Wall clock time and date at job start Wed Apr 1 2020 05:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86808 * 119.99846 * 2 1 4 4 H 1.48495 * 109.47175 * 270.00126 * 3 2 1 5 5 H 1.48499 * 109.46960 * 30.00365 * 3 2 1 6 6 H 1.48508 * 109.46748 * 150.00069 * 3 2 1 7 7 C 1.38798 * 120.00173 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00227 * 359.97438 * 7 2 1 9 9 S 1.76203 * 120.00033 * 179.97438 * 7 2 1 10 10 C 1.80997 * 99.99806 * 179.97438 * 9 7 2 11 11 C 1.53007 * 109.47140 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47002 * 180.02562 * 11 10 9 13 13 O 1.45205 * 109.46841 * 179.97438 * 12 11 10 14 14 C 1.34709 * 117.00180 * 179.97438 * 13 12 11 15 15 O 1.21470 * 119.99931 * 359.97438 * 14 13 12 16 16 C 1.47717 * 120.00323 * 179.97438 * 14 13 12 17 17 C 1.39648 * 120.14876 * 0.02562 * 16 14 13 18 18 C 1.37929 * 119.84941 * 179.97438 * 17 16 14 19 19 C 1.38386 * 120.14825 * 0.27872 * 18 17 16 20 20 C 1.38345 * 120.30474 * 359.44560 * 19 18 17 21 21 S 1.76201 * 119.92953 * 180.30076 * 20 19 18 22 22 O 1.42104 * 106.40002 * 270.25364 * 21 20 19 23 23 O 1.42107 * 106.39901 * 43.16962 * 21 20 19 24 24 F 1.61001 * 107.21970 * 156.70931 * 21 20 19 25 25 C 1.37975 * 120.14878 * 0.55131 * 20 19 18 26 26 H 0.97002 * 119.99828 * 359.97438 * 1 2 3 27 27 H 1.08992 * 109.47690 * 60.00207 * 10 9 7 28 28 H 1.09003 * 109.47199 * 300.00022 * 10 9 7 29 29 H 1.08992 * 109.47376 * 59.99687 * 11 10 9 30 30 H 1.09003 * 109.46837 * 299.99931 * 11 10 9 31 31 H 1.09000 * 109.47301 * 59.99835 * 12 11 10 32 32 H 1.08997 * 109.46896 * 299.99187 * 12 11 10 33 33 H 1.07999 * 120.07600 * 359.97438 * 17 16 14 34 34 H 1.08002 * 119.92294 * 179.97438 * 18 17 16 35 35 H 1.08000 * 119.84887 * 179.71713 * 19 18 17 36 36 H 1.07997 * 120.07576 * 179.75004 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4478 2.6527 0.7001 6 1 3.5479 1.4402 0.7001 7 6 2.0104 -1.2020 -0.0005 8 1 1.4704 -2.1373 -0.0005 9 16 3.7724 -1.2020 -0.0012 10 6 4.0867 -2.9844 -0.0009 11 6 5.5959 -3.2362 -0.0008 12 6 5.8615 -4.7430 -0.0012 13 8 7.2938 -4.9819 -0.0017 14 6 7.6995 -6.2664 -0.0016 15 8 6.8794 -7.1624 -0.0006 16 6 9.1419 -6.5854 -0.0027 17 6 10.0875 -5.5578 -0.0033 18 6 11.4326 -5.8627 -0.0037 19 6 11.8459 -7.1834 -0.0094 20 6 10.9146 -8.2064 -0.0031 21 16 11.4519 -9.8845 -0.0024 22 8 11.5736 -10.2673 -1.3655 23 8 12.5255 -9.9616 0.9254 24 9 10.2548 -10.7680 0.6129 25 6 9.5658 -7.9156 -0.0026 26 1 -0.4850 0.8401 0.0004 27 1 3.6435 -3.4317 -0.8906 28 1 3.6441 -3.4313 0.8893 29 1 6.0388 -2.7891 0.8890 30 1 6.0388 -2.7893 -0.8909 31 1 5.4187 -5.1898 -0.8914 32 1 5.4186 -5.1902 0.8886 33 1 9.7662 -4.5267 -0.0034 34 1 12.1650 -5.0689 -0.0046 35 1 12.9005 -7.4166 -0.0144 36 1 8.8398 -8.7151 -0.0017 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332329547.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:06 Heat of formation + Delta-G solvation = -196.744123 kcal Electronic energy + Delta-G solvation = -23984.599939 eV Core-core repulsion = 19794.447515 eV Total energy + Delta-G solvation = -4190.152425 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.038 amu Computer time = 2.13 seconds Orbital eigenvalues (eV) -48.82641 -41.05340 -39.51734 -38.23672 -36.99192 -36.94060 -33.83493 -32.51091 -32.43375 -32.11834 -27.11467 -25.74342 -24.89568 -24.12901 -21.98570 -21.56883 -20.83444 -19.46528 -18.26733 -17.77326 -17.45438 -17.34321 -17.14464 -16.88596 -16.69568 -15.76509 -15.34549 -15.06494 -15.01759 -14.88533 -14.70790 -14.51140 -13.83318 -13.56501 -13.47691 -13.28192 -13.13097 -13.00951 -12.94559 -12.90611 -12.65620 -12.48798 -11.73402 -11.63898 -11.36688 -11.18234 -11.06397 -11.02383 -10.52921 -10.35820 -10.31927 -9.94705 -9.88606 -9.07839 -8.68700 -7.04841 -6.35019 -4.09148 -0.85531 -0.22440 0.10807 1.87105 2.04224 2.23245 2.45811 2.83230 2.92764 3.24424 3.38568 3.47776 3.62711 3.89357 3.91293 4.17207 4.24543 4.27550 4.39529 4.65557 4.74158 4.89707 4.90109 4.97508 5.01731 5.03744 5.24903 5.34765 5.39278 5.56208 5.61158 5.83497 5.89803 6.14450 6.22148 6.44501 7.32584 7.88450 8.37729 9.10068 10.74297 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.034659 B = 0.001617 C = 0.001561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.687282 B =17316.875136 C =17931.146127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.092 3.908 3 Si 0.862 3.138 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.238 1.238 7 C -0.506 4.506 8 H 0.089 0.911 9 S -0.205 6.205 10 C -0.085 4.085 11 C -0.101 4.101 12 C 0.073 3.927 13 O -0.349 6.349 14 C 0.507 3.493 15 O -0.499 6.499 16 C -0.131 4.131 17 C -0.002 4.002 18 C -0.140 4.140 19 C 0.019 3.981 20 C -0.695 4.695 21 S 2.676 3.324 22 O -0.918 6.918 23 O -0.921 6.921 24 F -0.465 7.465 25 C 0.025 3.975 26 H 0.271 0.729 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.156 0.844 34 H 0.151 0.849 35 H 0.149 0.851 36 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.501 -16.909 0.656 32.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.116 4.116 3 Si 0.687 3.313 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.162 1.162 7 C -0.653 4.653 8 H 0.107 0.893 9 S 0.022 5.978 10 C -0.234 4.234 11 C -0.140 4.140 12 C -0.002 4.002 13 O -0.266 6.266 14 C 0.351 3.649 15 O -0.387 6.387 16 C -0.133 4.133 17 C -0.020 4.020 18 C -0.159 4.159 19 C -0.001 4.001 20 C -0.781 4.781 21 S 2.763 3.237 22 O -0.916 6.916 23 O -0.920 6.920 24 F -0.465 7.465 25 C 0.005 3.995 26 H 0.081 0.919 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.173 0.827 34 H 0.168 0.832 35 H 0.167 0.833 36 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 27.955 -16.830 0.657 32.637 hybrid contribution -1.336 0.487 -0.009 1.422 sum 26.620 -16.344 0.648 31.243 Atomic orbital electron populations 1.69936 1.05912 1.27806 1.47907 1.24798 0.94530 0.99039 0.93273 0.86670 0.81703 0.83212 0.79745 1.19309 1.20004 1.16183 1.22111 0.86879 0.97534 1.58812 0.89274 1.84159 1.11942 1.04085 1.97568 1.22947 0.95797 1.00281 1.04329 1.21344 0.96146 0.91977 1.04484 1.23342 0.75300 0.98294 1.03217 1.86481 1.29515 1.27100 1.83470 1.20870 0.88990 0.81655 0.73411 1.90878 1.54867 1.47782 1.45223 1.19226 0.90716 0.94213 1.09129 1.22000 0.92563 1.00361 0.87088 1.21397 0.96212 0.96714 1.01594 1.21038 0.99166 0.92098 0.87756 1.30521 1.01871 1.23810 1.21931 1.03987 0.71562 0.73472 0.74663 1.93809 1.83773 1.81323 1.32717 1.93783 1.48649 1.85921 1.63638 1.93670 1.77614 1.83533 1.91677 1.21001 0.93473 0.97185 0.87792 0.91877 0.90938 0.90904 0.90153 0.90167 0.90617 0.90618 0.82674 0.83175 0.83299 0.82849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 55. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.21 13.97 55.49 0.78 -25.43 16 2 C 0.09 2.64 5.50 -17.43 -0.10 2.54 16 3 Si 0.86 20.95 27.74 -169.99 -4.71 16.24 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.24 -5.62 6.74 56.52 0.38 -5.24 16 7 C -0.51 -14.30 10.04 30.94 0.31 -13.99 16 8 H 0.09 2.68 8.03 -52.49 -0.42 2.26 16 9 S -0.21 -4.78 19.41 -107.50 -2.09 -6.87 16 10 C -0.09 -1.53 5.67 37.16 0.21 -1.32 16 11 C -0.10 -1.40 5.60 -26.73 -0.15 -1.55 16 12 C 0.07 0.90 5.48 37.16 0.20 1.11 16 13 O -0.35 -3.99 9.47 -40.51 -0.38 -4.37 16 14 C 0.51 5.73 7.90 34.60 0.27 6.00 16 15 O -0.50 -6.88 16.14 -19.24 -0.31 -7.19 16 16 C -0.13 -1.11 5.87 -104.99 -0.62 -1.73 16 17 C 0.00 -0.01 9.62 -39.17 -0.38 -0.39 16 18 C -0.14 -0.61 10.03 -39.64 -0.40 -1.00 16 19 C 0.02 0.09 9.59 -39.49 -0.38 -0.29 16 20 C -0.70 -4.10 5.86 -39.64 -0.23 -4.34 16 21 S 2.68 15.29 6.69 -107.50 -0.72 14.57 16 22 O -0.92 -7.73 18.04 -57.17 -1.03 -8.76 16 23 O -0.92 -7.04 17.88 -57.17 -1.02 -8.06 16 24 F -0.47 -2.74 17.41 2.25 0.04 -2.70 16 25 C 0.02 0.18 9.16 -39.17 -0.36 -0.18 16 26 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 27 H 0.07 1.30 8.14 -51.92 -0.42 0.88 16 28 H 0.07 1.31 8.14 -51.91 -0.42 0.89 16 29 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.16 0.76 7.61 -52.49 -0.40 0.36 16 34 H 0.15 0.22 8.06 -52.49 -0.42 -0.20 16 35 H 0.15 0.28 8.06 -52.49 -0.42 -0.14 16 36 H 0.15 0.97 7.34 -52.49 -0.39 0.59 16 LS Contribution 354.25 15.07 5.34 5.34 Total: -1.00 -36.15 354.25 -9.47 -45.61 By element: Atomic # 1 Polarization: 0.50 SS G_CDS: -3.74 Total: -3.25 kcal Atomic # 6 Polarization: -13.53 SS G_CDS: -1.61 Total: -15.14 kcal Atomic # 7 Polarization: -26.21 SS G_CDS: 0.78 Total: -25.43 kcal Atomic # 8 Polarization: -25.63 SS G_CDS: -2.75 Total: -28.38 kcal Atomic # 9 Polarization: -2.74 SS G_CDS: 0.04 Total: -2.70 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.71 Total: 16.24 kcal Atomic # 16 Polarization: 10.51 SS G_CDS: -2.81 Total: 7.71 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -36.15 -9.47 -45.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332329547.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.131 kcal (2) G-P(sol) polarization free energy of solvation -36.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.13 seconds