Wall clock time and date at job start Wed Apr 1 2020 05:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86802 * 119.99718 * 2 1 4 4 H 1.48504 * 109.47064 * 272.31152 * 3 2 1 5 5 H 1.48499 * 109.47506 * 32.30946 * 3 2 1 6 6 H 1.48496 * 109.47394 * 152.31340 * 3 2 1 7 7 C 1.37875 * 120.00562 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99443 * 6.31787 * 7 2 1 9 9 C 1.50701 * 120.00183 * 186.04842 * 7 2 1 10 10 O 1.42893 * 112.94454 * 305.46108 * 9 7 2 11 11 C 1.53945 * 113.74002 * 173.86730 * 9 7 2 12 12 N 1.47818 * 86.03421 * 222.08615 * 11 9 7 13 13 C 1.34784 * 134.45115 * 204.64459 * 12 11 9 14 14 O 1.21564 * 119.99260 * 174.26152 * 13 12 11 15 15 C 1.47724 * 120.00253 * 354.26453 * 13 12 11 16 16 C 1.39689 * 120.10241 * 335.84729 * 15 13 12 17 17 C 1.38104 * 119.99361 * 179.97438 * 16 15 13 18 18 F 1.35099 * 119.90733 * 180.02562 * 17 16 15 19 19 C 1.38631 * 120.19253 * 0.02562 * 17 16 15 20 20 Cl 1.73600 * 119.89507 * 179.97438 * 19 17 16 21 21 C 1.38967 * 120.20380 * 359.97438 * 19 17 16 22 22 N 1.39855 * 119.99619 * 179.97438 * 21 19 17 23 23 C 1.38760 * 120.00717 * 359.70320 * 21 19 17 24 24 Cl 1.73601 * 120.09915 * 180.26682 * 23 21 19 25 25 C 1.47577 * 91.05252 * 24.55214 * 12 11 9 26 26 H 0.97002 * 120.00675 * 0.02562 * 1 2 3 27 27 H 0.96703 * 114.00012 * 302.20063 * 10 9 7 28 28 H 1.08999 * 113.76963 * 336.34811 * 11 9 7 29 29 H 1.08996 * 113.77219 * 107.74958 * 11 9 7 30 30 H 1.08003 * 120.00162 * 359.97438 * 16 15 13 31 31 H 0.97000 * 120.00366 * 0.02562 * 22 21 19 32 32 H 0.97003 * 120.00292 * 179.97438 * 22 21 19 33 33 H 1.09001 * 113.76738 * 221.15602 * 25 12 11 34 34 H 1.08992 * 113.76962 * 89.75752 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4476 2.0747 -1.3990 5 1 1.4718 2.6382 0.7483 6 1 3.5702 1.4267 0.6505 7 6 2.0046 -1.1940 0.0005 8 1 1.4695 -2.1265 -0.1020 9 6 3.5053 -1.1974 0.1381 10 8 4.1559 -0.3804 -0.8371 11 6 4.1122 -2.6059 0.2711 12 7 4.9828 -2.0207 1.3126 13 6 6.1930 -2.3338 1.8166 14 8 6.7261 -1.5944 2.6208 15 6 6.8715 -3.5753 1.3916 16 6 6.1248 -4.6489 0.9007 17 6 6.7614 -5.8084 0.5036 18 9 6.0376 -6.8455 0.0286 19 6 8.1411 -5.9111 0.5909 20 17 8.9334 -7.3723 0.0902 21 6 8.8919 -4.8480 1.0780 22 7 10.2836 -4.9565 1.1648 23 6 8.2615 -3.6767 1.4731 24 17 9.1977 -2.3446 2.0755 25 6 3.9964 -0.9553 1.5769 26 1 -0.4851 0.8400 -0.0004 27 1 3.9578 -0.6257 -1.7512 28 1 3.4134 -3.3514 0.6507 29 1 4.6500 -2.9383 -0.6168 30 1 5.0497 -4.5724 0.8318 31 1 10.7247 -5.7737 0.8846 32 1 10.8077 -4.2143 1.5044 33 1 4.4418 0.0278 1.7295 34 1 3.2635 -1.2148 2.3408 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336006841.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:10 Heat of formation + Delta-G solvation = -58.657596 kcal Electronic energy + Delta-G solvation = -25911.318413 eV Core-core repulsion = 21619.526114 eV Total energy + Delta-G solvation = -4291.792300 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 348.023 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.24502 -40.44610 -39.31478 -37.65068 -36.91863 -36.40584 -34.96246 -34.32433 -32.52139 -30.94823 -29.44921 -28.61526 -25.81769 -25.66708 -23.74720 -22.89030 -20.38070 -19.29027 -18.32203 -17.99074 -17.45773 -17.21323 -16.57935 -16.12474 -15.85903 -15.62613 -15.40035 -15.10515 -14.87337 -14.29441 -14.08366 -13.83655 -13.46700 -13.29452 -12.93899 -12.86386 -12.54890 -12.37900 -12.18109 -12.02175 -11.47949 -11.42829 -11.31127 -11.18764 -10.92417 -10.80228 -10.62234 -10.09655 -9.68561 -9.14453 -8.96795 -8.83374 -8.76752 -8.11821 -8.08538 -6.32200 -4.47534 0.24725 0.77591 1.47600 2.05675 2.60574 2.93944 3.25053 3.34202 3.42656 3.44097 3.59019 3.82866 4.26900 4.36080 4.43744 4.74914 4.89312 4.94995 4.99649 5.12629 5.34347 5.48599 5.61657 5.85486 5.96159 6.06585 6.13716 6.37105 6.39578 6.68962 6.72185 7.13934 7.27191 8.01482 8.10129 8.39628 8.60072 8.72019 9.28797 10.76620 Molecular weight = 348.02amu Principal moments of inertia in cm(-1) A = 0.016838 B = 0.003464 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.472252 B = 8081.369040 C = 9315.576629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.087 3.913 3 Si 0.903 3.097 4 H -0.281 1.281 5 H -0.306 1.306 6 H -0.251 1.251 7 C -0.555 4.555 8 H 0.085 0.915 9 C 0.202 3.798 10 O -0.558 6.558 11 C 0.072 3.928 12 N -0.625 5.625 13 C 0.567 3.433 14 O -0.524 6.524 15 C -0.027 4.027 16 C -0.163 4.163 17 C 0.162 3.838 18 F -0.117 7.117 19 C -0.138 4.138 20 Cl -0.041 7.041 21 C 0.259 3.741 22 N -0.856 5.856 23 C -0.075 4.075 24 Cl -0.021 7.021 25 C 0.118 3.882 26 H 0.269 0.731 27 H 0.372 0.628 28 H 0.094 0.906 29 H 0.075 0.925 30 H 0.161 0.839 31 H 0.407 0.593 32 H 0.409 0.591 33 H 0.077 0.923 34 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.823 -12.471 0.286 21.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.119 4.119 3 Si 0.732 3.268 4 H -0.208 1.208 5 H -0.234 1.234 6 H -0.176 1.176 7 C -0.592 4.592 8 H 0.103 0.897 9 C 0.161 3.839 10 O -0.365 6.365 11 C -0.050 4.050 12 N -0.358 5.358 13 C 0.355 3.645 14 O -0.402 6.402 15 C -0.032 4.032 16 C -0.184 4.184 17 C 0.141 3.859 18 F -0.095 7.095 19 C -0.171 4.171 20 Cl -0.013 7.013 21 C 0.149 3.851 22 N -0.397 5.397 23 C -0.108 4.108 24 Cl 0.008 6.992 25 C -0.004 4.004 26 H 0.079 0.921 27 H 0.220 0.780 28 H 0.112 0.888 29 H 0.093 0.907 30 H 0.179 0.821 31 H 0.238 0.762 32 H 0.240 0.760 33 H 0.096 0.904 34 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 18.491 -11.772 1.331 21.961 hybrid contribution 0.492 0.133 -0.626 0.807 sum 18.983 -11.639 0.704 22.278 Atomic orbital electron populations 1.69931 1.06695 1.27944 1.46980 1.24997 0.94687 1.00003 0.92237 0.86466 0.80103 0.81500 0.78691 1.20764 1.23440 1.17566 1.21103 0.87891 0.95558 1.54644 0.89696 1.20496 0.91800 0.85143 0.86446 1.86337 1.73090 1.58858 1.18220 1.24266 0.90589 1.00558 0.89632 1.50122 1.15356 1.31585 1.38767 1.17459 0.80978 0.84450 0.81628 1.90824 1.64466 1.50450 1.34436 1.19592 0.91244 0.95233 0.97082 1.21267 1.02149 0.91321 1.03679 1.16886 0.86712 0.85346 0.97003 1.91577 1.76955 1.55762 1.85195 1.20161 0.91285 0.91045 1.14642 1.98362 1.79662 1.33398 1.89851 1.16560 0.85379 0.90118 0.93022 1.42633 1.02511 1.21682 1.72908 1.20151 0.91322 0.90529 1.08813 1.98398 1.71187 1.43685 1.85916 1.23902 0.86916 0.90717 0.98818 0.92139 0.78026 0.88791 0.90663 0.82117 0.76245 0.75987 0.90432 0.88174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.60 13.96 55.43 0.77 -23.82 16 2 C 0.09 2.27 5.47 -17.82 -0.10 2.18 16 3 Si 0.90 21.23 25.80 -169.99 -4.39 16.85 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.31 -7.35 7.11 56.52 0.40 -6.95 16 6 H -0.25 -5.87 4.99 56.52 0.28 -5.59 16 7 C -0.55 -13.43 9.17 -34.44 -0.32 -13.75 16 8 H 0.09 2.19 8.06 -52.49 -0.42 1.77 16 9 C 0.20 4.14 0.91 -90.84 -0.08 4.05 16 10 O -0.56 -11.34 10.35 -35.23 -0.36 -11.70 16 11 C 0.07 1.21 5.67 -2.84 -0.02 1.19 16 12 N -0.62 -11.49 3.58 -179.27 -0.64 -12.13 16 13 C 0.57 10.34 7.70 -12.38 -0.10 10.24 16 14 O -0.52 -10.85 15.25 5.31 0.08 -10.77 16 15 C -0.03 -0.40 5.82 -104.97 -0.61 -1.01 16 16 C -0.16 -2.11 8.80 -39.09 -0.34 -2.45 16 17 C 0.16 1.95 7.26 -39.49 -0.29 1.66 16 18 F -0.12 -1.41 16.82 2.25 0.04 -1.37 16 19 C -0.14 -1.54 6.35 -39.17 -0.25 -1.79 16 20 Cl -0.04 -0.39 27.21 -51.86 -1.41 -1.80 16 21 C 0.26 2.87 6.74 -83.73 -0.56 2.31 16 22 N -0.86 -6.92 9.00 32.43 0.29 -6.62 16 23 C -0.08 -1.01 6.36 -38.88 -0.25 -1.26 16 24 Cl -0.02 -0.29 24.96 -51.86 -1.29 -1.58 16 25 C 0.12 2.40 7.28 -2.97 -0.02 2.37 16 26 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 27 H 0.37 6.26 9.11 45.56 0.41 6.68 16 28 H 0.09 1.45 7.70 -51.93 -0.40 1.05 16 29 H 0.08 1.11 7.85 -51.93 -0.41 0.70 16 30 H 0.16 1.99 5.49 -52.48 -0.29 1.70 16 31 H 0.41 2.58 7.48 -40.82 -0.31 2.28 16 32 H 0.41 2.94 7.50 -40.82 -0.31 2.63 16 33 H 0.08 1.69 6.87 -51.93 -0.36 1.33 16 34 H 0.10 1.97 8.09 -51.93 -0.42 1.55 16 LS Contribution 320.12 15.07 4.82 4.82 Total: -1.00 -29.91 320.12 -6.77 -36.68 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -1.75 Total: 7.71 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: -2.93 Total: 3.75 kcal Atomic # 7 Polarization: -43.00 SS G_CDS: 0.42 Total: -42.58 kcal Atomic # 8 Polarization: -22.18 SS G_CDS: -0.28 Total: -22.47 kcal Atomic # 9 Polarization: -1.41 SS G_CDS: 0.04 Total: -1.37 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.39 Total: 16.85 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -2.71 Total: -3.39 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.91 -6.77 -36.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336006841.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.982 kcal (2) G-P(sol) polarization free energy of solvation -29.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds