Wall clock time and date at job start Wed Apr 1 2020 05:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 S 1.70438 * 124.60103 * 2 1 4 4 C 1.75498 * 92.45602 * 180.02562 * 3 2 1 5 5 S 1.76202 * 124.69835 * 180.02562 * 4 3 2 6 6 N 1.65594 * 107.21973 * 269.96968 * 5 4 3 7 7 O 1.42100 * 106.40203 * 23.51466 * 5 4 3 8 8 O 1.42103 * 106.39936 * 156.43266 * 5 4 3 9 9 C 1.32736 * 110.59729 * 359.70977 * 4 3 2 10 10 C 1.36103 * 124.59187 * 180.02562 * 2 1 3 11 11 C 1.47032 * 123.47592 * 359.97438 * 10 2 1 12 12 O 1.21561 * 120.00202 * 0.27257 * 11 10 2 13 13 O 1.34804 * 119.99850 * 180.02562 * 11 10 2 14 14 C 1.45196 * 116.99843 * 180.02562 * 13 11 10 15 15 C 1.50703 * 109.47396 * 180.02562 * 14 13 11 16 16 O 1.21296 * 119.99601 * 359.97438 * 15 14 13 17 17 N 1.34768 * 120.00290 * 179.97438 * 15 14 13 18 18 C 1.37100 * 120.00116 * 179.97438 * 17 15 14 19 19 H 1.08005 * 119.99903 * 0.02562 * 18 17 15 20 20 C 1.38947 * 120.00079 * 179.97438 * 18 17 15 21 21 N 1.31413 * 120.00112 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00018 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.46929 * 59.99713 * 22 20 18 24 24 H 1.48497 * 109.47223 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.46965 * 300.00174 * 22 20 18 26 26 H 1.08996 * 109.47033 * 269.98459 * 1 2 3 27 27 H 1.08998 * 109.46763 * 29.97494 * 1 2 3 28 28 H 1.08992 * 109.47341 * 149.97474 * 1 2 3 29 29 H 0.97004 * 120.00182 * 0.02562 * 6 5 4 30 30 H 0.97000 * 120.00314 * 180.02562 * 6 5 4 31 31 H 1.08007 * 123.45400 * 180.25253 * 9 4 3 32 32 H 1.09012 * 109.47257 * 299.99882 * 14 13 11 33 33 H 1.08996 * 109.47465 * 59.99938 * 14 13 11 34 34 H 0.97004 * 120.00223 * 359.97438 * 17 15 14 35 35 H 0.96998 * 119.99852 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4749 1.4029 0.0000 4 6 3.9608 0.4692 -0.0008 5 16 5.5809 1.1621 -0.0006 6 7 6.0318 1.3551 -1.5822 7 8 5.4584 2.4688 0.5442 8 8 6.4412 0.1707 0.5438 9 6 3.6951 -0.8313 0.0053 10 6 2.2797 -1.1204 -0.0005 11 6 1.7306 -2.4843 -0.0006 12 8 0.5270 -2.6550 -0.0052 13 8 2.5618 -3.5456 -0.0006 14 6 1.9497 -4.8622 -0.0012 15 6 3.0263 -5.9168 -0.0004 16 8 4.1946 -5.5906 0.0001 17 7 2.6911 -7.2221 -0.0003 18 6 3.6706 -8.1814 -0.0002 19 1 4.7108 -7.8910 0.0003 20 6 3.3249 -9.5272 0.0005 21 7 2.0592 -9.8805 0.0004 22 14 4.6595 -10.8343 0.0014 23 1 5.5028 -10.6798 1.2139 24 1 4.0335 -12.1809 0.0013 25 1 5.5032 -10.6811 -1.2110 26 1 -0.3633 -0.0003 1.0276 27 1 -0.3633 0.8902 -0.5134 28 1 -0.3633 -0.8897 -0.5142 29 1 5.4259 1.0965 -2.2943 30 1 6.9017 1.7268 -1.7967 31 1 4.4588 -1.5950 0.0100 32 1 1.3302 -4.9754 0.8886 33 1 1.3310 -4.9749 -0.8914 34 1 1.7568 -7.4829 -0.0004 35 1 1.8179 -10.8200 0.0012 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322588840.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:25 Heat of formation + Delta-G solvation = -163.994659 kcal Electronic energy + Delta-G solvation = -25049.209752 eV Core-core repulsion = 20880.397413 eV Total energy + Delta-G solvation = -4168.812340 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.037 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -40.54336 -38.43983 -37.70329 -37.32068 -36.16492 -36.12578 -34.02435 -33.55315 -32.60976 -31.40747 -29.13128 -27.63917 -24.94024 -24.03698 -22.87198 -20.25145 -19.64632 -19.61927 -18.58503 -18.11078 -17.75767 -17.49113 -16.89085 -16.48410 -16.44150 -15.88027 -15.61433 -15.32212 -14.69991 -14.57670 -14.06065 -13.93916 -13.80844 -13.38577 -13.02393 -12.83255 -12.65659 -12.47734 -12.38218 -12.33331 -12.26590 -12.09816 -11.76313 -11.63141 -11.48707 -11.12384 -10.85543 -10.50402 -10.49788 -10.42176 -10.29573 -9.70981 -9.61085 -9.01522 -8.55199 -8.10177 -6.51582 -3.93716 -0.14067 0.08271 0.80614 1.14088 1.15671 2.67859 2.75105 2.84264 3.14820 3.22307 3.27315 3.27947 3.71376 4.09771 4.13817 4.35917 4.57504 4.62594 4.92219 5.09742 5.12990 5.14701 5.21271 5.29511 5.51718 5.62408 5.64380 5.67494 5.75589 6.02285 6.49890 6.64573 7.46393 7.70880 7.92615 8.46306 9.05363 9.37019 9.86799 10.65539 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.015182 B = 0.002506 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.858456 B =11170.400643 C =12820.764349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.102 4.102 3 S 0.308 5.692 4 C -0.828 4.828 5 S 2.731 3.269 6 N -1.248 6.248 7 O -0.959 6.959 8 O -0.947 6.947 9 C 0.072 3.928 10 C -0.180 4.180 11 C 0.527 3.473 12 O -0.507 6.507 13 O -0.318 6.318 14 C 0.062 3.938 15 C 0.437 3.563 16 O -0.574 6.574 17 N -0.552 5.552 18 C -0.303 4.303 19 H 0.106 0.894 20 C 0.026 3.974 21 N -0.898 5.898 22 Si 0.935 3.065 23 H -0.272 1.272 24 H -0.283 1.283 25 H -0.272 1.272 26 H 0.093 0.907 27 H 0.076 0.924 28 H 0.111 0.889 29 H 0.418 0.582 30 H 0.422 0.578 31 H 0.180 0.820 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.395 0.605 35 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.311 24.342 -3.850 24.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.224 4.224 3 S 0.576 5.424 4 C -1.027 5.027 5 S 2.815 3.185 6 N -0.924 5.924 7 O -0.948 6.948 8 O -0.936 6.936 9 C 0.040 3.960 10 C -0.195 4.195 11 C 0.370 3.630 12 O -0.399 6.399 13 O -0.233 6.233 14 C -0.015 4.015 15 C 0.222 3.778 16 O -0.458 6.458 17 N -0.189 5.189 18 C -0.432 4.432 19 H 0.124 0.876 20 C -0.177 4.177 21 N -0.538 5.538 22 Si 0.761 3.239 23 H -0.197 1.197 24 H -0.209 1.209 25 H -0.197 1.197 26 H 0.111 0.889 27 H 0.095 0.905 28 H 0.130 0.870 29 H 0.245 0.755 30 H 0.253 0.747 31 H 0.197 0.803 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.228 0.772 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.815 26.026 -2.898 26.250 hybrid contribution -0.413 -2.856 -0.665 2.961 sum -2.228 23.170 -3.563 23.548 Atomic orbital electron populations 1.20875 0.85612 1.05387 1.04679 1.25232 1.02829 0.97877 0.96459 1.83002 0.89776 1.02999 1.66649 1.35303 1.26435 1.08225 1.32761 1.00909 0.71709 0.73667 0.72241 1.53006 1.29557 1.83338 1.26528 1.93615 1.85853 1.38747 1.76607 1.93663 1.62563 1.60996 1.76368 1.21383 0.95868 0.94471 0.84311 1.19451 0.92820 0.91114 1.16155 1.20235 0.84638 0.85062 0.73037 1.90790 1.15661 1.86582 1.46835 1.86618 1.39034 1.14674 1.82942 1.22804 0.96034 0.79035 1.03660 1.19286 0.89096 0.83285 0.86165 1.90576 1.19046 1.81017 1.55181 1.41686 1.10121 1.03292 1.63781 1.19691 0.90175 0.85049 1.48308 0.87606 1.25311 0.97301 0.98262 0.96814 1.69605 1.16002 1.18629 1.49577 0.85853 0.79984 0.78787 0.79248 1.19704 1.20876 1.19730 0.88908 0.90497 0.87025 0.75466 0.74713 0.80254 0.89348 0.89348 0.77158 0.91559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 49. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.88 9.61 36.01 0.35 -0.53 16 2 C -0.10 -1.02 6.35 -35.07 -0.22 -1.24 16 3 S 0.31 2.51 22.81 -107.50 -2.45 0.06 16 4 C -0.83 -8.15 6.48 28.85 0.19 -7.97 16 5 S 2.73 25.92 6.42 -107.50 -0.69 25.23 16 6 N -1.25 -6.77 9.55 60.35 0.58 -6.19 16 7 O -0.96 -11.12 17.88 -57.17 -1.02 -12.15 16 8 O -0.95 -12.79 17.77 -57.17 -1.02 -13.81 16 9 C 0.07 0.85 9.75 -39.01 -0.38 0.47 16 10 C -0.18 -2.29 5.98 -104.65 -0.63 -2.91 16 11 C 0.53 8.20 7.92 34.30 0.27 8.48 16 12 O -0.51 -8.14 13.85 -19.31 -0.27 -8.41 16 13 O -0.32 -5.81 9.48 -47.46 -0.45 -6.26 16 14 C 0.06 1.15 5.95 36.01 0.21 1.37 16 15 C 0.44 10.39 7.86 -10.99 -0.09 10.31 16 16 O -0.57 -15.80 16.08 -14.12 -0.23 -16.03 16 17 N -0.55 -13.79 5.29 -10.96 -0.06 -13.84 16 18 C -0.30 -8.31 9.68 -14.93 -0.14 -8.46 16 19 H 0.11 3.03 7.16 -52.48 -0.38 2.65 16 20 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 21 N -0.90 -23.91 13.05 55.50 0.72 -23.18 16 22 Si 0.93 20.64 29.55 -169.99 -5.02 15.62 16 23 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 24 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 25 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 26 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.11 1.12 5.94 -51.93 -0.31 0.82 16 29 H 0.42 1.37 8.92 -34.47 -0.31 1.06 16 30 H 0.42 1.54 8.96 -34.47 -0.31 1.23 16 31 H 0.18 2.23 8.05 -52.48 -0.42 1.80 16 32 H 0.09 1.48 8.14 -51.92 -0.42 1.06 16 33 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 34 H 0.39 9.32 7.90 -40.82 -0.32 9.00 16 35 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 345.90 15.07 5.21 5.21 Total: -1.00 -36.88 345.90 -8.10 -44.98 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -2.87 Total: 8.68 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: -0.54 Total: 0.09 kcal Atomic # 7 Polarization: -44.46 SS G_CDS: 1.24 Total: -43.22 kcal Atomic # 8 Polarization: -53.67 SS G_CDS: -2.98 Total: -56.65 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Atomic # 16 Polarization: 28.44 SS G_CDS: -3.14 Total: 25.29 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -36.88 -8.10 -44.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322588840.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.019 kcal (2) G-P(sol) polarization free energy of solvation -36.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds