Wall clock time and date at job start Wed Apr 1 2020 05:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86808 * 119.99846 * 2 1 4 4 H 1.48495 * 109.47175 * 270.00126 * 3 2 1 5 5 H 1.48499 * 109.46960 * 30.00365 * 3 2 1 6 6 H 1.48508 * 109.46748 * 150.00069 * 3 2 1 7 7 C 1.38798 * 120.00173 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00227 * 359.97438 * 7 2 1 9 9 S 1.76203 * 120.00033 * 179.97438 * 7 2 1 10 10 C 1.80997 * 99.99806 * 179.97438 * 9 7 2 11 11 C 1.53007 * 109.47140 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47002 * 180.02562 * 11 10 9 13 13 O 1.45205 * 109.46841 * 179.97438 * 12 11 10 14 14 C 1.34709 * 117.00180 * 179.97438 * 13 12 11 15 15 O 1.21470 * 119.99931 * 359.97438 * 14 13 12 16 16 C 1.47717 * 120.00323 * 179.97438 * 14 13 12 17 17 C 1.39648 * 120.14876 * 0.02562 * 16 14 13 18 18 C 1.37929 * 119.84941 * 179.97438 * 17 16 14 19 19 C 1.38386 * 120.14825 * 0.27872 * 18 17 16 20 20 C 1.38345 * 120.30474 * 359.44560 * 19 18 17 21 21 S 1.76201 * 119.92953 * 180.30076 * 20 19 18 22 22 O 1.42104 * 106.40002 * 270.25364 * 21 20 19 23 23 O 1.42107 * 106.39901 * 43.16962 * 21 20 19 24 24 F 1.61001 * 107.21970 * 156.70931 * 21 20 19 25 25 C 1.37975 * 120.14878 * 0.55131 * 20 19 18 26 26 H 0.97002 * 119.99828 * 359.97438 * 1 2 3 27 27 H 1.08992 * 109.47690 * 60.00207 * 10 9 7 28 28 H 1.09003 * 109.47199 * 300.00022 * 10 9 7 29 29 H 1.08992 * 109.47376 * 59.99687 * 11 10 9 30 30 H 1.09003 * 109.46837 * 299.99931 * 11 10 9 31 31 H 1.09000 * 109.47301 * 59.99835 * 12 11 10 32 32 H 1.08997 * 109.46896 * 299.99187 * 12 11 10 33 33 H 1.07999 * 120.07600 * 359.97438 * 17 16 14 34 34 H 1.08002 * 119.92294 * 179.97438 * 18 17 16 35 35 H 1.08000 * 119.84887 * 179.71713 * 19 18 17 36 36 H 1.07997 * 120.07576 * 179.75004 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4478 2.6527 0.7001 6 1 3.5479 1.4402 0.7001 7 6 2.0104 -1.2020 -0.0005 8 1 1.4704 -2.1373 -0.0005 9 16 3.7724 -1.2020 -0.0012 10 6 4.0867 -2.9844 -0.0009 11 6 5.5959 -3.2362 -0.0008 12 6 5.8615 -4.7430 -0.0012 13 8 7.2938 -4.9819 -0.0017 14 6 7.6995 -6.2664 -0.0016 15 8 6.8794 -7.1624 -0.0006 16 6 9.1419 -6.5854 -0.0027 17 6 10.0875 -5.5578 -0.0033 18 6 11.4326 -5.8627 -0.0037 19 6 11.8459 -7.1834 -0.0094 20 6 10.9146 -8.2064 -0.0031 21 16 11.4519 -9.8845 -0.0024 22 8 11.5736 -10.2673 -1.3655 23 8 12.5255 -9.9616 0.9254 24 9 10.2548 -10.7680 0.6129 25 6 9.5658 -7.9156 -0.0026 26 1 -0.4850 0.8401 0.0004 27 1 3.6435 -3.4317 -0.8906 28 1 3.6441 -3.4313 0.8893 29 1 6.0388 -2.7891 0.8890 30 1 6.0388 -2.7893 -0.8909 31 1 5.4187 -5.1898 -0.8914 32 1 5.4186 -5.1902 0.8886 33 1 9.7662 -4.5267 -0.0034 34 1 12.1650 -5.0689 -0.0046 35 1 12.9005 -7.4166 -0.0144 36 1 8.8398 -8.7151 -0.0017 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332329547.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:05 Heat of formation + Delta-G solvation = -221.171419 kcal Electronic energy + Delta-G solvation = -23985.659186 eV Core-core repulsion = 19794.447515 eV Total energy + Delta-G solvation = -4191.211672 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.038 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.33770 -41.84430 -40.09552 -38.80687 -37.92010 -37.54178 -35.01288 -34.69119 -32.97869 -32.57360 -28.36141 -27.77386 -25.61115 -24.63590 -22.86330 -22.52546 -21.40479 -20.12364 -19.58088 -18.80099 -18.49231 -17.91754 -17.83389 -17.65346 -17.34069 -17.10928 -16.35245 -16.11034 -16.10655 -15.76932 -15.45321 -15.06157 -14.95603 -14.62688 -14.52541 -14.07995 -14.04835 -13.99882 -13.75976 -13.67194 -13.59503 -13.39375 -13.05623 -13.03810 -12.64779 -12.46414 -12.30251 -12.18862 -11.87568 -11.67605 -11.58614 -11.17239 -10.78989 -10.61692 -10.40775 -9.01230 -8.52676 -6.25013 -1.34654 -0.71579 -0.38674 1.02246 1.19540 1.31719 1.33040 1.48255 1.67351 1.79761 1.97320 2.24084 2.29590 2.64694 2.85414 3.13522 3.27938 3.47863 3.71104 3.80242 3.81156 3.90930 3.99840 4.06075 4.18942 4.26468 4.46811 4.48689 4.62855 4.66537 4.93595 4.97295 4.98269 5.05523 5.27771 5.46560 5.68465 6.09650 6.44956 6.90762 8.60295 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.034659 B = 0.001617 C = 0.001561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.687282 B =17316.875136 C =17931.146127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.036 3.964 3 Si 0.927 3.073 4 H -0.261 1.261 5 H -0.264 1.264 6 H -0.225 1.225 7 C -0.527 4.527 8 H 0.050 0.950 9 S -0.203 6.203 10 C -0.076 4.076 11 C -0.087 4.087 12 C 0.078 3.922 13 O -0.344 6.344 14 C 0.508 3.492 15 O -0.533 6.533 16 C -0.155 4.155 17 C -0.002 4.002 18 C -0.132 4.132 19 C 0.019 3.981 20 C -0.695 4.695 21 S 2.708 3.292 22 O -0.944 6.944 23 O -0.937 6.937 24 F -0.465 7.465 25 C 0.012 3.988 26 H 0.277 0.723 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.168 0.832 34 H 0.187 0.813 35 H 0.180 0.820 36 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.835 -15.947 0.790 34.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.169 4.169 3 Si 0.748 3.252 4 H -0.185 1.185 5 H -0.189 1.189 6 H -0.148 1.148 7 C -0.675 4.675 8 H 0.069 0.931 9 S 0.025 5.975 10 C -0.224 4.224 11 C -0.125 4.125 12 C 0.003 3.997 13 O -0.260 6.260 14 C 0.354 3.646 15 O -0.424 6.424 16 C -0.157 4.157 17 C -0.020 4.020 18 C -0.150 4.150 19 C 0.000 4.000 20 C -0.783 4.783 21 S 2.797 3.203 22 O -0.943 6.943 23 O -0.936 6.936 24 F -0.465 7.465 25 C -0.007 4.007 26 H 0.086 0.914 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.185 0.815 34 H 0.204 0.796 35 H 0.198 0.802 36 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 31.307 -15.886 0.793 35.116 hybrid contribution -2.333 0.050 -0.042 2.334 sum 28.974 -15.836 0.751 33.028 Atomic orbital electron populations 1.70045 1.07754 1.29168 1.49032 1.25824 0.95446 1.02934 0.92681 0.85693 0.80821 0.78412 0.80281 1.18529 1.18893 1.14845 1.22363 0.90216 0.96298 1.58577 0.93139 1.83766 1.07340 1.08840 1.97594 1.22982 0.99004 0.96212 1.04238 1.21150 0.92808 0.93206 1.05353 1.23110 0.76216 0.97036 1.03323 1.86460 1.28540 1.27501 1.83544 1.21406 0.90073 0.80954 0.72205 1.90859 1.55991 1.48436 1.47073 1.19181 0.89311 0.95313 1.11848 1.22230 0.93039 1.00324 0.86371 1.21814 0.95982 0.97472 0.99764 1.21594 1.00542 0.92000 0.85844 1.30456 1.01486 1.23889 1.22424 1.02918 0.70837 0.73017 0.73504 1.93773 1.84306 1.81941 1.34283 1.93756 1.49662 1.86237 1.63932 1.93652 1.77563 1.83641 1.91612 1.21111 0.94317 0.97083 0.88228 0.91389 0.91121 0.91065 0.89269 0.89295 0.90665 0.90609 0.81471 0.79615 0.80234 0.82843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.15 13.97 21.65 0.30 -55.85 16 2 C 0.04 2.07 5.50 84.86 0.47 2.54 16 3 Si 0.93 42.84 27.74 68.60 1.90 44.74 16 4 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 5 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 6 H -0.23 -9.87 6.74 99.48 0.67 -9.20 16 7 C -0.53 -30.41 10.04 67.95 0.68 -29.73 16 8 H 0.05 3.19 8.03 -2.91 -0.02 3.16 16 9 S -0.20 -9.29 19.41 -56.49 -1.10 -10.39 16 10 C -0.08 -2.68 5.67 71.98 0.41 -2.27 16 11 C -0.09 -2.25 5.60 30.60 0.17 -2.07 16 12 C 0.08 1.85 5.48 71.98 0.39 2.24 16 13 O -0.34 -7.39 9.47 -56.18 -0.53 -7.92 16 14 C 0.51 11.21 7.90 70.33 0.56 11.76 16 15 O -0.53 -14.86 16.14 19.93 0.32 -14.54 16 16 C -0.15 -2.45 5.87 -20.10 -0.12 -2.57 16 17 C 0.00 -0.02 9.62 22.54 0.22 0.20 16 18 C -0.13 -0.65 10.03 22.23 0.22 -0.43 16 19 C 0.02 0.12 9.59 22.33 0.21 0.33 16 20 C -0.70 -7.06 5.86 22.23 0.13 -6.93 16 21 S 2.71 28.21 6.69 -56.49 -0.38 27.83 16 22 O -0.94 -15.23 18.04 -128.00 -2.31 -17.54 16 23 O -0.94 -12.95 17.88 -128.00 -2.29 -15.24 16 24 F -0.47 -5.25 17.41 44.97 0.78 -4.47 16 25 C 0.01 0.17 9.16 22.54 0.21 0.37 16 26 H 0.28 15.52 8.31 -92.71 -0.77 14.74 16 27 H 0.07 2.53 8.14 -2.40 -0.02 2.51 16 28 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 29 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 30 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.17 1.15 7.61 -2.91 -0.02 1.12 16 34 H 0.19 -0.41 8.06 -2.91 -0.02 -0.44 16 35 H 0.18 -0.05 8.06 -2.91 -0.02 -0.07 16 36 H 0.15 2.00 7.34 -2.91 -0.02 1.98 16 Total: -1.00 -78.92 354.25 1.34 -77.58 By element: Atomic # 1 Polarization: 1.26 SS G_CDS: 1.08 Total: 2.34 kcal Atomic # 6 Polarization: -30.10 SS G_CDS: 3.55 Total: -26.55 kcal Atomic # 7 Polarization: -56.15 SS G_CDS: 0.30 Total: -55.85 kcal Atomic # 8 Polarization: -50.43 SS G_CDS: -4.81 Total: -55.24 kcal Atomic # 9 Polarization: -5.25 SS G_CDS: 0.78 Total: -4.47 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 1.90 Total: 44.74 kcal Atomic # 16 Polarization: 18.92 SS G_CDS: -1.47 Total: 17.44 kcal Total: -78.92 1.34 -77.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332329547.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.596 kcal (2) G-P(sol) polarization free energy of solvation -78.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -222.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -221.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds