Wall clock time and date at job start Wed Apr 1 2020 05:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36750 * 127.13246 * 2 1 4 4 C 1.50696 * 126.34637 * 0.05344 * 3 2 1 5 5 C 1.53004 * 109.46896 * 90.00542 * 4 3 2 6 6 C 1.50701 * 109.46822 * 179.97438 * 5 4 3 7 7 H 1.07999 * 120.00595 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99964 * 179.97438 * 6 5 4 9 9 N 1.31518 * 119.99855 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00217 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47241 * 60.00094 * 10 8 6 12 12 H 1.48504 * 109.47146 * 180.02562 * 10 8 6 13 13 H 1.48505 * 109.47167 * 300.00104 * 10 8 6 14 14 N 1.30297 * 107.30163 * 180.02562 * 3 2 1 15 15 N 1.28532 * 110.05614 * 359.72906 * 14 3 2 16 16 C 1.31214 * 109.85602 * 0.44826 * 15 14 3 17 17 N 1.38585 * 126.47012 * 179.82133 * 16 15 14 18 18 C 1.47882 * 111.01808 * 238.81110 * 17 16 15 19 19 C 1.54908 * 104.77621 * 146.32853 * 18 17 16 20 20 C 1.55145 * 101.68628 * 322.98418 * 19 18 17 21 21 H 1.08998 * 110.70772 * 277.24798 * 20 19 18 22 22 C 1.53005 * 110.70403 * 154.01626 * 20 19 18 23 23 N 1.46895 * 109.47285 * 64.36922 * 22 20 19 24 24 C 1.46851 * 110.99835 * 199.87244 * 23 22 20 25 25 C 1.53042 * 109.52104 * 174.16253 * 24 23 22 26 26 C 1.53115 * 109.27716 * 59.17649 * 25 24 23 27 27 C 1.53113 * 109.16417 * 302.34611 * 26 25 24 28 28 C 1.46854 * 110.99985 * 75.66352 * 23 22 20 29 29 C 1.47441 * 110.99608 * 359.69131 * 17 16 15 30 30 H 1.09005 * 109.47113 * 269.97389 * 1 2 3 31 31 H 1.08992 * 109.47464 * 29.97537 * 1 2 3 32 32 H 1.09000 * 109.46582 * 149.97960 * 1 2 3 33 33 H 1.08998 * 109.47314 * 209.99831 * 4 3 2 34 34 H 1.08998 * 109.47298 * 330.00539 * 4 3 2 35 35 H 1.09003 * 109.47156 * 299.99364 * 5 4 3 36 36 H 1.08998 * 109.47149 * 59.99906 * 5 4 3 37 37 H 0.97000 * 120.00294 * 179.97438 * 9 8 6 38 38 H 1.09004 * 110.35285 * 27.52554 * 18 17 16 39 39 H 1.08992 * 110.41216 * 265.16736 * 18 17 16 40 40 H 1.08996 * 110.99424 * 204.87454 * 19 18 17 41 41 H 1.09005 * 110.99068 * 81.08841 * 19 18 17 42 42 H 1.09003 * 109.46537 * 184.37018 * 22 20 19 43 43 H 1.09007 * 109.46662 * 304.36552 * 22 20 19 44 44 H 1.09000 * 109.46207 * 294.17659 * 24 23 22 45 45 H 1.08999 * 109.45909 * 54.14398 * 24 23 22 46 46 H 1.09000 * 109.49973 * 299.23730 * 25 24 23 47 47 H 1.08997 * 109.53178 * 179.14311 * 25 24 23 48 48 H 1.09010 * 109.52053 * 182.43689 * 26 25 24 49 49 H 1.09004 * 109.52403 * 62.25714 * 26 25 24 50 50 H 1.09000 * 109.50258 * 297.71175 * 27 26 25 51 51 H 1.09003 * 109.53919 * 177.61807 * 27 26 25 52 52 H 1.09004 * 109.46032 * 305.85342 * 28 23 22 53 53 H 1.08998 * 109.45954 * 65.82109 * 28 23 22 54 54 H 1.09010 * 109.88596 * 117.33700 * 29 17 16 55 55 H 1.08999 * 109.89087 * 356.14675 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2905 1.0902 0.0000 4 6 1.8619 2.5350 0.0011 5 6 1.7181 3.0231 1.4441 6 6 1.2902 4.4681 1.4452 7 1 1.1358 4.9863 0.5103 8 6 1.0947 5.1283 2.6398 9 7 1.2823 4.4971 3.7782 10 14 0.5636 6.9191 2.6412 11 1 -0.7399 7.0494 1.9419 12 1 0.4241 7.3929 4.0417 13 1 1.5850 7.7389 1.9412 14 7 3.5162 0.6482 -0.0006 15 7 3.5212 -0.6371 0.0048 16 6 2.2889 -1.0877 -0.0006 17 7 1.8979 -2.4172 -0.0008 18 6 1.0681 -2.7258 -1.1853 19 6 1.4220 -4.1904 -1.5449 20 6 2.9414 -4.2319 -1.2342 21 1 3.5170 -3.8367 -2.0712 22 6 3.3855 -5.6563 -0.8951 23 7 3.2071 -6.5179 -2.0714 24 6 3.1628 -7.9339 -1.6846 25 6 2.8317 -8.7887 -2.9102 26 6 3.8998 -8.5669 -3.9846 27 6 3.9590 -7.0774 -4.3345 28 6 4.2575 -6.2723 -3.0679 29 6 3.0694 -3.3124 -0.0015 30 1 -0.3633 -0.0005 1.0277 31 1 -0.3634 0.8901 -0.5134 32 1 -0.3632 -0.8898 -0.5142 33 1 2.6114 3.1367 -0.5129 34 1 0.9050 2.6305 -0.5118 35 1 0.9685 2.4214 1.9582 36 1 2.6751 2.9275 1.9570 37 1 1.1451 4.9616 4.6187 38 1 1.3227 -2.0604 -2.0103 39 1 0.0094 -2.6404 -0.9405 40 1 1.2336 -4.3900 -2.5998 41 1 0.8751 -4.8906 -0.9134 42 1 4.4363 -5.6499 -0.6054 43 1 2.7835 -6.0379 -0.0704 44 1 4.1322 -8.2318 -1.2852 45 1 2.3964 -8.0785 -0.9231 46 1 1.8561 -8.5006 -3.3019 47 1 2.8137 -9.8409 -2.6265 48 1 3.6447 -9.1406 -4.8757 49 1 4.8694 -8.8912 -3.6068 50 1 3.0012 -6.7626 -4.7487 51 1 4.7467 -6.9064 -5.0684 52 1 4.2862 -5.2101 -3.3110 53 1 5.2218 -6.5780 -2.6619 54 1 3.0786 -3.9118 0.9089 55 1 3.9850 -2.7249 -0.0706 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339187281.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:02 Heat of formation + Delta-G solvation = 59.308107 kcal Electronic energy + Delta-G solvation = -30802.565898 eV Core-core repulsion = 26874.416756 eV Total energy + Delta-G solvation = -3928.149142 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.238 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -44.02364 -40.63616 -39.43437 -36.39420 -35.87768 -35.13526 -33.74969 -32.46978 -31.71596 -30.65682 -29.65352 -28.43089 -27.09187 -26.71467 -24.18509 -23.87934 -23.68156 -23.23018 -21.80680 -21.57516 -20.81146 -20.54202 -18.68557 -18.42064 -17.42432 -17.18645 -17.09793 -16.50005 -16.30970 -16.04758 -15.40900 -15.31410 -15.14306 -15.04821 -14.83286 -14.49431 -14.36636 -14.32524 -14.12172 -14.04733 -13.85597 -13.80827 -13.22958 -13.15426 -12.94045 -12.84447 -12.78315 -12.54471 -12.44001 -12.12177 -12.06318 -12.02375 -11.92932 -11.82326 -11.65452 -11.51132 -11.47042 -11.30683 -11.23184 -11.10905 -11.08471 -10.68417 -10.56129 -9.26295 -9.22969 -8.19528 -6.32515 0.77591 1.27457 1.43763 1.47330 1.54879 1.78576 2.42698 2.67723 2.84896 3.14442 3.40372 3.59236 3.63072 3.74385 3.79105 3.92787 3.99936 4.03049 4.10023 4.19025 4.22249 4.28316 4.32025 4.35432 4.44579 4.48934 4.55707 4.59351 4.62911 4.67071 4.70191 4.72761 4.74290 4.81117 4.88900 4.91900 4.92354 4.97455 4.98145 5.06849 5.09321 5.12004 5.18589 5.26361 5.32259 5.33615 5.43971 5.48508 5.50561 5.58557 5.62863 5.78579 6.13365 6.14630 6.18971 6.19883 6.83420 7.37614 7.74689 8.92309 Molecular weight = 347.24amu Principal moments of inertia in cm(-1) A = 0.035325 B = 0.001697 C = 0.001690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.445967 B =16491.952881 C =16567.726321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.480 5.480 3 C 0.194 3.806 4 C -0.013 4.013 5 C 0.043 3.957 6 C -0.540 4.540 7 H 0.074 0.926 8 C 0.000 4.000 9 N -0.935 5.935 10 Si 0.970 3.030 11 H -0.260 1.260 12 H -0.288 1.288 13 H -0.268 1.268 14 N -0.332 5.332 15 N -0.363 5.363 16 C 0.349 3.651 17 N -0.441 5.441 18 C 0.035 3.965 19 C -0.089 4.089 20 C -0.089 4.089 21 H 0.067 0.933 22 C 0.073 3.927 23 N -0.536 5.536 24 C 0.054 3.946 25 C -0.113 4.113 26 C -0.121 4.121 27 C -0.114 4.114 28 C 0.053 3.947 29 C 0.049 3.951 30 H 0.078 0.922 31 H 0.105 0.895 32 H 0.117 0.883 33 H 0.088 0.912 34 H 0.099 0.901 35 H -0.006 1.006 36 H -0.020 1.020 37 H 0.263 0.737 38 H 0.044 0.956 39 H 0.110 0.890 40 H 0.093 0.907 41 H 0.091 0.909 42 H 0.034 0.966 43 H 0.088 0.912 44 H 0.027 0.973 45 H 0.081 0.919 46 H 0.068 0.932 47 H 0.075 0.925 48 H 0.070 0.930 49 H 0.055 0.945 50 H 0.067 0.933 51 H 0.069 0.931 52 H 0.068 0.932 53 H 0.026 0.974 54 H 0.096 0.904 55 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.736 -29.058 -16.612 33.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.174 5.174 3 C -0.076 4.076 4 C -0.053 4.053 5 C 0.004 3.996 6 C -0.578 4.578 7 H 0.092 0.908 8 C -0.198 4.198 9 N -0.575 5.575 10 Si 0.794 3.206 11 H -0.184 1.184 12 H -0.214 1.214 13 H -0.193 1.193 14 N -0.171 5.171 15 N -0.207 5.207 16 C -0.009 4.009 17 N -0.165 5.165 18 C -0.091 4.091 19 C -0.127 4.127 20 C -0.109 4.109 21 H 0.086 0.914 22 C -0.055 4.055 23 N -0.260 5.260 24 C -0.073 4.073 25 C -0.151 4.151 26 C -0.159 4.159 27 C -0.152 4.152 28 C -0.075 4.075 29 C -0.078 4.078 30 H 0.097 0.903 31 H 0.124 0.876 32 H 0.136 0.864 33 H 0.106 0.894 34 H 0.117 0.883 35 H 0.012 0.988 36 H -0.002 1.002 37 H 0.072 0.928 38 H 0.062 0.938 39 H 0.128 0.872 40 H 0.111 0.889 41 H 0.110 0.890 42 H 0.052 0.948 43 H 0.106 0.894 44 H 0.046 0.954 45 H 0.100 0.900 46 H 0.087 0.913 47 H 0.094 0.906 48 H 0.089 0.911 49 H 0.074 0.926 50 H 0.086 0.914 51 H 0.088 0.912 52 H 0.086 0.914 53 H 0.045 0.955 54 H 0.114 0.886 55 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.001 -29.036 -16.201 33.310 hybrid contribution 0.062 1.078 0.578 1.225 sum -1.939 -27.958 -15.622 32.085 Atomic orbital electron populations 1.22451 0.73107 1.06686 1.04969 1.46185 1.09993 1.04819 1.56420 1.25332 0.86427 0.92886 1.02929 1.20128 1.02268 0.82981 0.99878 1.18835 0.94648 0.95559 0.90535 1.21575 1.46117 0.96867 0.93260 0.90790 1.26029 0.95328 1.03375 0.95100 1.70129 1.50246 1.39000 0.98121 0.85421 0.79389 0.78706 0.77040 1.18427 1.21360 1.19265 1.73861 1.19251 1.03225 1.20733 1.74272 1.17521 1.03465 1.25456 1.22997 0.86616 0.88774 1.02516 1.60514 1.20289 0.95090 1.40636 1.23463 0.98582 0.98661 0.88388 1.22531 0.93941 0.92963 1.03224 1.22212 0.97897 0.94705 0.96088 0.91409 1.21965 0.99520 0.91319 0.92713 1.61875 1.46996 1.05346 1.11827 1.22154 1.00164 0.87035 0.97989 1.21564 0.99369 0.99265 0.94919 1.21583 0.98997 0.96077 0.99240 1.21558 1.02283 0.95099 0.96258 1.22137 0.91974 1.00215 0.93196 1.22952 0.90909 0.93625 1.00308 0.90311 0.87635 0.86443 0.89402 0.88321 0.98795 1.00154 0.92832 0.93772 0.87216 0.88864 0.89006 0.94804 0.89384 0.95431 0.90023 0.91343 0.90604 0.91115 0.92583 0.91420 0.91205 0.91404 0.95546 0.88566 0.91527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.65 10.94 127.77 1.40 3.05 16 2 N -0.48 -16.44 3.21 -538.19 -1.73 -18.17 16 3 C 0.19 8.07 7.32 137.63 1.01 9.08 16 4 C -0.01 -0.54 5.53 29.85 0.16 -0.37 16 5 C 0.04 2.27 4.96 29.85 0.15 2.42 16 6 C -0.54 -29.92 9.11 25.60 0.23 -29.69 16 7 H 0.07 3.78 7.74 -2.91 -0.02 3.76 16 8 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 9 N -0.94 -57.38 13.29 21.45 0.28 -57.10 16 10 Si 0.97 43.49 29.54 68.60 2.03 45.51 16 11 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 12 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 13 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 14 N -0.33 -15.42 12.18 -49.53 -0.60 -16.02 16 15 N -0.36 -15.28 10.47 -58.01 -0.61 -15.89 16 16 C 0.35 12.10 6.98 260.11 1.82 13.91 16 17 N -0.44 -11.34 5.22 -695.80 -3.63 -14.97 16 18 C 0.03 0.63 5.51 86.77 0.48 1.11 16 19 C -0.09 -1.21 6.30 31.98 0.20 -1.01 16 20 C -0.09 -1.47 2.97 -9.61 -0.03 -1.50 16 21 H 0.07 1.30 6.88 -2.39 -0.02 1.28 16 22 C 0.07 1.00 4.30 86.31 0.37 1.37 16 23 N -0.54 -6.83 4.35 -896.32 -3.90 -10.72 16 24 C 0.05 0.58 5.43 86.33 0.47 1.05 16 25 C -0.11 -1.03 6.09 30.65 0.19 -0.84 16 26 C -0.12 -1.14 6.00 30.67 0.18 -0.95 16 27 C -0.11 -1.25 6.09 30.64 0.19 -1.06 16 28 C 0.05 0.70 5.29 86.32 0.46 1.16 16 29 C 0.05 1.14 6.42 86.65 0.56 1.69 16 30 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 31 H 0.11 2.24 7.25 -2.39 -0.02 2.22 16 32 H 0.12 1.94 5.43 -2.39 -0.01 1.93 16 33 H 0.09 3.64 8.14 -2.39 -0.02 3.62 16 34 H 0.10 3.47 7.27 -2.39 -0.02 3.45 16 35 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 36 H -0.02 -1.23 8.14 -2.39 -0.02 -1.25 16 37 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 38 H 0.04 0.91 7.79 -2.39 -0.02 0.89 16 39 H 0.11 1.51 6.68 -2.39 -0.02 1.50 16 40 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.09 1.10 8.04 -2.38 -0.02 1.08 16 42 H 0.03 0.51 8.00 -2.39 -0.02 0.49 16 43 H 0.09 1.06 7.79 -2.38 -0.02 1.04 16 44 H 0.03 0.32 8.14 -2.39 -0.02 0.30 16 45 H 0.08 0.77 7.93 -2.39 -0.02 0.75 16 46 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 47 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 48 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 49 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 50 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 51 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 52 H 0.07 1.00 6.74 -2.39 -0.02 0.99 16 53 H 0.03 0.38 8.14 -2.39 -0.02 0.36 16 54 H 0.10 2.00 7.82 -2.38 -0.02 1.98 16 55 H 0.07 1.96 6.32 -2.39 -0.02 1.94 16 Total: -1.00 -74.49 420.11 0.99 -73.50 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: 0.85 Total: 14.03 kcal Atomic # 6 Polarization: -8.45 SS G_CDS: 8.29 Total: -0.16 kcal Atomic # 7 Polarization: -122.70 SS G_CDS: -10.18 Total: -132.88 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.51 kcal Total: -74.49 0.99 -73.50 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339187281.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.810 kcal (2) G-P(sol) polarization free energy of solvation -74.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds