Wall clock time and date at job start Wed Apr 1 2020 05:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36738 * 127.13590 * 2 1 4 4 C 1.50696 * 126.35075 * 359.97375 * 3 2 1 5 5 C 1.52996 * 109.47032 * 270.00257 * 4 3 2 6 6 C 1.53003 * 109.46997 * 179.97438 * 5 4 3 7 7 C 1.50705 * 109.47070 * 179.97438 * 6 5 4 8 8 H 1.08004 * 119.99993 * 0.02562 * 7 6 5 9 9 C 1.37876 * 119.99976 * 179.97438 * 7 6 5 10 10 N 1.31517 * 119.99997 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00074 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47127 * 60.00298 * 11 9 7 13 13 H 1.48497 * 109.47106 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.47135 * 300.00403 * 11 9 7 15 15 N 1.30301 * 107.30026 * 179.97438 * 3 2 1 16 16 N 1.28519 * 110.05747 * 359.97438 * 15 3 2 17 17 C 1.31220 * 109.86298 * 359.97438 * 16 15 3 18 18 N 1.38580 * 126.47816 * 179.97438 * 17 16 15 19 19 C 1.46845 * 111.00233 * 236.04906 * 18 17 16 20 20 C 1.53029 * 109.52495 * 174.16225 * 19 18 17 21 21 C 1.53115 * 109.28511 * 59.17500 * 20 19 18 22 22 C 1.53122 * 109.15964 * 302.35168 * 21 20 19 23 23 H 1.09000 * 109.49947 * 297.70715 * 22 21 20 24 24 N 1.46895 * 109.50392 * 177.58926 * 22 21 20 25 25 C 1.48541 * 110.99903 * 59.04094 * 24 22 21 26 26 C 1.54935 * 103.22642 * 159.72116 * 25 24 22 27 27 C 1.54594 * 102.92175 * 322.58279 * 26 25 24 28 28 C 1.47912 * 110.99898 * 176.43279 * 24 22 21 29 29 C 1.46844 * 110.99862 * 111.83642 * 18 17 16 30 30 H 1.09007 * 109.46898 * 89.97681 * 1 2 3 31 31 H 1.08998 * 109.47333 * 209.97376 * 1 2 3 32 32 H 1.09006 * 109.47327 * 329.98471 * 1 2 3 33 33 H 1.08996 * 109.47091 * 30.00023 * 4 3 2 34 34 H 1.09001 * 109.47086 * 150.00389 * 4 3 2 35 35 H 1.09003 * 109.47565 * 299.99488 * 5 4 3 36 36 H 1.09006 * 109.47500 * 59.99937 * 5 4 3 37 37 H 1.08996 * 109.47235 * 299.99832 * 6 5 4 38 38 H 1.09001 * 109.46977 * 60.00221 * 6 5 4 39 39 H 0.97005 * 119.99790 * 180.02562 * 10 9 7 40 40 H 1.08999 * 109.46049 * 294.17745 * 19 18 17 41 41 H 1.09002 * 109.46402 * 54.14908 * 19 18 17 42 42 H 1.09000 * 109.50834 * 179.12052 * 20 19 18 43 43 H 1.09006 * 109.50406 * 299.19667 * 20 19 18 44 44 H 1.09001 * 109.52172 * 62.24608 * 21 20 19 45 45 H 1.09000 * 109.52676 * 182.37891 * 21 20 19 46 46 H 1.09001 * 110.66359 * 278.15358 * 25 24 22 47 47 H 1.09002 * 110.66631 * 41.28283 * 25 24 22 48 48 H 1.09001 * 110.72507 * 204.22748 * 26 25 24 49 49 H 1.08994 * 110.72800 * 80.94057 * 26 25 24 50 50 H 1.09002 * 110.31161 * 263.04564 * 27 26 25 51 51 H 1.09001 * 110.39543 * 140.92379 * 27 26 25 52 52 H 1.08992 * 109.91281 * 333.51063 * 28 24 22 53 53 H 1.09000 * 109.91192 * 94.60959 * 28 24 22 54 54 H 1.08995 * 109.46359 * 305.85461 * 29 18 17 55 55 H 1.08997 * 109.46446 * 65.82710 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2905 1.0901 0.0000 4 6 1.8621 2.5349 -0.0006 5 6 1.7176 3.0234 -1.4432 6 6 1.2821 4.4901 -1.4438 7 6 1.1404 4.9715 -2.8648 8 1 1.3405 4.2985 -3.6855 9 6 0.7543 6.2708 -3.1173 10 7 0.5101 7.0902 -2.1179 11 14 0.5779 6.8673 -4.8786 12 1 -0.4429 6.0472 -5.5791 13 1 0.1554 8.2909 -4.8791 14 1 1.8816 6.7382 -5.5779 15 7 3.5162 0.6479 0.0006 16 7 3.5211 -0.6372 0.0014 17 6 2.2888 -1.0879 0.0021 18 7 1.8976 -2.4173 0.0026 19 6 1.0142 -2.7065 -1.1342 20 6 0.7208 -4.2075 -1.1851 21 6 0.0550 -4.6373 0.1250 22 6 0.9745 -4.2812 1.2965 23 1 1.9110 -4.8311 1.2042 24 7 0.3180 -4.6379 2.5613 25 6 -0.0002 -6.0881 2.6053 26 6 -0.1704 -6.3679 4.1197 27 6 0.9165 -5.4747 4.7605 28 6 1.2124 -4.3862 3.7121 29 6 1.2604 -2.7779 1.2755 30 1 -0.3633 0.0004 -1.0277 31 1 -0.3634 -0.8902 0.5134 32 1 -0.3634 0.8899 0.5141 33 1 0.9054 2.6304 0.5129 34 1 2.6120 3.1363 0.5133 35 1 2.6744 2.9280 -1.9568 36 1 0.9678 2.4219 -1.9572 37 1 0.3253 4.5852 -0.9304 38 1 2.0317 5.0919 -0.9298 39 1 0.2381 8.0042 -2.2956 40 1 0.0798 -2.1576 -1.0167 41 1 1.5013 -2.4001 -2.0599 42 1 0.0525 -4.4197 -2.0196 43 1 1.6533 -4.7563 -1.3171 44 1 -0.8964 -4.1175 0.2378 45 1 -0.1174 -5.7135 0.1101 46 1 -0.9266 -6.2951 2.0694 47 1 0.8219 -6.6750 2.1956 48 1 0.0144 -7.4191 4.3409 49 1 -1.1629 -6.0702 4.4578 50 1 1.8145 -6.0583 4.9636 51 1 0.5437 -5.0231 5.6799 52 1 2.2531 -4.4498 3.3943 53 1 1.0114 -3.3997 4.1298 54 1 1.9264 -2.5234 2.0999 55 1 0.3249 -2.2287 1.3817 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339565520.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:50 Heat of formation + Delta-G solvation = 60.840863 kcal Electronic energy + Delta-G solvation = -31261.082577 eV Core-core repulsion = 27332.999900 eV Total energy + Delta-G solvation = -3928.082677 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.238 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -44.15217 -40.97207 -39.05889 -36.82885 -35.94715 -34.96562 -34.03218 -33.02905 -31.24218 -29.93504 -29.45134 -28.91125 -28.46744 -25.79829 -25.33270 -24.21289 -22.60277 -22.57532 -21.87609 -21.59636 -21.44368 -20.80326 -18.66343 -18.39224 -17.52656 -17.39539 -16.94710 -16.56286 -16.54067 -16.06759 -15.93694 -15.77189 -15.47987 -15.07275 -14.83169 -14.49386 -14.45884 -14.24812 -14.06112 -13.86164 -13.84328 -13.69893 -13.26557 -13.17876 -12.86831 -12.73702 -12.66559 -12.62030 -12.49798 -12.45408 -12.23428 -12.07658 -11.90100 -11.74591 -11.60146 -11.53332 -11.46880 -11.40499 -11.34718 -11.27460 -11.15661 -10.53776 -10.14194 -9.93060 -9.46708 -8.19422 -6.29581 0.60234 1.27858 1.40237 1.42746 1.50566 1.70026 2.13651 2.41398 2.98284 3.13982 3.33551 3.46806 3.50730 3.69016 3.73950 3.81570 3.86243 3.90339 4.02972 4.06099 4.13846 4.15498 4.24325 4.31883 4.34593 4.36539 4.42628 4.49805 4.54480 4.59938 4.61590 4.67111 4.69138 4.74405 4.77699 4.87870 4.95335 4.95792 5.01911 5.03323 5.06232 5.07691 5.09279 5.15769 5.19095 5.30043 5.32153 5.39452 5.51207 5.54652 5.73647 5.85252 5.88926 6.04037 6.11440 6.25658 6.85867 7.39051 7.68076 8.91646 Molecular weight = 347.24amu Principal moments of inertia in cm(-1) A = 0.020408 B = 0.001930 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.681451 B =14505.405909 C =14807.257992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.493 5.493 3 C 0.202 3.798 4 C -0.025 4.025 5 C -0.084 4.084 6 C 0.028 3.972 7 C -0.545 4.545 8 H 0.054 0.946 9 C 0.003 3.997 10 N -0.928 5.928 11 Si 0.960 3.040 12 H -0.266 1.266 13 H -0.282 1.282 14 H -0.272 1.272 15 N -0.331 5.331 16 N -0.312 5.312 17 C 0.343 3.657 18 N -0.446 5.446 19 C 0.046 3.954 20 C -0.106 4.106 21 C -0.108 4.108 22 C 0.090 3.910 23 H 0.045 0.955 24 N -0.519 5.519 25 C 0.035 3.965 26 C -0.120 4.120 27 C -0.130 4.130 28 C 0.030 3.970 29 C 0.071 3.929 30 H 0.096 0.904 31 H 0.106 0.894 32 H 0.108 0.892 33 H 0.102 0.898 34 H 0.093 0.907 35 H 0.040 0.960 36 H 0.053 0.947 37 H 0.007 0.993 38 H -0.004 1.004 39 H 0.264 0.736 40 H 0.060 0.940 41 H 0.070 0.930 42 H 0.102 0.898 43 H 0.070 0.930 44 H 0.077 0.923 45 H 0.085 0.915 46 H 0.094 0.906 47 H 0.047 0.953 48 H 0.085 0.915 49 H 0.075 0.925 50 H 0.071 0.929 51 H 0.076 0.924 52 H 0.036 0.964 53 H 0.070 0.930 54 H 0.062 0.938 55 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.501 -31.564 10.973 34.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.190 5.190 3 C -0.067 4.067 4 C -0.064 4.064 5 C -0.123 4.123 6 C -0.009 4.009 7 C -0.583 4.583 8 H 0.072 0.928 9 C -0.195 4.195 10 N -0.568 5.568 11 Si 0.784 3.216 12 H -0.191 1.191 13 H -0.207 1.207 14 H -0.198 1.198 15 N -0.171 5.171 16 N -0.153 5.153 17 C -0.014 4.014 18 N -0.171 5.171 19 C -0.080 4.080 20 C -0.144 4.144 21 C -0.146 4.146 22 C -0.020 4.020 23 H 0.063 0.937 24 N -0.244 5.244 25 C -0.092 4.092 26 C -0.158 4.158 27 C -0.168 4.168 28 C -0.098 4.098 29 C -0.056 4.056 30 H 0.114 0.886 31 H 0.125 0.875 32 H 0.127 0.873 33 H 0.121 0.879 34 H 0.111 0.889 35 H 0.058 0.942 36 H 0.072 0.928 37 H 0.025 0.975 38 H 0.015 0.985 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.088 0.912 42 H 0.120 0.880 43 H 0.089 0.911 44 H 0.095 0.905 45 H 0.104 0.896 46 H 0.112 0.888 47 H 0.065 0.935 48 H 0.103 0.897 49 H 0.094 0.906 50 H 0.089 0.911 51 H 0.094 0.906 52 H 0.055 0.945 53 H 0.088 0.912 54 H 0.080 0.920 55 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.107 -31.403 10.999 33.829 hybrid contribution -0.811 0.970 -0.770 1.480 sum -6.918 -30.433 10.228 32.843 Atomic orbital electron populations 1.22656 0.73555 1.06644 1.05637 1.47408 1.10145 1.06608 1.54823 1.25117 0.86898 0.92713 1.01949 1.20170 1.03224 0.83783 0.99271 1.21334 1.00019 0.97226 0.93674 1.18979 0.95319 0.91042 0.95603 1.21622 1.45950 0.96939 0.93798 0.92751 1.25889 0.95024 0.97098 1.01463 1.70065 1.47464 1.06401 1.32901 0.85584 0.78816 0.77332 0.79825 1.19067 1.20682 1.19762 1.74119 1.19134 1.02899 1.20910 1.74336 1.17534 1.03102 1.20307 1.23071 0.87460 0.86026 1.04799 1.58998 1.44254 1.08114 1.05725 1.22515 0.94501 0.99553 0.91470 1.21568 1.01997 0.92146 0.98714 1.21663 0.98327 1.02727 0.91897 1.21682 0.96440 0.92932 0.90913 0.93707 1.64763 1.39610 1.18716 1.01283 1.23302 1.01351 0.86866 0.97654 1.22485 0.99347 1.00085 0.93903 1.22398 0.99596 0.96539 0.98299 1.22897 0.94793 1.00100 0.92045 1.22189 0.97528 0.97324 0.88576 0.88581 0.87538 0.87311 0.87934 0.88884 0.94160 0.92800 0.97470 0.98547 0.92729 0.92147 0.91152 0.88003 0.91107 0.90461 0.89609 0.88768 0.93472 0.89683 0.90617 0.91065 0.90571 0.94516 0.91164 0.91951 0.92342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.99 9.33 127.77 1.19 2.18 16 2 N -0.49 -13.46 3.21 -538.17 -1.73 -15.19 16 3 C 0.20 6.87 7.32 137.64 1.01 7.87 16 4 C -0.02 -0.82 5.59 29.85 0.17 -0.66 16 5 C -0.08 -3.40 5.13 30.59 0.16 -3.24 16 6 C 0.03 1.41 4.97 29.85 0.15 1.56 16 7 C -0.55 -30.72 9.11 25.60 0.23 -30.49 16 8 H 0.05 2.98 7.74 -2.91 -0.02 2.96 16 9 C 0.00 0.20 5.46 84.65 0.46 0.66 16 10 N -0.93 -55.41 13.29 21.45 0.28 -55.12 16 11 Si 0.96 44.02 29.54 68.60 2.03 46.05 16 12 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 13 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 14 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 15 N -0.33 -13.24 12.18 -49.54 -0.60 -13.85 16 16 N -0.31 -11.95 12.23 -58.00 -0.71 -12.66 16 17 C 0.34 10.25 6.65 260.11 1.73 11.98 16 18 N -0.45 -10.13 4.70 -706.18 -3.32 -13.44 16 19 C 0.05 0.78 5.13 86.32 0.44 1.23 16 20 C -0.11 -1.19 6.09 30.64 0.19 -1.00 16 21 C -0.11 -1.09 5.05 30.67 0.15 -0.94 16 22 C 0.09 1.28 1.80 44.97 0.08 1.36 16 23 H 0.04 0.77 7.98 -2.39 -0.02 0.75 16 24 N -0.52 -6.88 5.11 -857.51 -4.38 -11.26 16 25 C 0.04 0.34 5.38 86.65 0.47 0.80 16 26 C -0.12 -0.99 7.06 31.80 0.22 -0.76 16 27 C -0.13 -1.33 6.93 31.47 0.22 -1.11 16 28 C 0.03 0.42 5.52 86.44 0.48 0.89 16 29 C 0.07 1.32 4.48 86.33 0.39 1.71 16 30 H 0.10 1.51 7.97 -2.38 -0.02 1.49 16 31 H 0.11 1.39 4.96 -2.39 -0.01 1.38 16 32 H 0.11 1.70 7.25 -2.38 -0.02 1.68 16 33 H 0.10 2.86 7.27 -2.39 -0.02 2.85 16 34 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 35 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.05 2.07 8.14 -2.38 -0.02 2.05 16 37 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 38 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 39 H 0.26 14.85 8.31 -92.70 -0.77 14.08 16 40 H 0.06 0.86 5.65 -2.39 -0.01 0.84 16 41 H 0.07 1.42 8.10 -2.39 -0.02 1.40 16 42 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 44 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.09 0.65 7.06 -2.39 -0.02 0.63 16 46 H 0.09 0.71 7.72 -2.39 -0.02 0.69 16 47 H 0.05 0.45 8.01 -2.39 -0.02 0.43 16 48 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 49 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 50 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 51 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 52 H 0.04 0.59 7.64 -2.39 -0.02 0.57 16 53 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 54 H 0.06 1.40 7.28 -2.39 -0.02 1.39 16 55 H 0.06 1.00 5.74 -2.39 -0.01 0.98 16 Total: -1.00 -72.86 417.10 0.16 -72.70 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: 0.85 Total: 10.73 kcal Atomic # 6 Polarization: -15.70 SS G_CDS: 7.74 Total: -7.96 kcal Atomic # 7 Polarization: -111.06 SS G_CDS: -10.45 Total: -121.52 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -72.86 0.16 -72.70 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339565520.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.540 kcal (2) G-P(sol) polarization free energy of solvation -72.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds