Wall clock time and date at job start Wed Apr 1 2020 05:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36739 * 127.13906 * 2 1 4 4 C 1.50701 * 126.34524 * 0.02562 * 3 2 1 5 5 C 1.52997 * 109.47212 * 89.99792 * 4 3 2 6 6 C 1.50697 * 109.47466 * 179.97438 * 5 4 3 7 7 H 1.08001 * 119.99890 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00428 * 179.97438 * 6 5 4 9 9 N 1.31519 * 119.99563 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00432 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.46616 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.47104 * 119.99966 * 10 8 6 13 13 H 1.48489 * 109.47200 * 240.00246 * 10 8 6 14 14 N 1.30294 * 107.30605 * 180.26193 * 3 2 1 15 15 N 1.28532 * 110.05304 * 359.56486 * 14 3 2 16 16 C 1.31227 * 109.85796 * 0.44846 * 15 14 3 17 17 N 1.38574 * 126.46884 * 179.73195 * 16 15 14 18 18 C 1.47446 * 110.99884 * 239.87029 * 17 16 15 19 19 C 1.54328 * 107.22827 * 123.25800 * 18 17 16 20 20 C 1.55136 * 103.01891 * 22.28717 * 19 18 17 21 21 H 1.09005 * 110.98972 * 82.43709 * 20 19 18 22 22 C 1.52997 * 110.98894 * 206.21403 * 20 19 18 23 23 N 1.46902 * 109.47000 * 293.54416 * 22 20 19 24 24 C 1.46842 * 111.00478 * 294.20958 * 23 22 20 25 25 C 1.53040 * 109.52320 * 174.15943 * 24 23 22 26 26 C 1.53112 * 109.27868 * 59.18321 * 25 24 23 27 27 C 1.53118 * 109.16006 * 302.34394 * 26 25 24 28 28 C 1.46854 * 110.99809 * 169.99686 * 23 22 20 29 29 C 1.47844 * 111.00128 * 0.71663 * 17 16 15 30 30 H 1.09007 * 109.46789 * 90.02086 * 1 2 3 31 31 H 1.09001 * 109.47114 * 210.02036 * 1 2 3 32 32 H 1.08998 * 109.46836 * 330.02471 * 1 2 3 33 33 H 1.09002 * 109.47060 * 209.99847 * 4 3 2 34 34 H 1.09001 * 109.47380 * 329.99935 * 4 3 2 35 35 H 1.09002 * 109.47153 * 299.99998 * 5 4 3 36 36 H 1.08998 * 109.47533 * 59.99628 * 5 4 3 37 37 H 0.97002 * 119.99731 * 180.02562 * 9 8 6 38 38 H 1.08991 * 109.89087 * 242.66556 * 18 17 16 39 39 H 1.09000 * 109.88727 * 3.69868 * 18 17 16 40 40 H 1.09006 * 110.69901 * 140.66899 * 19 18 17 41 41 H 1.08997 * 110.70472 * 263.90283 * 19 18 17 42 42 H 1.08999 * 109.47156 * 53.54443 * 22 20 19 43 43 H 1.08997 * 109.47153 * 173.54597 * 22 20 19 44 44 H 1.09004 * 109.46602 * 294.17704 * 24 23 22 45 45 H 1.09004 * 109.46291 * 54.14361 * 24 23 22 46 46 H 1.08992 * 109.50443 * 299.23814 * 25 24 23 47 47 H 1.09008 * 109.53079 * 179.14330 * 25 24 23 48 48 H 1.09001 * 109.52500 * 182.43817 * 26 25 24 49 49 H 1.08999 * 109.57525 * 62.27946 * 26 25 24 50 50 H 1.09005 * 109.50248 * 297.71414 * 27 26 25 51 51 H 1.08998 * 109.50247 * 177.59409 * 27 26 25 52 52 H 1.09000 * 109.46367 * 305.85848 * 28 23 22 53 53 H 1.09000 * 109.45958 * 65.82869 * 28 23 22 54 54 H 1.08991 * 110.37451 * 332.46676 * 29 17 16 55 55 H 1.08998 * 110.37212 * 94.81043 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2906 1.0900 0.0000 4 6 1.8622 2.5349 0.0005 5 6 1.7177 3.0235 1.4432 6 6 1.2899 4.4684 1.4438 7 1 1.1360 4.9864 0.5087 8 6 1.0939 5.1289 2.6381 9 7 1.2808 4.4980 3.7768 10 14 0.5643 6.9203 2.6388 11 1 0.4240 7.3955 1.2389 12 1 -0.7391 7.0509 3.3383 13 1 1.5863 7.7383 3.3397 14 7 3.5162 0.6480 -0.0057 15 7 3.5212 -0.6373 -0.0001 16 6 2.2887 -1.0878 -0.0001 17 7 1.8977 -2.4173 -0.0002 18 6 1.0857 -2.7292 -1.1907 19 6 1.7833 -3.8917 -1.9280 20 6 2.6393 -4.5489 -0.8135 21 1 2.0398 -5.2330 -0.2129 22 6 3.8543 -5.2653 -1.4062 23 7 3.4041 -6.4095 -2.2100 24 6 2.7688 -7.4287 -1.3651 25 6 2.1846 -8.5336 -2.2484 26 6 3.3059 -9.1609 -3.0812 27 6 3.9827 -8.0699 -3.9155 28 6 4.5148 -6.9784 -2.9841 29 6 3.0723 -3.3150 0.0171 30 1 -0.3633 -0.0004 -1.0277 31 1 -0.3633 -0.8898 0.5142 32 1 -0.3633 0.8902 0.5134 33 1 2.6120 3.1364 -0.5134 34 1 0.9054 2.6304 -0.5129 35 1 0.9678 2.4220 1.9571 36 1 2.6743 2.9279 1.9568 37 1 1.1425 4.9626 4.6170 38 1 0.0833 -3.0309 -0.8873 39 1 1.0293 -1.8557 -1.8403 40 1 1.0490 -4.5974 -2.3166 41 1 2.4183 -3.5140 -2.7294 42 1 4.4111 -4.5737 -2.0385 43 1 4.4971 -5.6182 -0.5999 44 1 3.5114 -7.8567 -0.6917 45 1 1.9705 -6.9704 -0.7812 46 1 1.4320 -8.1088 -2.9125 47 1 1.7263 -9.2979 -1.6206 48 1 2.8874 -9.9189 -3.7434 49 1 4.0393 -9.6206 -2.4188 50 1 3.2584 -7.6378 -4.6060 51 1 4.8096 -8.5027 -4.4785 52 1 4.9847 -6.1931 -3.5760 53 1 5.2492 -7.4085 -2.3030 54 1 3.9295 -2.8272 -0.4467 55 1 3.3095 -3.6100 1.0392 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339187276.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:59 Heat of formation + Delta-G solvation = 57.522989 kcal Electronic energy + Delta-G solvation = -30803.224340 eV Core-core repulsion = 26874.997790 eV Total energy + Delta-G solvation = -3928.226550 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.238 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -44.01613 -40.65973 -39.42606 -36.39119 -35.87312 -35.14056 -33.75392 -32.47075 -31.69542 -30.59924 -29.67281 -28.42212 -27.10394 -26.75621 -24.23085 -23.86246 -23.70988 -23.25035 -21.65495 -21.62109 -20.79791 -20.49160 -18.64653 -18.13659 -17.82200 -17.25081 -17.05328 -16.53686 -16.35786 -15.84290 -15.44877 -15.37338 -15.28063 -14.95064 -14.70613 -14.46616 -14.33145 -14.32678 -14.23318 -14.08304 -13.81858 -13.74903 -13.33028 -13.12038 -12.92111 -12.88957 -12.70220 -12.56473 -12.42314 -12.18213 -12.07889 -12.07147 -11.94100 -11.81202 -11.68551 -11.52240 -11.45666 -11.27273 -11.22927 -11.13167 -11.06887 -10.62514 -10.58173 -9.27612 -9.23716 -8.20320 -6.32999 0.77779 1.27632 1.43029 1.44525 1.57469 1.79410 2.42189 2.65503 2.86151 3.13964 3.40737 3.58656 3.63698 3.75513 3.78963 3.93225 4.02365 4.04142 4.08447 4.17534 4.28275 4.30036 4.31980 4.39534 4.44844 4.50475 4.56453 4.58745 4.63782 4.65147 4.66784 4.71601 4.72782 4.81115 4.87190 4.88878 4.93801 4.94902 4.98525 5.06859 5.09306 5.11271 5.14568 5.27152 5.33038 5.35092 5.44202 5.48382 5.51315 5.57591 5.62094 5.78588 6.12156 6.14750 6.18533 6.20542 6.83457 7.37272 7.75164 8.91963 Molecular weight = 347.24amu Principal moments of inertia in cm(-1) A = 0.036462 B = 0.001694 C = 0.001678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.739229 B =16523.838567 C =16681.001147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.480 5.480 3 C 0.194 3.806 4 C -0.013 4.013 5 C 0.042 3.958 6 C -0.538 4.538 7 H 0.074 0.926 8 C -0.001 4.001 9 N -0.935 5.935 10 Si 0.970 3.030 11 H -0.255 1.255 12 H -0.278 1.278 13 H -0.284 1.284 14 N -0.333 5.333 15 N -0.362 5.362 16 C 0.348 3.652 17 N -0.442 5.442 18 C 0.039 3.961 19 C -0.107 4.107 20 C -0.076 4.076 21 H 0.100 0.900 22 C 0.071 3.929 23 N -0.536 5.536 24 C 0.050 3.950 25 C -0.114 4.114 26 C -0.122 4.122 27 C -0.113 4.113 28 C 0.053 3.947 29 C 0.057 3.943 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.098 0.902 35 H -0.006 1.006 36 H -0.019 1.019 37 H 0.263 0.737 38 H 0.113 0.887 39 H 0.050 0.950 40 H 0.103 0.897 41 H 0.061 0.939 42 H 0.069 0.931 43 H 0.037 0.963 44 H 0.027 0.973 45 H 0.082 0.918 46 H 0.068 0.932 47 H 0.074 0.926 48 H 0.070 0.930 49 H 0.056 0.944 50 H 0.066 0.934 51 H 0.073 0.927 52 H 0.071 0.929 53 H 0.029 0.971 54 H 0.060 0.940 55 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.869 -29.241 -16.068 33.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.175 5.175 3 C -0.075 4.075 4 C -0.053 4.053 5 C 0.003 3.997 6 C -0.576 4.576 7 H 0.092 0.908 8 C -0.199 4.199 9 N -0.575 5.575 10 Si 0.795 3.205 11 H -0.179 1.179 12 H -0.203 1.203 13 H -0.210 1.210 14 N -0.171 5.171 15 N -0.206 5.206 16 C -0.009 4.009 17 N -0.166 5.166 18 C -0.087 4.087 19 C -0.145 4.145 20 C -0.096 4.096 21 H 0.118 0.882 22 C -0.057 4.057 23 N -0.261 5.261 24 C -0.077 4.077 25 C -0.152 4.152 26 C -0.159 4.159 27 C -0.151 4.151 28 C -0.075 4.075 29 C -0.070 4.070 30 H 0.125 0.875 31 H 0.125 0.875 32 H 0.108 0.892 33 H 0.106 0.894 34 H 0.116 0.884 35 H 0.013 0.987 36 H -0.001 1.001 37 H 0.072 0.928 38 H 0.131 0.869 39 H 0.069 0.931 40 H 0.121 0.879 41 H 0.079 0.921 42 H 0.088 0.912 43 H 0.055 0.945 44 H 0.045 0.955 45 H 0.100 0.900 46 H 0.086 0.914 47 H 0.093 0.907 48 H 0.089 0.911 49 H 0.075 0.925 50 H 0.085 0.915 51 H 0.092 0.908 52 H 0.090 0.910 53 H 0.047 0.953 54 H 0.078 0.922 55 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.047 -29.159 -15.803 33.229 hybrid contribution -0.144 0.961 0.827 1.276 sum -2.191 -28.198 -14.976 32.003 Atomic orbital electron populations 1.22395 0.73054 1.06142 1.05540 1.46211 1.10019 1.04800 1.56432 1.25321 0.86452 0.92879 1.02886 1.20119 1.02262 0.83008 0.99871 1.18849 0.94699 0.95573 0.90536 1.21633 1.45869 0.96854 0.93248 0.90814 1.26024 0.95359 1.03352 0.95122 1.70142 1.50362 1.38882 0.98139 0.85318 0.77653 0.78675 0.78904 1.17883 1.20340 1.20991 1.73864 1.19243 1.03241 1.20754 1.74322 1.17573 1.03478 1.25229 1.22975 0.86586 0.88715 1.02637 1.60473 1.20999 0.95160 1.40012 1.23204 0.98531 0.98892 0.88078 1.22588 0.99230 0.95891 0.96784 1.22220 0.96789 0.94737 0.95816 0.88178 1.21909 0.95206 0.92749 0.95870 1.61909 1.29628 1.08176 1.26372 1.22207 0.98462 0.92528 0.94549 1.21565 0.98059 0.96957 0.98586 1.21586 0.97892 0.97715 0.98745 1.21558 1.00614 0.95309 0.97621 1.22119 0.91696 0.97502 0.96156 1.23079 0.90460 0.91510 1.01949 0.87530 0.87459 0.89204 0.89414 0.88397 0.98727 1.00098 0.92829 0.86911 0.93086 0.87873 0.92054 0.91211 0.94471 0.95464 0.89985 0.91359 0.90729 0.91114 0.92529 0.91512 0.90844 0.91009 0.95308 0.92159 0.89670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.65 9.89 127.77 1.26 2.91 16 2 N -0.48 -16.33 3.16 -538.17 -1.70 -18.03 16 3 C 0.19 8.06 7.32 137.64 1.01 9.06 16 4 C -0.01 -0.54 5.36 29.85 0.16 -0.38 16 5 C 0.04 2.22 4.95 29.85 0.15 2.37 16 6 C -0.54 -29.75 9.11 25.60 0.23 -29.52 16 7 H 0.07 3.78 7.74 -2.91 -0.02 3.76 16 8 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 9 N -0.94 -57.25 13.29 21.45 0.28 -56.97 16 10 Si 0.97 43.50 29.54 68.60 2.03 45.53 16 11 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 12 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 13 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 14 N -0.33 -15.37 12.18 -49.54 -0.60 -15.97 16 15 N -0.36 -15.16 10.72 -58.00 -0.62 -15.78 16 16 C 0.35 12.00 6.86 260.11 1.78 13.78 16 17 N -0.44 -11.25 5.22 -695.89 -3.63 -14.89 16 18 C 0.04 0.70 6.04 86.65 0.52 1.22 16 19 C -0.11 -1.57 6.24 31.78 0.20 -1.37 16 20 C -0.08 -1.16 2.90 -9.41 -0.03 -1.19 16 21 H 0.10 1.32 6.41 -2.38 -0.02 1.31 16 22 C 0.07 1.05 4.41 86.30 0.38 1.43 16 23 N -0.54 -7.03 4.48 -896.35 -4.01 -11.04 16 24 C 0.05 0.57 5.30 86.33 0.46 1.02 16 25 C -0.11 -1.06 6.09 30.65 0.19 -0.88 16 26 C -0.12 -1.10 6.00 30.67 0.18 -0.92 16 27 C -0.11 -1.14 6.09 30.65 0.19 -0.95 16 28 C 0.05 0.66 5.46 86.32 0.47 1.13 16 29 C 0.06 1.31 5.96 86.77 0.52 1.83 16 30 H 0.11 1.81 8.14 -2.38 -0.02 1.79 16 31 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.09 2.34 7.88 -2.39 -0.02 2.32 16 33 H 0.09 3.64 8.14 -2.39 -0.02 3.62 16 34 H 0.10 3.46 7.92 -2.39 -0.02 3.44 16 35 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 36 H -0.02 -1.20 8.14 -2.39 -0.02 -1.21 16 37 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 38 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.05 1.03 7.28 -2.39 -0.02 1.01 16 40 H 0.10 1.18 8.14 -2.38 -0.02 1.16 16 41 H 0.06 1.06 8.01 -2.39 -0.02 1.04 16 42 H 0.07 1.17 7.95 -2.39 -0.02 1.15 16 43 H 0.04 0.57 8.12 -2.39 -0.02 0.55 16 44 H 0.03 0.34 8.14 -2.39 -0.02 0.32 16 45 H 0.08 0.86 6.19 -2.39 -0.01 0.85 16 46 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 47 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 48 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 49 H 0.06 0.53 8.14 -2.39 -0.02 0.52 16 50 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 51 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 52 H 0.07 0.92 8.02 -2.39 -0.02 0.90 16 53 H 0.03 0.37 8.14 -2.39 -0.02 0.36 16 54 H 0.06 1.67 6.80 -2.39 -0.02 1.65 16 55 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -74.12 424.26 0.71 -73.40 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: 0.84 Total: 13.78 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: 8.14 Total: -0.03 kcal Atomic # 7 Polarization: -122.40 SS G_CDS: -10.29 Total: -132.69 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -74.12 0.71 -73.40 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339187276.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.927 kcal (2) G-P(sol) polarization free energy of solvation -74.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds