Wall clock time and date at job start Wed Apr 1 2020 05:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34799 * 116.99903 * 2 1 4 4 O 1.21563 * 119.99860 * 359.97438 * 3 2 1 5 5 C 1.47111 * 120.00309 * 180.27135 * 3 2 1 6 6 N 1.33606 * 123.15120 * 359.74728 * 5 3 2 7 7 C 1.28621 * 115.76871 * 179.97438 * 6 5 3 8 8 S 1.70770 * 110.58116 * 0.02562 * 7 6 5 9 9 C 1.35288 * 123.15915 * 179.45543 * 5 3 2 10 10 S 1.76200 * 125.58964 * 359.96339 * 9 5 3 11 11 O 1.42104 * 106.40285 * 263.54336 * 10 9 5 12 12 O 1.42105 * 106.40158 * 36.46101 * 10 9 5 13 13 N 1.65600 * 107.22104 * 150.00014 * 10 9 5 14 14 C 1.34773 * 119.99505 * 65.00121 * 13 10 9 15 15 O 1.21281 * 120.00383 * 0.02562 * 14 13 10 16 16 C 1.50708 * 119.99698 * 180.02562 * 14 13 10 17 17 C 1.52995 * 109.47228 * 179.97438 * 16 14 13 18 18 C 1.50694 * 109.47309 * 179.97438 * 17 16 14 19 19 H 1.08003 * 120.00291 * 359.97438 * 18 17 16 20 20 C 1.37882 * 120.00011 * 180.02562 * 18 17 16 21 21 N 1.31509 * 120.00365 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99769 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47206 * 359.97438 * 22 20 18 24 24 H 1.48505 * 109.47253 * 120.00198 * 22 20 18 25 25 H 1.48501 * 109.46956 * 239.99831 * 22 20 18 26 26 H 1.09001 * 109.46882 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47630 * 300.00488 * 1 2 3 28 28 H 1.09004 * 109.46770 * 60.00892 * 1 2 3 29 29 H 1.07997 * 124.71032 * 179.97438 * 7 6 5 30 30 H 0.96995 * 120.00078 * 244.99964 * 13 10 9 31 31 H 1.08998 * 109.46923 * 299.99600 * 16 14 13 32 32 H 1.08998 * 109.47166 * 60.00043 * 16 14 13 33 33 H 1.08999 * 109.47267 * 300.00218 * 17 16 14 34 34 H 1.09004 * 109.47274 * 59.99452 * 17 16 14 35 35 H 0.96995 * 120.00581 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0640 1.2011 0.0000 4 8 1.4019 2.2206 -0.0005 5 6 3.5330 1.2782 -0.0060 6 7 4.3213 0.1994 -0.0067 7 6 5.5864 0.4313 -0.0128 8 16 5.8886 2.1120 -0.0177 9 6 4.2126 2.4479 -0.0172 10 16 3.4887 4.0543 -0.0272 11 8 3.4593 4.4728 -1.3849 12 8 2.3269 3.9760 0.7873 13 7 4.5387 5.0701 0.7526 14 6 5.7543 5.3166 0.2255 15 8 6.0791 4.7950 -0.8201 16 6 6.7102 6.2406 0.9354 17 6 8.0080 6.3469 0.1324 18 6 8.9635 7.2713 0.8419 19 1 8.6739 7.7368 1.7724 20 6 10.2072 7.5236 0.3026 21 7 10.5594 6.9580 -0.8312 22 14 11.3918 8.6689 1.1825 23 1 10.7600 9.1726 2.4285 24 1 12.6350 7.9304 1.5209 25 1 11.7221 9.8146 0.2974 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 6.3514 -0.3310 -0.0138 30 1 4.2788 5.4876 1.5886 31 1 6.2586 7.2282 1.0292 32 1 6.9285 5.8452 1.9274 33 1 8.4594 5.3592 0.0388 34 1 7.7900 6.7420 -0.8599 35 1 11.4341 7.1358 -1.2108 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324717640.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:09 Heat of formation + Delta-G solvation = -136.227861 kcal Electronic energy + Delta-G solvation = -26170.278532 eV Core-core repulsion = 22002.670251 eV Total energy + Delta-G solvation = -4167.608281 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.037 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.12870 -39.93987 -39.52176 -37.26200 -36.75842 -35.91819 -34.44590 -33.69685 -31.49349 -31.15805 -28.58531 -26.36371 -26.12080 -23.50073 -22.74672 -21.24446 -20.47767 -20.11348 -19.34638 -17.78286 -17.74648 -17.32291 -16.95466 -16.78009 -16.31386 -16.10866 -15.52953 -15.27838 -15.02364 -14.70307 -14.55797 -14.11407 -13.93974 -13.41194 -12.87119 -12.79788 -12.48069 -12.39176 -12.25482 -12.20170 -12.05520 -11.84522 -11.38857 -11.06886 -11.05804 -10.92816 -10.82827 -10.70430 -10.48639 -10.29536 -10.16856 -10.03584 -9.61178 -9.47870 -9.23533 -8.45212 -6.08890 -4.13918 -0.45844 -0.02171 0.73073 1.14852 1.32912 2.19855 2.28223 2.63023 2.71803 3.25292 3.33590 3.35785 3.43273 3.64509 4.27646 4.38204 4.49052 4.61385 4.77824 4.85188 4.94701 5.09815 5.17965 5.27069 5.30496 5.89620 5.92274 5.93730 6.45471 6.75777 6.77748 7.35448 7.56168 7.63777 7.66223 7.89758 8.24815 8.93279 9.50859 11.01834 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.024670 B = 0.002923 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.728944 B = 9578.146272 C =10295.390696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.333 6.333 3 C 0.519 3.481 4 O -0.453 6.453 5 C 0.151 3.849 6 N -0.434 5.434 7 C -0.003 4.003 8 S 0.408 5.592 9 C -0.816 4.816 10 S 2.702 3.298 11 O -0.911 6.911 12 O -0.901 6.901 13 N -1.061 6.061 14 C 0.521 3.479 15 O -0.481 6.481 16 C -0.131 4.131 17 C 0.031 3.969 18 C -0.530 4.530 19 H 0.058 0.942 20 C 0.060 3.940 21 N -0.888 5.888 22 Si 0.893 3.107 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.284 1.284 26 H 0.106 0.894 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.217 0.783 30 H 0.437 0.563 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.028 0.972 34 H 0.029 0.971 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.524 -13.601 5.468 20.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.249 6.249 3 C 0.358 3.642 4 O -0.338 6.338 5 C 0.006 3.994 6 N -0.149 5.149 7 C -0.299 4.299 8 S 0.670 5.330 9 C -1.021 5.021 10 S 2.784 3.216 11 O -0.901 6.901 12 O -0.891 6.891 13 N -0.830 5.830 14 C 0.310 3.690 15 O -0.352 6.352 16 C -0.173 4.173 17 C -0.006 4.006 18 C -0.568 4.568 19 H 0.077 0.923 20 C -0.143 4.143 21 N -0.526 5.526 22 Si 0.721 3.279 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.210 1.210 26 H 0.124 0.876 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.234 0.766 30 H 0.274 0.726 31 H 0.114 0.886 32 H 0.113 0.887 33 H 0.046 0.954 34 H 0.047 0.953 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.306 -13.538 4.178 20.135 hybrid contribution -0.031 0.088 0.959 0.964 sum -14.337 -13.450 5.137 20.318 Atomic orbital electron populations 1.23430 0.75388 1.04130 1.03170 1.86645 1.23712 1.30849 1.83665 1.19999 0.86774 0.82770 0.74687 1.91152 1.65165 1.34577 1.42866 1.18788 0.92607 0.86291 1.01753 1.67180 1.03059 1.30556 1.14069 1.29183 0.96790 1.03166 1.00777 1.83779 0.94925 0.99550 1.54736 1.36749 1.12371 1.27895 1.25097 1.02546 0.72295 0.71820 0.74955 1.93673 1.84567 1.78698 1.33173 1.93721 1.40842 1.85174 1.69374 1.55424 1.29928 1.58722 1.38932 1.22014 0.80587 0.81514 0.84845 1.90845 1.74707 1.48775 1.20836 1.22114 0.96904 0.97319 1.00959 1.19022 0.88028 0.98283 0.95300 1.21183 0.99534 1.28034 1.08054 0.92335 1.25011 0.98243 0.96081 0.94932 1.69981 1.20912 1.43226 1.18476 0.86524 0.80981 0.80692 0.79679 1.19711 1.20996 1.20977 0.87577 0.91255 0.91414 0.76635 0.72553 0.88637 0.88685 0.95380 0.95255 0.92849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.57 101.05 1.07 1.34 16 2 O -0.33 -4.21 10.50 -40.76 -0.43 -4.64 16 3 C 0.52 7.78 7.91 34.33 0.27 8.05 16 4 O -0.45 -7.60 12.18 -27.67 -0.34 -7.93 16 5 C 0.15 2.22 6.71 -84.55 -0.57 1.65 16 6 N -0.43 -5.69 10.60 -12.39 -0.13 -5.82 16 7 C 0.00 -0.03 12.17 51.42 0.63 0.60 16 8 S 0.41 4.99 19.90 -107.50 -2.14 2.85 16 9 C -0.82 -11.97 6.32 29.68 0.19 -11.78 16 10 S 2.70 42.27 4.82 -107.50 -0.52 41.75 16 11 O -0.91 -17.61 16.97 -64.61 -1.10 -18.70 16 12 O -0.90 -14.72 14.41 -67.39 -0.97 -15.69 16 13 N -1.06 -13.55 5.70 31.22 0.18 -13.37 16 14 C 0.52 8.40 6.99 -10.98 -0.08 8.32 16 15 O -0.48 -9.28 12.80 -11.51 -0.15 -9.43 16 16 C -0.13 -2.20 5.64 -27.88 -0.16 -2.36 16 17 C 0.03 0.74 4.26 -27.89 -0.12 0.62 16 18 C -0.53 -13.65 9.11 -34.44 -0.31 -13.96 16 19 H 0.06 1.42 7.74 -52.48 -0.41 1.01 16 20 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 21 N -0.89 -25.51 13.29 55.43 0.74 -24.77 16 22 Si 0.89 20.38 29.54 -169.99 -5.02 15.35 16 23 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.22 1.18 8.06 -52.49 -0.42 0.76 16 30 H 0.44 3.66 8.83 -34.47 -0.30 3.36 16 31 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 32 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.03 0.70 8.10 -51.93 -0.42 0.28 16 34 H 0.03 0.77 8.10 -51.93 -0.42 0.35 16 35 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 337.00 15.07 5.08 5.08 Total: -1.00 -37.03 337.00 -7.20 -44.23 By element: Atomic # 1 Polarization: 0.32 SS G_CDS: -3.22 Total: -2.91 kcal Atomic # 6 Polarization: -6.82 SS G_CDS: 0.82 Total: -6.00 kcal Atomic # 7 Polarization: -44.75 SS G_CDS: 0.78 Total: -43.96 kcal Atomic # 8 Polarization: -53.41 SS G_CDS: -2.98 Total: -56.39 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.35 kcal Atomic # 16 Polarization: 47.26 SS G_CDS: -2.66 Total: 44.60 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -37.03 -7.20 -44.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324717640.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.999 kcal (2) G-P(sol) polarization free energy of solvation -37.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds