Wall clock time and date at job start Wed Apr 1 2020 05:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86802 * 119.99718 * 2 1 4 4 H 1.48504 * 109.47064 * 272.31152 * 3 2 1 5 5 H 1.48499 * 109.47506 * 32.30946 * 3 2 1 6 6 H 1.48496 * 109.47394 * 152.31340 * 3 2 1 7 7 C 1.37875 * 120.00562 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99443 * 6.31787 * 7 2 1 9 9 C 1.50701 * 120.00183 * 186.04842 * 7 2 1 10 10 O 1.42893 * 112.94454 * 305.46108 * 9 7 2 11 11 C 1.53945 * 113.74002 * 173.86730 * 9 7 2 12 12 N 1.47818 * 86.03421 * 222.08615 * 11 9 7 13 13 C 1.34784 * 134.45115 * 204.64459 * 12 11 9 14 14 O 1.21564 * 119.99260 * 174.26152 * 13 12 11 15 15 C 1.47724 * 120.00253 * 354.26453 * 13 12 11 16 16 C 1.39689 * 120.10241 * 335.84729 * 15 13 12 17 17 C 1.38104 * 119.99361 * 179.97438 * 16 15 13 18 18 F 1.35099 * 119.90733 * 180.02562 * 17 16 15 19 19 C 1.38631 * 120.19253 * 0.02562 * 17 16 15 20 20 Cl 1.73600 * 119.89507 * 179.97438 * 19 17 16 21 21 C 1.38967 * 120.20380 * 359.97438 * 19 17 16 22 22 N 1.39855 * 119.99619 * 179.97438 * 21 19 17 23 23 C 1.38760 * 120.00717 * 359.70320 * 21 19 17 24 24 Cl 1.73601 * 120.09915 * 180.26682 * 23 21 19 25 25 C 1.47577 * 91.05252 * 24.55214 * 12 11 9 26 26 H 0.97002 * 120.00675 * 0.02562 * 1 2 3 27 27 H 0.96703 * 114.00012 * 302.20063 * 10 9 7 28 28 H 1.08999 * 113.76963 * 336.34811 * 11 9 7 29 29 H 1.08996 * 113.77219 * 107.74958 * 11 9 7 30 30 H 1.08003 * 120.00162 * 359.97438 * 16 15 13 31 31 H 0.97000 * 120.00366 * 0.02562 * 22 21 19 32 32 H 0.97003 * 120.00292 * 179.97438 * 22 21 19 33 33 H 1.09001 * 113.76738 * 221.15602 * 25 12 11 34 34 H 1.08992 * 113.76962 * 89.75752 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4476 2.0747 -1.3990 5 1 1.4718 2.6382 0.7483 6 1 3.5702 1.4267 0.6505 7 6 2.0046 -1.1940 0.0005 8 1 1.4695 -2.1265 -0.1020 9 6 3.5053 -1.1974 0.1381 10 8 4.1559 -0.3804 -0.8371 11 6 4.1122 -2.6059 0.2711 12 7 4.9828 -2.0207 1.3126 13 6 6.1930 -2.3338 1.8166 14 8 6.7261 -1.5944 2.6208 15 6 6.8715 -3.5753 1.3916 16 6 6.1248 -4.6489 0.9007 17 6 6.7614 -5.8084 0.5036 18 9 6.0376 -6.8455 0.0286 19 6 8.1411 -5.9111 0.5909 20 17 8.9334 -7.3723 0.0902 21 6 8.8919 -4.8480 1.0780 22 7 10.2836 -4.9565 1.1648 23 6 8.2615 -3.6767 1.4731 24 17 9.1977 -2.3446 2.0755 25 6 3.9964 -0.9553 1.5769 26 1 -0.4851 0.8400 -0.0004 27 1 3.9578 -0.6257 -1.7512 28 1 3.4134 -3.3514 0.6507 29 1 4.6500 -2.9383 -0.6168 30 1 5.0497 -4.5724 0.8318 31 1 10.7247 -5.7737 0.8846 32 1 10.8077 -4.2143 1.5044 33 1 4.4418 0.0278 1.7295 34 1 3.2635 -1.2148 2.3408 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336006841.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:10 Heat of formation + Delta-G solvation = -80.957732 kcal Electronic energy + Delta-G solvation = -25912.285420 eV Core-core repulsion = 21619.526114 eV Total energy + Delta-G solvation = -4292.759306 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 348.023 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -50.18300 -41.71665 -40.51641 -39.04383 -37.85279 -37.38941 -36.04287 -35.71933 -34.48470 -32.03951 -30.63881 -29.86731 -27.36879 -27.26355 -24.94448 -23.84076 -21.87327 -20.63183 -19.70370 -19.21140 -18.75180 -18.22558 -17.75974 -17.10498 -17.01742 -16.89090 -16.69634 -16.53945 -16.15070 -15.85910 -15.25713 -14.98885 -14.89716 -14.73853 -14.26959 -14.13309 -13.84220 -13.74142 -13.45930 -13.37059 -12.95790 -12.62758 -12.53282 -12.34320 -12.30410 -12.18004 -11.90471 -11.82521 -11.16887 -10.95082 -10.74188 -10.39829 -9.94735 -9.58413 -8.96535 -8.34253 -6.48531 -0.78346 -0.16674 0.57860 1.07876 1.44489 1.47184 1.49801 1.66262 1.73205 2.25251 2.30478 2.40943 2.88293 2.98886 3.08479 3.41702 3.50037 3.82024 3.90181 3.99639 4.05659 4.41216 4.46733 4.48395 4.60658 4.70901 4.73961 4.87369 5.10972 5.17168 5.46661 5.93764 6.08013 6.52057 6.62688 6.70262 6.98206 7.12960 7.32704 8.78191 Molecular weight = 348.02amu Principal moments of inertia in cm(-1) A = 0.016838 B = 0.003464 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.472252 B = 8081.369040 C = 9315.576629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.045 3.955 3 Si 0.953 3.047 4 H -0.279 1.279 5 H -0.316 1.316 6 H -0.250 1.250 7 C -0.539 4.539 8 H 0.065 0.935 9 C 0.195 3.805 10 O -0.566 6.566 11 C 0.089 3.911 12 N -0.626 5.626 13 C 0.566 3.434 14 O -0.556 6.556 15 C -0.042 4.042 16 C -0.160 4.160 17 C 0.165 3.835 18 F -0.115 7.115 19 C -0.135 4.135 20 Cl -0.022 7.022 21 C 0.270 3.730 22 N -0.840 5.840 23 C -0.085 4.085 24 Cl -0.029 7.029 25 C 0.112 3.888 26 H 0.268 0.732 27 H 0.387 0.613 28 H 0.109 0.891 29 H 0.102 0.898 30 H 0.166 0.834 31 H 0.417 0.583 32 H 0.415 0.585 33 H 0.060 0.940 34 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.942 -14.250 -0.415 24.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.157 4.157 3 Si 0.782 3.218 4 H -0.205 1.205 5 H -0.245 1.245 6 H -0.175 1.175 7 C -0.577 4.577 8 H 0.083 0.917 9 C 0.154 3.846 10 O -0.375 6.375 11 C -0.033 4.033 12 N -0.359 5.359 13 C 0.355 3.645 14 O -0.435 6.435 15 C -0.046 4.046 16 C -0.182 4.182 17 C 0.144 3.856 18 F -0.093 7.093 19 C -0.169 4.169 20 Cl 0.007 6.993 21 C 0.158 3.842 22 N -0.382 5.382 23 C -0.118 4.118 24 Cl 0.000 7.000 25 C -0.011 4.011 26 H 0.077 0.923 27 H 0.237 0.763 28 H 0.127 0.873 29 H 0.120 0.880 30 H 0.184 0.816 31 H 0.250 0.750 32 H 0.248 0.752 33 H 0.078 0.922 34 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 20.659 -13.584 0.603 24.732 hybrid contribution -0.068 0.548 -0.431 0.700 sum 20.591 -13.036 0.172 24.371 Atomic orbital electron populations 1.70026 1.08051 1.28398 1.49939 1.25571 0.94951 1.02507 0.92650 0.85680 0.78912 0.78794 0.78408 1.20528 1.24507 1.17458 1.21329 0.89986 0.94263 1.52117 0.91672 1.20401 0.89748 0.87883 0.86557 1.86292 1.72662 1.59191 1.19318 1.24207 0.90333 0.98463 0.90272 1.50044 1.15508 1.31160 1.39188 1.17907 0.80475 0.85126 0.80956 1.90800 1.65093 1.51845 1.35803 1.19275 0.91763 0.94318 0.99282 1.21191 1.02251 0.91132 1.03579 1.16825 0.87004 0.85042 0.96761 1.91586 1.77019 1.55598 1.85134 1.20211 0.91178 0.91680 1.13784 1.98377 1.79216 1.32131 1.89542 1.16461 0.86426 0.89185 0.92138 1.42645 1.01403 1.22389 1.71733 1.20209 0.90985 0.91108 1.09514 1.98393 1.71213 1.44313 1.86083 1.23774 0.87721 0.90737 0.98829 0.92274 0.76272 0.87280 0.87982 0.81639 0.74969 0.75245 0.92200 0.88026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.59 13.96 21.45 0.30 -52.29 16 2 C 0.05 2.36 5.47 84.66 0.46 2.82 16 3 Si 0.95 44.10 25.80 68.60 1.77 45.87 16 4 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 5 H -0.32 -15.01 7.11 99.48 0.71 -14.31 16 6 H -0.25 -11.46 4.99 99.48 0.50 -10.96 16 7 C -0.54 -25.92 9.17 25.60 0.23 -25.68 16 8 H 0.07 3.36 8.06 -2.91 -0.02 3.34 16 9 C 0.20 7.75 0.91 -10.88 -0.01 7.74 16 10 O -0.57 -22.01 10.35 -148.98 -1.54 -23.55 16 11 C 0.09 2.78 5.67 86.44 0.49 3.27 16 12 N -0.63 -22.25 3.58 -843.19 -3.02 -25.27 16 13 C 0.57 20.08 7.70 86.75 0.67 20.75 16 14 O -0.56 -22.88 15.25 -3.92 -0.06 -22.94 16 15 C -0.04 -1.17 5.82 -20.09 -0.12 -1.29 16 16 C -0.16 -3.78 8.80 22.59 0.20 -3.58 16 17 C 0.16 3.52 7.26 22.33 0.16 3.69 16 18 F -0.12 -2.46 16.82 44.97 0.76 -1.70 16 19 C -0.13 -2.62 6.35 22.54 0.14 -2.47 16 20 Cl -0.02 -0.34 27.21 -2.72 -0.07 -0.41 16 21 C 0.27 5.29 6.74 38.16 0.26 5.54 16 22 N -0.84 -11.20 9.00 -51.31 -0.46 -11.67 16 23 C -0.08 -2.14 6.36 22.73 0.14 -2.00 16 24 Cl -0.03 -0.77 24.96 -2.72 -0.07 -0.84 16 25 C 0.11 4.50 7.28 86.49 0.63 5.13 16 26 H 0.27 14.52 8.31 -92.71 -0.77 13.75 16 27 H 0.39 12.22 9.11 -74.06 -0.67 11.54 16 28 H 0.11 3.11 7.70 -2.39 -0.02 3.09 16 29 H 0.10 2.68 7.85 -2.39 -0.02 2.66 16 30 H 0.17 3.67 5.49 -2.91 -0.02 3.65 16 31 H 0.42 3.95 7.48 -92.71 -0.69 3.26 16 32 H 0.42 4.91 7.50 -92.71 -0.70 4.22 16 33 H 0.06 2.61 6.87 -2.39 -0.02 2.59 16 34 H 0.10 3.99 8.09 -2.39 -0.02 3.97 16 Total: -1.00 -63.89 320.12 -0.17 -64.06 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: -1.04 Total: 14.81 kcal Atomic # 6 Polarization: 10.65 SS G_CDS: 3.26 Total: 13.92 kcal Atomic # 7 Polarization: -86.05 SS G_CDS: -3.18 Total: -89.22 kcal Atomic # 8 Polarization: -44.88 SS G_CDS: -1.60 Total: -46.49 kcal Atomic # 9 Polarization: -2.46 SS G_CDS: 0.76 Total: -1.70 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 1.77 Total: 45.87 kcal Atomic # 17 Polarization: -1.11 SS G_CDS: -0.14 Total: -1.25 kcal Total: -63.89 -0.17 -64.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336006841.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.898 kcal (2) G-P(sol) polarization free energy of solvation -63.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds