Wall clock time and date at job start Wed Apr 1 2020 04:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50695 * 120.00322 * 2 1 4 4 N 1.46506 * 109.47388 * 124.99880 * 3 2 1 5 5 C 1.36732 * 127.13608 * 265.55353 * 4 3 2 6 6 C 1.50705 * 126.35010 * 359.95933 * 5 4 3 7 7 C 1.52996 * 109.47197 * 270.28845 * 6 5 4 8 8 C 1.52996 * 109.47380 * 179.97438 * 7 6 5 9 9 C 1.50696 * 109.47616 * 180.02562 * 8 7 6 10 10 H 1.08005 * 119.99701 * 0.02562 * 9 8 7 11 11 C 1.37876 * 120.00700 * 180.02562 * 9 8 7 12 12 N 1.31518 * 119.99281 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 120.00387 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47072 * 89.99762 * 13 11 9 15 15 H 1.48500 * 109.46984 * 209.99667 * 13 11 9 16 16 H 1.48497 * 109.46997 * 329.99496 * 13 11 9 17 17 N 1.30295 * 107.30487 * 180.22533 * 5 4 3 18 18 N 1.28529 * 110.05037 * 359.77083 * 17 5 4 19 19 C 1.31213 * 109.86136 * 0.02562 * 18 17 5 20 20 N 1.38584 * 126.47219 * 179.97438 * 19 18 17 21 21 C 1.44253 * 110.99968 * 295.01319 * 20 19 18 22 22 C 1.54247 * 108.64509 * 219.85124 * 21 20 19 23 23 C 1.46140 * 111.90292 * 281.38284 * 22 21 20 24 24 N 1.48107 * 112.12174 * 60.90781 * 23 22 21 25 25 C 1.46900 * 111.00315 * 156.44561 * 24 23 22 26 26 C 1.53001 * 109.47029 * 64.44728 * 25 24 23 27 27 C 1.44332 * 109.94048 * 279.59512 * 24 23 22 28 28 C 1.48192 * 111.00047 * 63.25275 * 20 19 18 29 29 H 1.08002 * 119.99751 * 359.97438 * 1 2 3 30 30 H 1.08006 * 119.99691 * 180.02562 * 1 2 3 31 31 H 1.08002 * 119.99751 * 180.02562 * 2 1 3 32 32 H 1.09002 * 109.46978 * 4.99988 * 3 2 1 33 33 H 1.08999 * 109.47626 * 245.00304 * 3 2 1 34 34 H 1.08995 * 109.47090 * 30.29263 * 6 5 4 35 35 H 1.09003 * 109.47025 * 150.29034 * 6 5 4 36 36 H 1.09008 * 109.47177 * 300.00138 * 7 6 5 37 37 H 1.09003 * 109.46979 * 60.00161 * 7 6 5 38 38 H 1.08995 * 109.47150 * 300.00567 * 8 7 6 39 39 H 1.09003 * 109.46782 * 60.00226 * 8 7 6 40 40 H 0.96997 * 119.99432 * 180.02562 * 12 11 9 41 41 H 1.09000 * 109.60679 * 100.10259 * 21 20 19 42 42 H 1.08999 * 109.74597 * 339.68077 * 21 20 19 43 43 H 1.08995 * 108.99886 * 160.75728 * 22 21 20 44 44 H 1.09006 * 108.92825 * 41.95726 * 22 21 20 45 45 H 1.09005 * 108.93681 * 181.55956 * 23 22 21 46 46 H 1.09001 * 108.94034 * 300.25473 * 23 22 21 47 47 H 1.08989 * 109.47233 * 184.45140 * 25 24 23 48 48 H 1.09005 * 109.46899 * 304.45031 * 25 24 23 49 49 H 1.09003 * 109.46375 * 66.02572 * 26 25 24 50 50 H 1.08994 * 109.46930 * 186.02187 * 26 25 24 51 51 H 1.08992 * 109.47533 * 306.02531 * 26 25 24 52 52 H 1.08996 * 108.91205 * 333.24148 * 27 24 23 53 53 H 1.09000 * 108.81813 * 214.72329 * 27 24 23 54 54 H 1.08999 * 108.82587 * 312.53365 * 28 20 19 55 55 H 1.09005 * 108.82215 * 70.94992 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9939 1.3318 1.1315 5 6 2.7729 1.8692 2.3692 6 6 1.5136 2.5543 2.8338 7 6 1.6045 4.0506 2.5279 8 6 0.3258 4.7462 2.9989 9 6 0.4150 6.2199 2.6970 10 1 1.2957 6.6204 2.2168 11 6 -0.6274 7.0571 3.0338 12 7 -1.6999 6.5693 3.6182 13 14 -0.5170 8.8837 2.6590 14 1 -1.0709 9.1458 1.3064 15 1 -1.2962 9.6442 3.6688 16 1 0.9038 9.3132 2.7039 17 7 3.8551 1.6841 3.0709 18 7 4.7362 1.0669 2.3675 19 6 4.2596 0.8236 1.1694 20 7 4.9190 0.1769 0.1362 21 6 6.0593 0.9409 -0.3076 22 6 6.1403 0.8574 -1.8457 23 6 6.7147 -0.4096 -2.2934 24 7 5.9058 -1.5724 -1.8609 25 6 6.1386 -2.7300 -2.7348 26 6 7.5932 -3.1853 -2.6015 27 6 6.2037 -1.8953 -0.4861 28 6 5.2297 -1.2257 0.5001 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9354 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3587 2.1316 0.0896 33 1 2.6213 1.4026 -0.9314 34 1 0.6554 2.1286 2.3138 35 1 1.3962 2.4095 3.9077 36 1 2.4628 4.4763 3.0479 37 1 1.7219 4.1954 1.4539 38 1 -0.5321 4.3204 2.4786 39 1 0.2079 4.6014 4.0728 40 1 -2.4335 7.1581 3.8548 41 1 6.9685 0.5283 0.1296 42 1 5.9465 1.9814 -0.0032 43 1 6.7582 1.6766 -2.2134 44 1 5.1365 0.9574 -2.2587 45 1 6.7749 -0.4057 -3.3818 46 1 7.7203 -0.5064 -1.8842 47 1 5.4749 -3.5441 -2.4439 48 1 5.9388 -2.4503 -3.7692 49 1 7.7639 -3.5653 -1.5942 50 1 7.7950 -3.9738 -3.3264 51 1 8.2568 -2.3412 -2.7886 52 1 7.2176 -1.5668 -0.2578 53 1 6.1468 -2.9763 -0.3585 54 1 5.6721 -1.2409 1.4962 55 1 4.3021 -1.7979 0.5189 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339022144.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:13 Heat of formation + Delta-G solvation = 90.598476 kcal Electronic energy + Delta-G solvation = -31578.301185 eV Core-core repulsion = 27651.508896 eV Total energy + Delta-G solvation = -3926.792290 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.238 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -44.06309 -40.61070 -37.72116 -37.28824 -36.40531 -34.49281 -34.06118 -33.61227 -32.03422 -30.98145 -28.96066 -27.92205 -27.60279 -26.89933 -25.54292 -24.12372 -23.16476 -22.50508 -21.76449 -21.15861 -20.99843 -20.49757 -18.62223 -18.30890 -17.74297 -17.54667 -16.76901 -16.51978 -16.26724 -16.06041 -15.81771 -15.75015 -15.35256 -15.14264 -14.92775 -14.58921 -14.38841 -14.20548 -14.12118 -13.87900 -13.57236 -13.47636 -13.18423 -12.99789 -12.80278 -12.69768 -12.68784 -12.63571 -12.48371 -12.42689 -12.31022 -12.10181 -11.95279 -11.76050 -11.69152 -11.54167 -11.45706 -11.39049 -11.24032 -11.06371 -10.52897 -10.50935 -10.00433 -9.71033 -9.17807 -8.18248 -6.28106 0.66847 0.93377 1.40717 1.42025 1.52832 1.57178 1.72568 2.42290 2.62072 2.97923 3.15159 3.34497 3.67499 3.77134 3.84552 3.86777 3.94171 3.98205 4.02744 4.17219 4.19085 4.28749 4.32964 4.38727 4.40970 4.46107 4.51927 4.54986 4.59365 4.60718 4.63818 4.68789 4.80099 4.85204 4.88095 4.95762 5.01338 5.04513 5.06215 5.07822 5.09536 5.13535 5.18433 5.33953 5.39382 5.51529 5.54635 5.60611 5.69855 5.75033 5.86608 5.87669 6.17632 6.24347 6.27056 6.30316 6.87320 7.40377 7.66756 8.93060 Molecular weight = 347.24amu Principal moments of inertia in cm(-1) A = 0.017235 B = 0.002196 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.217315 B =12750.114256 C =13000.708340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.182 4.182 3 C 0.138 3.862 4 N -0.454 5.454 5 C 0.200 3.800 6 C -0.023 4.023 7 C -0.084 4.084 8 C 0.028 3.972 9 C -0.543 4.543 10 H 0.054 0.946 11 C 0.003 3.997 12 N -0.928 5.928 13 Si 0.959 3.041 14 H -0.270 1.270 15 H -0.282 1.282 16 H -0.269 1.269 17 N -0.329 5.329 18 N -0.350 5.350 19 C 0.350 3.650 20 N -0.452 5.452 21 C 0.079 3.921 22 C -0.103 4.103 23 C 0.060 3.940 24 N -0.532 5.532 25 C 0.053 3.947 26 C -0.188 4.188 27 C 0.067 3.933 28 C 0.084 3.916 29 H 0.105 0.895 30 H 0.120 0.880 31 H 0.113 0.887 32 H 0.102 0.898 33 H 0.116 0.884 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.040 0.960 37 H 0.052 0.948 38 H 0.007 0.993 39 H -0.004 1.004 40 H 0.264 0.736 41 H 0.051 0.949 42 H 0.049 0.951 43 H 0.087 0.913 44 H 0.072 0.928 45 H 0.084 0.916 46 H 0.039 0.961 47 H 0.078 0.922 48 H 0.081 0.919 49 H 0.052 0.948 50 H 0.068 0.932 51 H 0.053 0.947 52 H 0.042 0.958 53 H 0.092 0.908 54 H 0.037 0.963 55 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.047 -22.193 -17.583 32.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.201 4.201 3 C 0.017 3.983 4 N -0.146 5.146 5 C -0.069 4.069 6 C -0.063 4.063 7 C -0.123 4.123 8 C -0.009 4.009 9 C -0.581 4.581 10 H 0.072 0.928 11 C -0.195 4.195 12 N -0.568 5.568 13 Si 0.784 3.216 14 H -0.195 1.195 15 H -0.207 1.207 16 H -0.194 1.194 17 N -0.169 5.169 18 N -0.194 5.194 19 C -0.007 4.007 20 N -0.178 5.178 21 C -0.049 4.049 22 C -0.142 4.142 23 C -0.067 4.067 24 N -0.256 5.256 25 C -0.074 4.074 26 C -0.247 4.247 27 C -0.063 4.063 28 C -0.042 4.042 29 H 0.123 0.877 30 H 0.139 0.861 31 H 0.131 0.869 32 H 0.120 0.880 33 H 0.134 0.866 34 H 0.116 0.884 35 H 0.111 0.889 36 H 0.059 0.941 37 H 0.071 0.929 38 H 0.025 0.975 39 H 0.015 0.985 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.105 0.895 44 H 0.091 0.909 45 H 0.102 0.898 46 H 0.057 0.943 47 H 0.097 0.903 48 H 0.100 0.900 49 H 0.071 0.929 50 H 0.087 0.913 51 H 0.072 0.928 52 H 0.060 0.940 53 H 0.110 0.890 54 H 0.056 0.944 55 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 15.069 -22.024 -16.804 31.535 hybrid contribution 0.307 0.862 -0.005 0.915 sum 15.376 -21.161 -16.809 31.093 Atomic orbital electron populations 1.24196 0.95279 1.03609 0.95893 1.22882 0.96268 0.97121 1.03849 1.21157 0.91537 0.98315 0.87311 1.46538 1.12983 1.42431 1.12637 1.25086 0.99239 0.99963 0.82579 1.20129 0.89117 0.94300 1.02747 1.21346 0.98861 0.92017 1.00042 1.18971 0.92567 0.94114 0.95227 1.21635 1.02537 0.94651 1.39264 0.92798 1.25885 0.95084 1.03574 0.94948 1.70073 1.07254 1.37064 1.42412 0.85530 0.78280 0.79540 0.78213 1.19506 1.20740 1.19364 1.73958 0.99293 1.16842 1.26787 1.74457 1.24615 1.17517 1.02778 1.22535 0.85446 1.00312 0.92424 1.57279 1.28348 1.02378 1.29824 1.21855 0.90006 0.95849 0.97183 1.20579 1.02968 0.98033 0.92619 1.21092 0.94247 0.90338 1.00990 1.61669 1.56273 1.05987 1.01630 1.22304 0.95374 0.92151 0.97573 1.22446 0.98002 1.01949 1.02266 1.21827 0.95843 1.00120 0.88480 1.22555 1.00295 0.84483 0.96911 0.87665 0.86137 0.86869 0.87986 0.86579 0.88430 0.88910 0.94071 0.92908 0.97486 0.98515 0.92752 0.93036 0.93195 0.89466 0.90942 0.89760 0.94328 0.90339 0.90034 0.92863 0.91342 0.92767 0.93984 0.88979 0.94436 0.90866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 14.32 67.78 0.97 -1.65 16 2 C -0.18 -3.56 9.85 25.64 0.25 -3.30 16 3 C 0.14 3.09 6.39 85.63 0.55 3.64 16 4 N -0.45 -13.29 2.79 -518.91 -1.45 -14.74 16 5 C 0.20 6.98 7.32 137.64 1.01 7.99 16 6 C -0.02 -0.80 5.38 29.85 0.16 -0.64 16 7 C -0.08 -3.47 5.13 30.59 0.16 -3.31 16 8 C 0.03 1.45 4.97 29.85 0.15 1.60 16 9 C -0.54 -30.76 9.11 25.60 0.23 -30.52 16 10 H 0.05 2.98 7.74 -2.91 -0.02 2.96 16 11 C 0.00 0.18 5.46 84.65 0.46 0.65 16 12 N -0.93 -55.52 13.29 21.45 0.28 -55.24 16 13 Si 0.96 44.25 29.54 68.60 2.03 46.28 16 14 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 15 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 16 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 17 N -0.33 -13.10 12.18 -49.54 -0.60 -13.70 16 18 N -0.35 -12.86 12.03 -58.01 -0.70 -13.56 16 19 C 0.35 10.44 6.10 260.11 1.59 12.03 16 20 N -0.45 -10.19 4.16 -704.95 -2.93 -13.12 16 21 C 0.08 1.61 5.35 87.22 0.47 2.08 16 22 C -0.10 -1.49 5.66 28.91 0.16 -1.32 16 23 C 0.06 0.70 4.06 83.96 0.34 1.04 16 24 N -0.53 -6.72 4.62 -910.59 -4.21 -10.93 16 25 C 0.05 0.48 5.78 86.30 0.50 0.97 16 26 C -0.19 -1.42 9.36 71.98 0.67 -0.75 16 27 C 0.07 0.91 4.03 87.10 0.35 1.26 16 28 C 0.08 1.65 5.71 86.37 0.49 2.14 16 29 H 0.11 1.84 7.84 -2.91 -0.02 1.82 16 30 H 0.12 1.67 8.06 -2.91 -0.02 1.65 16 31 H 0.11 2.23 8.06 -2.91 -0.02 2.21 16 32 H 0.10 2.31 7.31 -2.39 -0.02 2.29 16 33 H 0.12 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.10 2.96 7.81 -2.39 -0.02 2.94 16 35 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 36 H 0.04 1.82 8.14 -2.38 -0.02 1.80 16 37 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 39 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 40 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 41 H 0.05 1.04 6.96 -2.39 -0.02 1.02 16 42 H 0.05 1.24 7.61 -2.39 -0.02 1.22 16 43 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.07 1.20 8.12 -2.38 -0.02 1.18 16 45 H 0.08 0.78 7.73 -2.38 -0.02 0.76 16 46 H 0.04 0.44 6.76 -2.39 -0.02 0.42 16 47 H 0.08 0.67 8.08 -2.39 -0.02 0.66 16 48 H 0.08 0.66 7.95 -2.38 -0.02 0.64 16 49 H 0.05 0.44 7.03 -2.39 -0.02 0.42 16 50 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 51 H 0.05 0.45 6.78 -2.39 -0.02 0.43 16 52 H 0.04 0.58 6.54 -2.39 -0.02 0.56 16 53 H 0.09 0.99 6.99 -2.39 -0.02 0.97 16 54 H 0.04 0.86 7.85 -2.39 -0.02 0.84 16 55 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 Total: -1.00 -70.05 430.72 1.77 -68.27 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: 0.84 Total: 14.84 kcal Atomic # 6 Polarization: -16.62 SS G_CDS: 8.52 Total: -8.11 kcal Atomic # 7 Polarization: -111.68 SS G_CDS: -9.60 Total: -121.28 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -70.05 1.77 -68.27 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339022144.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.870 kcal (2) G-P(sol) polarization free energy of solvation -70.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds