1 1.7211 -7.8755 0.8874 31 1 4.1108 -8.5389 0.8886 32 1 4.1119 -8.5378 -0.8914 33 1 2.0321 -10.2301 -0.0024 34 1 1.3025 -15.3960 -0.0011 35 1 3.8060 -15.7538 -0.0106 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282918751.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:26:26 Heat of formation + Delta-G solvation = -71.415118 kcal Electronic energy + Delta-G solvation = -21374.441172 eV Core-core repulsion = 17650.352547 eV Total energy + Delta-G solvation = -3724.088625 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 348.016 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.03028 -40.53346 -38.93949 -37.11104 -36.95564 -35.10048 -34.57461 -31.99717 -30.94957 -29.07455 -27.64374 -26.04507 -23.97965 -22.62023 -21.72454 -20.60690 -19.94399 -19.73449 -17.97485 -17.39001 -17.31767 -17.14187 -16.87401 -16.69544 -16.38869 -16.05617 -15.66227 -15.41945 -14.76846 -14.67321 -14.51707 -14.46722 -14.39262 -13.78570 -13.66851 -13.15096 -12.93642 -12.92609 -12.84232 -12.58582 -12.53950 -12.31938 -11.87743 -11.70940 -11.23346 -11.15153 -10.99128 -10.41132 -10.26671 -10.18065 -9.93304 -9.52724 -8.65278 -8.34391 -6.11776 -0.73495 0.10700 0.68514 1.15649 1.24524 1.39212 1.41905 1.45198 1.56514 1.59325 1.79713 1.96749 2.27607 2.49703 3.00042 3.32671 3.52344 3.70053 3.97524 3.99276 4.00475 4.12725 4.32287 4.37149 4.53904 4.64524 4.79480 4.82318 4.92372 4.97797 5.12469 5.36025 5.43477 6.20923 6.25087 6.44658 6.97090 7.07547 7.19993 8.74984 Molecular weight = 348.02amu Principal moments of inertia in cm(-1) A = 0.031247 B = 0.001555 C = 0.001483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.879516 B =18004.760070 C =18874.863514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 0.998 3.002 4 H -0.257 1.257 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.546 4.546 8 H 0.083 0.917 9 S -0.149 6.149 10 C -0.132 4.132 11 C 0.538 3.462 12 O -0.561 6.561 13 N -0.712 5.712 14 C 0.114 3.886 15 C 0.122 3.878 16 N -0.714 5.714 17 C 0.586 3.414 18 O -0.547 6.547 19 C -0.308 4.308 20 S 0.298 5.702 21 C -0.203 4.203 22 C -0.160 4.160 23 C 0.009 3.991 24 Cl -0.036 7.036 25 H 0.271 0.729 26 H 0.111 0.889 27 H 0.111 0.889 28 H 0.419 0.581 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.411 0.589 34 H 0.214 0.786 35 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.997 -33.474 0.003 34.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.191 4.191 3 Si 0.820 3.180 4 H -0.181 1.181 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.694 4.694 8 H 0.101 0.899 9 S 0.078 5.922 10 C -0.283 4.283 11 C 0.324 3.676 12 O -0.439 6.439 13 N -0.367 5.367 14 C -0.010 4.010 15 C -0.002 4.002 16 N -0.367 5.367 17 C 0.373 3.627 18 O -0.426 6.426 19 C -0.429 4.429 20 S 0.565 5.435 21 C -0.341 4.341 22 C -0.189 4.189 23 C -0.035 4.035 24 Cl -0.008 7.008 25 H 0.080 0.920 26 H 0.129 0.871 27 H 0.129 0.871 28 H 0.256 0.744 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.247 0.753 34 H 0.231 0.769 35 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 4.502 -32.768 0.004 33.076 hybrid contribution 3.117 0.395 -0.006 3.142 sum 7.619 -32.374 -0.002 33.258 Atomic orbital electron populations 1.70184 1.07913 1.28530 1.48095 1.26107 0.95963 1.03262 0.93784 0.84917 0.78609 0.76445 0.78053 1.18113 1.19973 1.19961 1.23249 0.95388 0.92069 1.58705 0.89907 1.85533 1.10450 0.99158 1.97053 1.23382 1.03648 0.94247 1.07004 1.19986 0.86125 0.86507 0.74991 1.90699 1.17236 1.86012 1.49945 1.45494 1.10628 1.04606 1.75943 1.21380 0.96055 0.80134 1.03437 1.21348 0.95579 0.79333 1.03987 1.45509 1.10261 1.05343 1.75599 1.16974 0.85856 0.83520 0.76338 1.90886 1.15709 1.85512 1.50511 1.24507 1.00534 0.96385 1.21463 1.83067 0.98124 0.97695 1.64622 1.25730 1.00228 1.03215 1.04892 1.19948 0.93114 0.99034 1.06850 1.20708 0.86847 0.93670 1.02271 1.98403 1.07360 1.98795 1.96196 0.91998 0.87062 0.87073 0.74403 0.90706 0.90692 0.90025 0.90018 0.75254 0.76905 0.81068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.42 13.22 21.65 0.29 -55.13 16 2 C 0.01 0.77 5.49 84.86 0.47 1.23 16 3 Si 1.00 43.32 29.55 68.60 2.03 45.35 16 4 H -0.26 -10.46 7.11 99.48 0.71 -9.76 16 5 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 6 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 7 C -0.55 -30.84 9.50 67.95 0.65 -30.19 16 8 H 0.08 4.35 7.80 -2.91 -0.02 4.32 16 9 S -0.15 -8.11 20.57 -56.49 -1.16 -9.27 16 10 C -0.13 -4.99 6.16 71.23 0.44 -4.56 16 11 C 0.54 18.54 7.85 87.66 0.69 19.23 16 12 O -0.56 -24.43 15.86 -3.03 -0.05 -24.48 16 13 N -0.71 -15.94 5.56 -463.08 -2.57 -18.52 16 14 C 0.11 2.09 5.79 86.38 0.50 2.59 16 15 C 0.12 1.85 5.79 86.38 0.50 2.35 16 16 N -0.71 -10.64 5.55 -467.31 -2.59 -13.24 16 17 C 0.59 11.72 7.78 86.38 0.67 12.39 16 18 O -0.55 -14.82 15.09 -4.39 -0.07 -14.89 16 19 C -0.31 -4.88 6.45 24.07 0.16 -4.72 16 20 S 0.30 2.14 22.15 -56.49 -1.25 0.89 16 21 C -0.20 -1.04 10.92 66.81 0.73 -0.31 16 22 C -0.16 -1.52 10.06 21.11 0.21 -1.31 16 23 C 0.01 0.15 6.39 21.78 0.14 0.29 16 24 Cl -0.04 -0.73 27.24 -2.72 -0.07 -0.80 16 25 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 26 H 0.11 3.79 8.14 -2.39 -0.02 3.77 16 27 H 0.11 3.78 8.14 -2.40 -0.02 3.77 16 28 H 0.42 6.73 8.47 -92.71 -0.79 5.94 16 29 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.07 1.42 8.14 -2.38 -0.02 1.41 16 31 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 33 H 0.41 4.22 7.58 -92.71 -0.70 3.51 16 34 H 0.21 -0.41 8.06 -2.91 -0.02 -0.43 16 35 H 0.17 0.99 8.06 -2.91 -0.02 0.97 16 Total: -1.00 -82.28 355.42 -0.63 -82.91 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -0.32 Total: 10.18 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: 5.15 Total: -3.01 kcal Atomic # 7 Polarization: -82.01 SS G_CDS: -4.88 Total: -86.89 kcal Atomic # 8 Polarization: -39.25 SS G_CDS: -0.11 Total: -39.36 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Atomic # 16 Polarization: -5.97 SS G_CDS: -2.41 Total: -8.38 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -0.07 Total: -0.80 kcal Total: -82.28 -0.63 -82.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282918751.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.499 kcal (2) G-P(sol) polarization free energy of solvation -82.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds