Wall clock time and date at job start Wed Apr 1 2020 05:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 S 1.70438 * 124.60103 * 2 1 4 4 C 1.75498 * 92.45602 * 180.02562 * 3 2 1 5 5 S 1.76202 * 124.69835 * 180.02562 * 4 3 2 6 6 N 1.65594 * 107.21973 * 269.96968 * 5 4 3 7 7 O 1.42100 * 106.40203 * 23.51466 * 5 4 3 8 8 O 1.42103 * 106.39936 * 156.43266 * 5 4 3 9 9 C 1.32736 * 110.59729 * 359.70977 * 4 3 2 10 10 C 1.36103 * 124.59187 * 180.02562 * 2 1 3 11 11 C 1.47032 * 123.47592 * 359.97438 * 10 2 1 12 12 O 1.21561 * 120.00202 * 0.27257 * 11 10 2 13 13 O 1.34804 * 119.99850 * 180.02562 * 11 10 2 14 14 C 1.45196 * 116.99843 * 180.02562 * 13 11 10 15 15 C 1.50703 * 109.47396 * 180.02562 * 14 13 11 16 16 O 1.21296 * 119.99601 * 359.97438 * 15 14 13 17 17 N 1.34768 * 120.00290 * 179.97438 * 15 14 13 18 18 C 1.37100 * 120.00116 * 179.97438 * 17 15 14 19 19 H 1.08005 * 119.99903 * 0.02562 * 18 17 15 20 20 C 1.38947 * 120.00079 * 179.97438 * 18 17 15 21 21 N 1.31413 * 120.00112 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00018 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.46929 * 59.99713 * 22 20 18 24 24 H 1.48497 * 109.47223 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.46965 * 300.00174 * 22 20 18 26 26 H 1.08996 * 109.47033 * 269.98459 * 1 2 3 27 27 H 1.08998 * 109.46763 * 29.97494 * 1 2 3 28 28 H 1.08992 * 109.47341 * 149.97474 * 1 2 3 29 29 H 0.97004 * 120.00182 * 0.02562 * 6 5 4 30 30 H 0.97000 * 120.00314 * 180.02562 * 6 5 4 31 31 H 1.08007 * 123.45400 * 180.25253 * 9 4 3 32 32 H 1.09012 * 109.47257 * 299.99882 * 14 13 11 33 33 H 1.08996 * 109.47465 * 59.99938 * 14 13 11 34 34 H 0.97004 * 120.00223 * 359.97438 * 17 15 14 35 35 H 0.96998 * 119.99852 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4749 1.4029 0.0000 4 6 3.9608 0.4692 -0.0008 5 16 5.5809 1.1621 -0.0006 6 7 6.0318 1.3551 -1.5822 7 8 5.4584 2.4688 0.5442 8 8 6.4412 0.1707 0.5438 9 6 3.6951 -0.8313 0.0053 10 6 2.2797 -1.1204 -0.0005 11 6 1.7306 -2.4843 -0.0006 12 8 0.5270 -2.6550 -0.0052 13 8 2.5618 -3.5456 -0.0006 14 6 1.9497 -4.8622 -0.0012 15 6 3.0263 -5.9168 -0.0004 16 8 4.1946 -5.5906 0.0001 17 7 2.6911 -7.2221 -0.0003 18 6 3.6706 -8.1814 -0.0002 19 1 4.7108 -7.8910 0.0003 20 6 3.3249 -9.5272 0.0005 21 7 2.0592 -9.8805 0.0004 22 14 4.6595 -10.8343 0.0014 23 1 5.5028 -10.6798 1.2139 24 1 4.0335 -12.1809 0.0013 25 1 5.5032 -10.6811 -1.2110 26 1 -0.3633 -0.0003 1.0276 27 1 -0.3633 0.8902 -0.5134 28 1 -0.3633 -0.8897 -0.5142 29 1 5.4259 1.0965 -2.2943 30 1 6.9017 1.7268 -1.7967 31 1 4.4588 -1.5950 0.0100 32 1 1.3302 -4.9754 0.8886 33 1 1.3310 -4.9749 -0.8914 34 1 1.7568 -7.4829 -0.0004 35 1 1.8179 -10.8200 0.0012 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322588840.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:25 Heat of formation + Delta-G solvation = -193.988855 kcal Electronic energy + Delta-G solvation = -25050.510398 eV Core-core repulsion = 20880.397413 eV Total energy + Delta-G solvation = -4170.112986 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.037 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.77333 -40.15228 -38.82681 -38.25272 -37.44953 -37.04083 -36.04904 -34.12111 -33.43428 -33.38161 -30.52909 -28.75319 -26.66855 -25.13272 -23.84472 -21.48892 -21.32677 -20.43423 -20.09434 -19.35098 -18.61380 -18.43243 -18.12735 -17.78320 -17.47528 -17.20973 -16.72435 -16.54176 -16.19174 -15.93236 -15.74937 -15.07526 -14.91968 -14.59966 -14.18744 -13.90222 -13.67490 -13.58379 -13.55255 -13.37415 -13.30565 -13.28948 -13.18842 -12.94395 -12.59741 -12.49747 -12.34001 -12.13348 -11.91213 -11.58377 -11.50946 -11.40947 -10.53389 -10.52056 -10.13097 -9.77729 -8.53485 -6.04138 -0.93899 -0.72566 0.04385 0.14556 0.32952 1.36826 1.37172 1.45369 1.56145 1.70460 1.86292 2.06777 2.29379 2.53505 3.02487 3.12111 3.36295 3.47986 3.71438 3.80444 4.00209 4.13625 4.20295 4.28114 4.34559 4.56297 4.57310 4.84165 5.00260 5.24035 5.31588 5.36165 5.87618 6.30420 6.42492 6.54159 7.01747 7.38332 7.92185 8.63302 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.015182 B = 0.002506 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.858456 B =11170.400643 C =12820.764349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.097 4.097 3 S 0.392 5.608 4 C -0.832 4.832 5 S 2.753 3.247 6 N -1.231 6.231 7 O -0.978 6.978 8 O -0.991 6.991 9 C 0.058 3.942 10 C -0.212 4.212 11 C 0.526 3.474 12 O -0.516 6.516 13 O -0.340 6.340 14 C 0.074 3.926 15 C 0.435 3.565 16 O -0.618 6.618 17 N -0.556 5.556 18 C -0.340 4.340 19 H 0.084 0.916 20 C -0.007 4.007 21 N -0.915 5.915 22 Si 0.997 3.003 23 H -0.271 1.271 24 H -0.269 1.269 25 H -0.269 1.269 26 H 0.103 0.897 27 H 0.111 0.889 28 H 0.093 0.907 29 H 0.431 0.569 30 H 0.433 0.567 31 H 0.163 0.837 32 H 0.108 0.892 33 H 0.111 0.889 34 H 0.400 0.600 35 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.307 25.969 -4.392 26.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.220 4.220 3 S 0.660 5.340 4 C -1.032 5.032 5 S 2.837 3.163 6 N -0.913 5.913 7 O -0.967 6.967 8 O -0.980 6.980 9 C 0.026 3.974 10 C -0.227 4.227 11 C 0.371 3.629 12 O -0.408 6.408 13 O -0.256 6.256 14 C -0.004 4.004 15 C 0.222 3.778 16 O -0.504 6.504 17 N -0.194 5.194 18 C -0.469 4.469 19 H 0.102 0.898 20 C -0.208 4.208 21 N -0.555 5.555 22 Si 0.820 3.180 23 H -0.196 1.196 24 H -0.193 1.193 25 H -0.194 1.194 26 H 0.121 0.879 27 H 0.129 0.871 28 H 0.111 0.889 29 H 0.261 0.739 30 H 0.267 0.733 31 H 0.181 0.819 32 H 0.126 0.874 33 H 0.129 0.871 34 H 0.235 0.765 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.841 27.663 -3.452 28.022 hybrid contribution -0.163 -3.184 -0.526 3.232 sum -3.004 24.478 -3.979 24.981 Atomic orbital electron populations 1.20995 0.84193 1.06182 1.05456 1.25602 1.04057 0.98024 0.94268 1.82764 0.87134 1.00292 1.63826 1.35276 1.27721 1.07920 1.32293 0.99999 0.71005 0.72537 0.72765 1.52605 1.30430 1.83066 1.25221 1.93593 1.86033 1.39301 1.77770 1.93618 1.64084 1.62271 1.78058 1.21192 0.95452 0.94968 0.85797 1.19352 0.93456 0.90208 1.19711 1.20665 0.84457 0.85278 0.72476 1.90777 1.15756 1.86712 1.47561 1.86614 1.40294 1.14954 1.83717 1.22560 0.93883 0.78262 1.05659 1.20110 0.89711 0.83799 0.84219 1.90541 1.21374 1.81798 1.56723 1.41715 1.09997 1.03678 1.63995 1.19690 0.89921 0.86451 1.50813 0.89820 1.26108 0.99571 0.99538 0.95585 1.69661 1.17253 1.19491 1.49065 0.84932 0.77408 0.76535 0.79147 1.19588 1.19287 1.19440 0.87922 0.87078 0.88884 0.73895 0.73326 0.81944 0.87364 0.87085 0.76500 0.90917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.52 9.61 71.24 0.68 -0.84 16 2 C -0.10 -1.74 6.35 25.19 0.16 -1.58 16 3 S 0.39 5.25 22.81 -56.49 -1.29 3.96 16 4 C -0.83 -15.52 6.48 66.65 0.43 -15.09 16 5 S 2.75 50.30 6.42 -56.49 -0.36 49.94 16 6 N -1.23 -11.51 9.55 37.02 0.35 -11.16 16 7 O -0.98 -21.28 17.88 -128.00 -2.29 -23.57 16 8 O -0.99 -27.35 17.77 -128.00 -2.27 -29.63 16 9 C 0.06 1.40 9.75 22.68 0.22 1.62 16 10 C -0.21 -5.31 5.98 -19.88 -0.12 -5.43 16 11 C 0.53 16.46 7.92 70.13 0.56 17.01 16 12 O -0.52 -16.31 13.85 19.64 0.27 -16.04 16 13 O -0.34 -12.74 9.48 -50.77 -0.48 -13.22 16 14 C 0.07 2.75 5.95 71.24 0.42 3.17 16 15 C 0.43 21.31 7.86 87.66 0.69 22.00 16 16 O -0.62 -35.45 16.08 15.72 0.25 -35.20 16 17 N -0.56 -28.52 5.29 -306.99 -1.62 -30.15 16 18 C -0.34 -19.13 9.68 84.04 0.81 -18.32 16 19 H 0.08 5.00 7.16 -2.91 -0.02 4.98 16 20 C -0.01 -0.38 5.50 84.93 0.47 0.09 16 21 N -0.91 -48.45 13.05 21.66 0.28 -48.17 16 22 Si 1.00 42.13 29.55 68.60 2.03 44.16 16 23 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 24 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 25 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 26 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.09 1.72 5.94 -2.39 -0.01 1.71 16 29 H 0.43 1.99 8.92 -96.74 -0.86 1.13 16 30 H 0.43 2.46 8.96 -96.75 -0.87 1.59 16 31 H 0.16 4.37 8.05 -2.91 -0.02 4.34 16 32 H 0.11 3.60 8.14 -2.38 -0.02 3.58 16 33 H 0.11 3.63 8.14 -2.39 -0.02 3.61 16 34 H 0.40 19.22 7.90 -92.71 -0.73 18.49 16 35 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 Total: -1.00 -80.91 345.90 -2.05 -82.96 By element: Atomic # 1 Polarization: 24.72 SS G_CDS: -1.25 Total: 23.47 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: 4.33 Total: 2.64 kcal Atomic # 7 Polarization: -88.49 SS G_CDS: -0.99 Total: -89.48 kcal Atomic # 8 Polarization: -113.13 SS G_CDS: -4.52 Total: -117.65 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Atomic # 16 Polarization: 55.55 SS G_CDS: -1.65 Total: 53.90 kcal Total: -80.91 -2.05 -82.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322588840.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.034 kcal (2) G-P(sol) polarization free energy of solvation -80.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds