Wall clock time and date at job start Wed Apr 1 2020 05:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34799 * 116.99903 * 2 1 4 4 O 1.21563 * 119.99860 * 359.97438 * 3 2 1 5 5 C 1.47111 * 120.00309 * 180.27135 * 3 2 1 6 6 N 1.33606 * 123.15120 * 359.74728 * 5 3 2 7 7 C 1.28621 * 115.76871 * 179.97438 * 6 5 3 8 8 S 1.70770 * 110.58116 * 0.02562 * 7 6 5 9 9 C 1.35288 * 123.15915 * 179.45543 * 5 3 2 10 10 S 1.76200 * 125.58964 * 359.96339 * 9 5 3 11 11 O 1.42104 * 106.40285 * 263.54336 * 10 9 5 12 12 O 1.42105 * 106.40158 * 36.46101 * 10 9 5 13 13 N 1.65600 * 107.22104 * 150.00014 * 10 9 5 14 14 C 1.34773 * 119.99505 * 65.00121 * 13 10 9 15 15 O 1.21281 * 120.00383 * 0.02562 * 14 13 10 16 16 C 1.50708 * 119.99698 * 180.02562 * 14 13 10 17 17 C 1.52995 * 109.47228 * 179.97438 * 16 14 13 18 18 C 1.50694 * 109.47309 * 179.97438 * 17 16 14 19 19 H 1.08003 * 120.00291 * 359.97438 * 18 17 16 20 20 C 1.37882 * 120.00011 * 180.02562 * 18 17 16 21 21 N 1.31509 * 120.00365 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99769 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47206 * 359.97438 * 22 20 18 24 24 H 1.48505 * 109.47253 * 120.00198 * 22 20 18 25 25 H 1.48501 * 109.46956 * 239.99831 * 22 20 18 26 26 H 1.09001 * 109.46882 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47630 * 300.00488 * 1 2 3 28 28 H 1.09004 * 109.46770 * 60.00892 * 1 2 3 29 29 H 1.07997 * 124.71032 * 179.97438 * 7 6 5 30 30 H 0.96995 * 120.00078 * 244.99964 * 13 10 9 31 31 H 1.08998 * 109.46923 * 299.99600 * 16 14 13 32 32 H 1.08998 * 109.47166 * 60.00043 * 16 14 13 33 33 H 1.08999 * 109.47267 * 300.00218 * 17 16 14 34 34 H 1.09004 * 109.47274 * 59.99452 * 17 16 14 35 35 H 0.96995 * 120.00581 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0640 1.2011 0.0000 4 8 1.4019 2.2206 -0.0005 5 6 3.5330 1.2782 -0.0060 6 7 4.3213 0.1994 -0.0067 7 6 5.5864 0.4313 -0.0128 8 16 5.8886 2.1120 -0.0177 9 6 4.2126 2.4479 -0.0172 10 16 3.4887 4.0543 -0.0272 11 8 3.4593 4.4728 -1.3849 12 8 2.3269 3.9760 0.7873 13 7 4.5387 5.0701 0.7526 14 6 5.7543 5.3166 0.2255 15 8 6.0791 4.7950 -0.8201 16 6 6.7102 6.2406 0.9354 17 6 8.0080 6.3469 0.1324 18 6 8.9635 7.2713 0.8419 19 1 8.6739 7.7368 1.7724 20 6 10.2072 7.5236 0.3026 21 7 10.5594 6.9580 -0.8312 22 14 11.3918 8.6689 1.1825 23 1 10.7600 9.1726 2.4285 24 1 12.6350 7.9304 1.5209 25 1 11.7221 9.8146 0.2974 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 6.3514 -0.3310 -0.0138 30 1 4.2788 5.4876 1.5886 31 1 6.2586 7.2282 1.0292 32 1 6.9285 5.8452 1.9274 33 1 8.4594 5.3592 0.0388 34 1 7.7900 6.7420 -0.8599 35 1 11.4341 7.1358 -1.2108 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324717640.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:09 Heat of formation + Delta-G solvation = -165.610564 kcal Electronic energy + Delta-G solvation = -26171.552661 eV Core-core repulsion = 22002.670251 eV Total energy + Delta-G solvation = -4168.882411 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.037 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.17565 -41.27522 -40.52311 -38.54762 -37.84291 -37.21794 -35.71361 -35.56802 -32.94838 -32.50420 -29.44649 -27.94618 -27.22694 -24.50293 -24.37927 -22.35574 -21.96363 -21.14080 -20.55002 -19.13471 -18.89150 -18.63587 -18.01993 -17.90310 -17.74948 -17.34149 -16.81951 -16.52885 -16.42307 -15.94300 -15.76215 -15.50881 -14.90817 -14.42489 -14.39425 -14.29367 -13.89713 -13.59683 -13.46161 -13.35688 -13.23221 -13.13128 -13.01370 -12.83904 -12.42611 -12.15658 -12.02212 -11.90298 -11.87782 -11.70597 -11.52387 -11.35973 -11.16156 -11.02677 -10.49872 -10.46701 -8.12373 -6.23663 -1.50503 -1.22452 -0.27378 0.21593 0.34484 0.93022 1.28723 1.47365 1.48117 1.50587 1.60118 1.60899 2.23873 2.47136 2.73255 3.08791 3.22645 3.50626 3.52698 3.68284 3.94066 4.22056 4.28845 4.39794 4.48330 4.58358 4.65456 4.95565 5.08118 5.59023 5.61522 5.71728 5.81371 5.92720 6.21189 6.30941 6.41810 6.96122 7.46080 8.99728 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.024670 B = 0.002923 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.728944 B = 9578.146272 C =10295.390696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.336 6.336 3 C 0.514 3.486 4 O -0.480 6.480 5 C 0.143 3.857 6 N -0.450 5.450 7 C 0.028 3.972 8 S 0.403 5.597 9 C -0.837 4.837 10 S 2.717 3.283 11 O -0.956 6.956 12 O -0.911 6.911 13 N -1.038 6.038 14 C 0.530 3.470 15 O -0.516 6.516 16 C -0.122 4.122 17 C 0.032 3.968 18 C -0.536 4.536 19 H 0.078 0.922 20 C -0.002 4.002 21 N -0.934 5.934 22 Si 0.963 3.037 23 H -0.254 1.254 24 H -0.283 1.283 25 H -0.288 1.288 26 H 0.143 0.857 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.266 0.734 30 H 0.458 0.542 31 H 0.120 0.880 32 H 0.132 0.868 33 H 0.004 0.996 34 H -0.011 1.011 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.441 -14.268 7.637 21.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.251 6.251 3 C 0.354 3.646 4 O -0.367 6.367 5 C -0.003 4.003 6 N -0.164 5.164 7 C -0.268 4.268 8 S 0.665 5.335 9 C -1.044 5.044 10 S 2.801 3.199 11 O -0.946 6.946 12 O -0.901 6.901 13 N -0.810 5.810 14 C 0.320 3.680 15 O -0.389 6.389 16 C -0.163 4.163 17 C -0.006 4.006 18 C -0.574 4.574 19 H 0.096 0.904 20 C -0.200 4.200 21 N -0.574 5.574 22 Si 0.789 3.211 23 H -0.177 1.177 24 H -0.209 1.209 25 H -0.214 1.214 26 H 0.161 0.839 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.282 0.718 30 H 0.300 0.700 31 H 0.138 0.862 32 H 0.150 0.850 33 H 0.023 0.977 34 H 0.007 0.993 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -14.269 -14.181 6.401 21.111 hybrid contribution -0.083 0.159 0.284 0.336 sum -14.351 -14.023 6.685 21.149 Atomic orbital electron populations 1.23827 0.73196 1.06635 1.03386 1.86639 1.25901 1.29606 1.82954 1.20207 0.87112 0.83078 0.74155 1.91127 1.65775 1.35470 1.44358 1.18964 0.92880 0.86770 1.01694 1.67229 1.03973 1.29860 1.15364 1.29954 0.96683 1.02944 0.97202 1.83842 0.93486 1.01303 1.54823 1.36491 1.13698 1.27148 1.27097 1.01736 0.72192 0.72021 0.73980 1.93623 1.85428 1.79911 1.35615 1.93702 1.41672 1.85510 1.69219 1.54977 1.28259 1.58235 1.39553 1.21837 0.81082 0.80926 0.84202 1.90847 1.75553 1.50078 1.22416 1.21943 0.93913 0.99142 1.01299 1.18841 0.91075 0.96313 0.94331 1.21718 0.99695 1.27573 1.08458 0.90431 1.25973 1.00536 0.97866 0.95654 1.70137 1.21461 1.45323 1.20478 0.85425 0.78572 0.78229 0.78918 1.17737 1.20862 1.21388 0.83924 0.91004 0.91318 0.71807 0.70025 0.86239 0.84976 0.97720 0.99281 0.93013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 10.57 113.37 1.20 1.54 16 2 O -0.34 -8.22 10.50 -57.11 -0.60 -8.82 16 3 C 0.51 15.40 7.91 70.15 0.55 15.96 16 4 O -0.48 -16.34 12.18 27.62 0.34 -16.00 16 5 C 0.14 4.14 6.71 40.52 0.27 4.41 16 6 N -0.45 -11.03 10.60 -193.10 -2.05 -13.08 16 7 C 0.03 0.49 12.17 130.71 1.59 2.08 16 8 S 0.40 9.46 19.90 -56.49 -1.12 8.34 16 9 C -0.84 -24.34 6.32 67.14 0.42 -23.92 16 10 S 2.72 85.47 4.82 -56.49 -0.27 85.20 16 11 O -0.96 -38.09 16.97 -120.89 -2.05 -40.14 16 12 O -0.91 -29.83 14.41 -118.23 -1.70 -31.53 16 13 N -1.04 -25.44 5.70 -173.53 -0.99 -26.43 16 14 C 0.53 16.70 6.99 87.66 0.61 17.31 16 15 O -0.52 -20.26 12.80 13.29 0.17 -20.09 16 16 C -0.12 -3.85 5.64 29.85 0.17 -3.69 16 17 C 0.03 1.53 4.26 29.84 0.13 1.66 16 18 C -0.54 -27.16 9.11 25.60 0.23 -26.93 16 19 H 0.08 3.55 7.74 -2.91 -0.02 3.53 16 20 C 0.00 -0.13 5.46 84.66 0.46 0.33 16 21 N -0.93 -54.81 13.29 21.45 0.28 -54.53 16 22 Si 0.96 41.35 29.54 68.60 2.03 43.37 16 23 H -0.25 -10.03 7.11 99.48 0.71 -9.32 16 24 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 25 H -0.29 -12.43 7.11 99.48 0.71 -11.72 16 26 H 0.14 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 29 H 0.27 1.77 8.06 -2.91 -0.02 1.74 16 30 H 0.46 6.73 8.83 -96.75 -0.85 5.87 16 31 H 0.12 3.26 8.14 -2.39 -0.02 3.24 16 32 H 0.13 3.24 8.14 -2.39 -0.02 3.22 16 33 H 0.00 0.22 8.10 -2.39 -0.02 0.21 16 34 H -0.01 -0.62 8.10 -2.39 -0.02 -0.64 16 35 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 Total: -1.00 -83.11 337.00 -0.01 -83.12 By element: Atomic # 1 Polarization: 1.52 SS G_CDS: 0.31 Total: 1.83 kcal Atomic # 6 Polarization: -16.89 SS G_CDS: 5.64 Total: -11.24 kcal Atomic # 7 Polarization: -91.28 SS G_CDS: -2.75 Total: -94.03 kcal Atomic # 8 Polarization: -112.73 SS G_CDS: -3.85 Total: -116.58 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 2.03 Total: 43.37 kcal Atomic # 16 Polarization: 94.93 SS G_CDS: -1.40 Total: 93.53 kcal Total: -83.11 -0.01 -83.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324717640.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.493 kcal (2) G-P(sol) polarization free energy of solvation -83.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds