Wall clock time and date at job start Wed Apr 1 2020 05:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46495 * 109.47440 * 2 1 4 4 C 1.36743 * 127.13483 * 91.41409 * 3 2 1 5 5 C 1.50700 * 126.34396 * 359.94379 * 4 3 2 6 6 C 1.52995 * 109.47547 * 90.00209 * 5 4 3 7 7 C 1.50691 * 109.47609 * 179.97438 * 6 5 4 8 8 H 1.08009 * 120.00338 * 359.97438 * 7 6 5 9 9 C 1.37879 * 120.00537 * 180.02562 * 7 6 5 10 10 N 1.31513 * 120.00537 * 179.97438 * 9 7 6 11 11 Si 1.86802 * 119.99651 * 359.97438 * 9 7 6 12 12 H 1.48497 * 109.46956 * 90.00144 * 11 9 7 13 13 H 1.48505 * 109.47224 * 210.00234 * 11 9 7 14 14 H 1.48500 * 109.47167 * 330.00356 * 11 9 7 15 15 N 1.30289 * 107.30921 * 179.97438 * 4 3 2 16 16 N 1.28534 * 110.05183 * 359.97438 * 15 4 3 17 17 C 1.31228 * 109.85685 * 359.74410 * 16 15 4 18 18 N 1.38576 * 126.46980 * 180.25887 * 17 16 15 19 19 C 1.46953 * 111.00286 * 63.10823 * 18 17 16 20 20 C 1.53050 * 109.36312 * 176.80862 * 19 18 17 21 21 N 1.46956 * 109.36512 * 58.40879 * 20 19 18 22 22 C 1.46902 * 110.99918 * 176.81223 * 21 20 19 23 23 C 1.54260 * 110.03549 * 60.96134 * 22 21 20 24 24 C 1.54889 * 104.19568 * 217.10500 * 23 22 21 25 25 C 1.54888 * 102.74808 * 37.94085 * 24 23 22 26 26 C 1.53874 * 110.03221 * 303.79027 * 22 21 20 27 27 C 1.46955 * 110.87631 * 300.67090 * 21 20 19 28 28 C 1.46964 * 110.99964 * 299.30715 * 18 17 16 29 29 H 1.09003 * 109.47560 * 179.97438 * 1 2 3 30 30 H 1.09010 * 109.46935 * 59.99383 * 1 2 3 31 31 H 1.09007 * 109.47030 * 300.00120 * 1 2 3 32 32 H 1.09004 * 109.46676 * 120.00986 * 2 1 3 33 33 H 1.09007 * 109.47030 * 239.99879 * 2 1 3 34 34 H 1.09002 * 109.46613 * 209.99937 * 5 4 3 35 35 H 1.08997 * 109.47606 * 329.99538 * 5 4 3 36 36 H 1.09002 * 109.46864 * 300.00078 * 6 5 4 37 37 H 1.09003 * 109.47423 * 59.99435 * 6 5 4 38 38 H 0.96995 * 120.00357 * 179.97438 * 10 9 7 39 39 H 1.08997 * 109.49379 * 296.78055 * 19 18 17 40 40 H 1.08999 * 109.48716 * 56.84646 * 19 18 17 41 41 H 1.09004 * 109.49347 * 298.43570 * 20 19 18 42 42 H 1.09008 * 109.49044 * 178.37151 * 20 19 18 43 43 H 1.09009 * 110.01365 * 182.40272 * 22 21 20 44 44 H 1.09001 * 110.48853 * 335.78569 * 23 22 21 45 45 H 1.09006 * 110.48914 * 98.42501 * 23 22 21 46 46 H 1.08996 * 110.75697 * 279.62611 * 24 23 22 47 47 H 1.09005 * 110.75540 * 156.25550 * 24 23 22 48 48 H 1.08997 * 110.48617 * 203.37896 * 25 24 23 49 49 H 1.09002 * 110.48166 * 80.73736 * 25 24 23 50 50 H 1.08995 * 110.03774 * 238.57317 * 26 22 21 51 51 H 1.09000 * 110.02931 * 359.95729 * 26 22 21 52 52 H 1.08991 * 109.49550 * 299.35923 * 27 21 20 53 53 H 1.08999 * 109.48881 * 179.28656 * 27 21 20 54 54 H 1.08995 * 109.49059 * 303.16115 * 28 18 17 55 55 H 1.08998 * 109.48598 * 63.20208 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3190 2.1505 1.0898 5 6 2.2086 1.7349 2.5342 6 6 3.5304 1.1125 2.9883 7 6 3.4202 0.6976 4.4328 8 1 2.4996 0.8618 4.9732 9 6 4.4950 0.1093 5.0651 10 7 4.3990 -0.2524 6.3259 11 14 6.0876 -0.1741 4.1308 12 1 6.9670 1.0131 4.2802 13 1 6.7755 -1.3716 4.6768 14 1 5.7863 -0.3890 2.6927 15 7 2.7178 3.3094 0.6480 16 7 2.6904 3.3245 -0.6369 17 6 2.2743 2.1644 -1.0875 18 7 2.1203 1.8042 -2.4168 19 6 3.4098 1.8256 -3.1211 20 6 3.2097 1.3465 -4.5608 21 7 2.2321 2.2146 -5.2318 22 6 2.0687 1.8327 -6.6409 23 6 1.5509 0.3829 -6.7389 24 6 2.2816 -0.1987 -7.9746 25 6 3.6930 0.4296 -7.8642 26 6 3.4306 1.8624 -7.3564 27 6 0.9424 2.1932 -4.5276 28 6 1.1425 2.6724 -3.0877 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5140 -0.8900 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5140 0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 1.9886 2.6086 3.1477 35 1 1.4070 1.0043 2.6419 36 1 3.7503 0.2389 2.3747 37 1 4.3320 1.8432 2.8807 38 1 5.1550 -0.6666 6.7705 39 1 3.8040 2.8417 -3.1275 40 1 4.1128 1.1657 -2.6127 41 1 2.8413 0.3206 -4.5549 42 1 4.1597 1.3889 -5.0937 43 1 1.3732 2.5124 -7.1334 44 1 1.8137 -0.1775 -5.8416 45 1 0.4720 0.3727 -6.8938 46 1 1.7907 0.1139 -8.8962 47 1 2.3368 -1.2857 -7.9146 48 1 4.1774 0.4535 -8.8403 49 1 4.3017 -0.1233 -7.1486 50 1 3.3960 2.5558 -8.1967 51 1 4.2127 2.1610 -6.6583 52 1 0.5483 1.1771 -4.5211 53 1 0.2395 2.8531 -5.0360 54 1 0.1926 2.6299 -2.5550 55 1 1.5107 3.6982 -3.0933 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339513849.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:31 Heat of formation + Delta-G solvation = 65.639715 kcal Electronic energy + Delta-G solvation = -31823.006621 eV Core-core repulsion = 27895.132038 eV Total energy + Delta-G solvation = -3927.874583 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.238 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -44.07748 -41.04443 -38.70396 -36.86051 -36.03707 -35.20884 -33.78424 -32.16385 -31.51929 -30.86315 -29.61148 -29.03258 -27.32496 -26.05580 -25.03119 -24.73177 -23.41195 -22.66021 -21.77000 -21.43741 -20.96255 -19.85923 -19.04533 -18.46976 -17.74305 -17.23775 -16.94490 -16.50211 -16.32842 -15.92061 -15.87235 -15.60849 -15.42022 -15.14541 -14.93072 -14.84088 -14.64403 -14.50442 -14.09910 -13.98474 -13.53256 -13.40126 -13.24678 -12.99714 -12.76979 -12.61946 -12.54084 -12.45356 -12.36041 -12.25106 -12.13864 -12.05662 -11.93479 -11.88935 -11.82407 -11.65715 -11.54694 -11.44575 -11.43990 -11.32370 -11.12655 -10.79552 -10.02872 -9.98765 -9.21227 -8.31451 -6.35343 0.65758 1.20078 1.32221 1.34872 1.44006 1.70848 2.32264 2.58907 2.83588 3.03738 3.38571 3.62064 3.66468 3.68891 3.79586 3.97348 3.99980 4.02062 4.05369 4.12592 4.19472 4.21826 4.32606 4.33452 4.44377 4.49949 4.55411 4.58207 4.60194 4.63527 4.66694 4.68155 4.71070 4.73404 4.81359 4.82302 4.84575 4.88199 4.99610 5.04382 5.09128 5.13239 5.15238 5.24139 5.26041 5.31766 5.38691 5.39031 5.48165 5.48686 5.55824 5.61018 6.06145 6.12760 6.21386 6.22974 6.71521 7.29140 7.65341 8.84422 Molecular weight = 347.24amu Principal moments of inertia in cm(-1) A = 0.016427 B = 0.002374 C = 0.002270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.131149 B =11790.804287 C =12330.625192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.098 3.902 3 N -0.458 5.458 4 C 0.201 3.799 5 C -0.010 4.010 6 C 0.005 3.995 7 C -0.525 4.525 8 H 0.048 0.952 9 C 0.015 3.985 10 N -0.942 5.942 11 Si 0.940 3.060 12 H -0.275 1.275 13 H -0.278 1.278 14 H -0.254 1.254 15 N -0.331 5.331 16 N -0.345 5.345 17 C 0.340 3.660 18 N -0.450 5.450 19 C 0.069 3.931 20 C 0.066 3.934 21 N -0.542 5.542 22 C 0.084 3.916 23 C -0.156 4.156 24 C -0.119 4.119 25 C -0.125 4.125 26 C -0.122 4.122 27 C 0.069 3.931 28 C 0.071 3.929 29 H 0.104 0.896 30 H 0.062 0.938 31 H 0.052 0.948 32 H 0.097 0.903 33 H 0.113 0.887 34 H 0.087 0.913 35 H 0.095 0.905 36 H 0.020 0.980 37 H 0.007 0.993 38 H 0.268 0.732 39 H 0.041 0.959 40 H 0.074 0.926 41 H 0.054 0.946 42 H 0.097 0.903 43 H 0.090 0.910 44 H 0.064 0.936 45 H 0.070 0.930 46 H 0.073 0.927 47 H 0.066 0.934 48 H 0.071 0.929 49 H 0.061 0.939 50 H 0.072 0.928 51 H 0.067 0.933 52 H 0.054 0.946 53 H 0.099 0.901 54 H 0.081 0.919 55 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.344 -2.641 -33.271 34.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.023 4.023 3 N -0.150 5.150 4 C -0.068 4.068 5 C -0.050 4.050 6 C -0.033 4.033 7 C -0.563 4.563 8 H 0.067 0.933 9 C -0.183 4.183 10 N -0.582 5.582 11 Si 0.764 3.236 12 H -0.201 1.201 13 H -0.204 1.204 14 H -0.178 1.178 15 N -0.171 5.171 16 N -0.188 5.188 17 C -0.017 4.017 18 N -0.177 5.177 19 C -0.059 4.059 20 C -0.062 4.062 21 N -0.266 5.266 22 C -0.024 4.024 23 C -0.195 4.195 24 C -0.157 4.157 25 C -0.163 4.163 26 C -0.159 4.159 27 C -0.059 4.059 28 C -0.056 4.056 29 H 0.123 0.877 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.115 0.885 33 H 0.131 0.869 34 H 0.106 0.894 35 H 0.114 0.886 36 H 0.039 0.961 37 H 0.025 0.975 38 H 0.077 0.923 39 H 0.059 0.941 40 H 0.092 0.908 41 H 0.072 0.928 42 H 0.115 0.885 43 H 0.109 0.891 44 H 0.083 0.917 45 H 0.088 0.912 46 H 0.091 0.909 47 H 0.085 0.915 48 H 0.090 0.910 49 H 0.080 0.920 50 H 0.091 0.909 51 H 0.086 0.914 52 H 0.072 0.928 53 H 0.118 0.882 54 H 0.099 0.901 55 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -7.778 -1.307 -33.143 34.068 hybrid contribution 0.458 -1.228 0.559 1.425 sum -7.321 -2.536 -32.584 33.492 Atomic orbital electron populations 1.22052 0.92084 1.04734 1.02366 1.22186 0.97227 0.77055 1.05819 1.46621 1.48585 1.14806 1.05023 1.25286 1.00232 0.88462 0.92784 1.19968 1.00101 1.01806 0.83142 1.19374 0.93529 0.95352 0.95084 1.21278 1.00039 1.39254 0.95771 0.93344 1.25799 1.02118 0.94888 0.95481 1.70020 1.32929 1.43084 1.12216 0.85824 0.79812 0.78069 0.79893 1.20050 1.20365 1.17833 1.73968 1.20523 1.19339 1.03283 1.74448 1.21011 1.19599 1.03787 1.22493 1.02435 0.87638 0.89179 1.59065 1.11930 1.52347 0.94351 1.22251 0.88185 1.00948 0.94503 1.22143 0.97769 0.95269 0.91008 1.62406 1.09112 1.52519 1.02544 1.22432 0.97769 0.95108 0.87133 1.23025 1.00575 0.96882 0.98977 1.22421 0.95477 0.99957 0.97871 1.22381 0.97230 0.95352 1.01311 1.22265 0.96325 0.97493 0.99862 1.22088 0.91458 1.01287 0.91078 1.22243 0.94335 0.94268 0.94740 0.87738 0.91902 0.92930 0.88468 0.86855 0.89419 0.88645 0.96127 0.97451 0.92343 0.94075 0.90775 0.92775 0.88457 0.89146 0.91741 0.91162 0.90862 0.91536 0.90980 0.92029 0.90877 0.91411 0.92774 0.88233 0.90091 0.94052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.78 10.24 71.98 0.74 -2.04 16 2 C 0.10 2.23 6.62 86.38 0.57 2.80 16 3 N -0.46 -14.24 2.81 -514.86 -1.45 -15.68 16 4 C 0.20 7.62 7.32 137.64 1.01 8.62 16 5 C -0.01 -0.41 5.35 29.85 0.16 -0.25 16 6 C 0.01 0.24 4.02 29.84 0.12 0.36 16 7 C -0.53 -29.24 9.66 25.60 0.25 -29.00 16 8 H 0.05 2.89 7.99 -2.91 -0.02 2.87 16 9 C 0.02 0.87 5.47 84.66 0.46 1.33 16 10 N -0.94 -57.71 13.96 21.45 0.30 -57.41 16 11 Si 0.94 44.48 27.47 68.60 1.88 46.37 16 12 H -0.27 -12.97 7.11 99.48 0.71 -12.26 16 13 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 14 H -0.25 -11.35 6.54 99.48 0.65 -10.70 16 15 N -0.33 -14.07 12.18 -49.54 -0.60 -14.67 16 16 N -0.34 -13.41 12.19 -58.01 -0.71 -14.12 16 17 C 0.34 10.69 6.45 260.11 1.68 12.37 16 18 N -0.45 -10.63 4.73 -705.54 -3.33 -13.96 16 19 C 0.07 1.52 5.54 86.31 0.48 2.00 16 20 C 0.07 1.04 4.94 86.31 0.43 1.46 16 21 N -0.54 -8.03 4.71 -866.22 -4.08 -12.11 16 22 C 0.08 0.93 3.06 45.64 0.14 1.07 16 23 C -0.16 -1.52 5.12 31.67 0.16 -1.35 16 24 C -0.12 -1.01 6.91 31.88 0.22 -0.79 16 25 C -0.13 -1.13 6.83 31.67 0.22 -0.91 16 26 C -0.12 -1.28 5.91 31.32 0.19 -1.10 16 27 C 0.07 0.98 5.32 86.31 0.46 1.44 16 28 C 0.07 1.46 5.52 86.31 0.48 1.94 16 29 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 31 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 32 H 0.10 2.34 7.80 -2.38 -0.02 2.32 16 33 H 0.11 2.16 8.14 -2.38 -0.02 2.14 16 34 H 0.09 3.53 8.14 -2.39 -0.02 3.51 16 35 H 0.10 3.31 7.88 -2.39 -0.02 3.29 16 36 H 0.02 0.93 7.20 -2.39 -0.02 0.91 16 37 H 0.01 0.35 7.57 -2.39 -0.02 0.34 16 38 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 39 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.07 1.71 8.13 -2.39 -0.02 1.69 16 41 H 0.05 0.81 6.12 -2.39 -0.01 0.79 16 42 H 0.10 1.37 6.01 -2.38 -0.01 1.36 16 43 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 44 H 0.06 0.76 5.63 -2.39 -0.01 0.75 16 45 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 46 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 47 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 48 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 49 H 0.06 0.60 8.14 -2.39 -0.02 0.59 16 50 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 51 H 0.07 0.86 6.11 -2.39 -0.01 0.84 16 52 H 0.05 0.72 7.20 -2.39 -0.02 0.70 16 53 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 54 H 0.08 1.62 8.13 -2.39 -0.02 1.60 16 55 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -70.36 419.27 0.55 -69.81 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: 0.79 Total: 13.81 kcal Atomic # 6 Polarization: -9.78 SS G_CDS: 7.75 Total: -2.03 kcal Atomic # 7 Polarization: -118.08 SS G_CDS: -9.87 Total: -127.96 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 1.88 Total: 46.37 kcal Total: -70.36 0.55 -69.81 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339513849.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.453 kcal (2) G-P(sol) polarization free energy of solvation -70.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds