Wall clock time and date at job start Wed Apr 1 2020 04:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50695 * 120.00218 * 2 1 4 4 N 1.46498 * 109.47038 * 124.99794 * 3 2 1 5 5 C 1.36738 * 127.13469 * 91.26558 * 4 3 2 6 6 C 1.50702 * 126.34981 * 0.02562 * 5 4 3 7 7 C 1.52996 * 109.47216 * 89.99931 * 6 5 4 8 8 C 1.50697 * 109.46869 * 180.02562 * 7 6 5 9 9 H 1.07996 * 120.00544 * 359.97438 * 8 7 6 10 10 C 1.37878 * 119.99842 * 179.97438 * 8 7 6 11 11 N 1.31510 * 120.00334 * 0.02562 * 10 8 7 12 12 Si 1.86806 * 120.00040 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.46767 * 90.00301 * 12 10 8 14 14 H 1.48499 * 109.47044 * 210.00137 * 12 10 8 15 15 H 1.48494 * 109.47237 * 330.00369 * 12 10 8 16 16 N 1.30300 * 107.30295 * 180.26254 * 5 4 3 17 17 N 1.28523 * 110.05375 * 359.55890 * 16 5 4 18 18 C 1.31214 * 109.86060 * 0.45307 * 17 16 5 19 19 N 1.38580 * 126.47457 * 179.72499 * 18 17 16 20 20 C 1.46962 * 110.99418 * 62.36683 * 19 18 17 21 21 C 1.53055 * 109.36214 * 176.81327 * 20 19 18 22 22 N 1.46953 * 109.36646 * 58.39729 * 21 20 19 23 23 C 1.46900 * 111.00073 * 176.81112 * 22 21 20 24 24 H 1.09004 * 109.47202 * 183.80063 * 23 22 21 25 25 C 1.53006 * 109.47001 * 63.80187 * 23 22 21 26 26 C 1.52998 * 109.47547 * 303.80317 * 23 22 21 27 27 C 1.53004 * 109.46710 * 295.00317 * 26 23 22 28 28 C 1.46962 * 110.88006 * 300.68124 * 22 21 20 29 29 C 1.46953 * 111.00147 * 298.56940 * 19 18 17 30 30 H 1.08000 * 119.99891 * 0.02562 * 1 2 3 31 31 H 1.08001 * 120.00079 * 179.97438 * 1 2 3 32 32 H 1.08001 * 119.99817 * 180.02562 * 2 1 3 33 33 H 1.09006 * 109.46881 * 5.00071 * 3 2 1 34 34 H 1.08998 * 109.47333 * 245.00025 * 3 2 1 35 35 H 1.09001 * 109.46864 * 329.99468 * 6 5 4 36 36 H 1.09000 * 109.47116 * 210.00285 * 6 5 4 37 37 H 1.09000 * 109.47296 * 60.00439 * 7 6 5 38 38 H 1.09005 * 109.47144 * 299.99762 * 7 6 5 39 39 H 0.96996 * 120.00646 * 179.97438 * 11 10 8 40 40 H 1.08995 * 109.48941 * 296.77524 * 20 19 18 41 41 H 1.08992 * 109.49334 * 56.84637 * 20 19 18 42 42 H 1.09007 * 109.48630 * 298.43049 * 21 20 19 43 43 H 1.09001 * 109.50735 * 178.37905 * 21 20 19 44 44 H 1.09002 * 109.47117 * 60.00014 * 25 23 22 45 45 H 1.08994 * 109.46914 * 179.97438 * 25 23 22 46 46 H 1.09004 * 109.47042 * 299.99974 * 25 23 22 47 47 H 1.09003 * 109.47060 * 54.99144 * 26 23 22 48 48 H 1.08993 * 109.47763 * 174.99897 * 26 23 22 49 49 H 1.08996 * 109.47816 * 59.99532 * 27 26 23 50 50 H 1.09002 * 109.47057 * 180.02562 * 27 26 23 51 51 H 1.09003 * 109.46916 * 299.99114 * 27 26 23 52 52 H 1.08997 * 109.48561 * 299.34752 * 28 22 21 53 53 H 1.09004 * 109.50207 * 179.29544 * 28 22 21 54 54 H 1.08996 * 109.48612 * 303.15000 * 29 19 18 55 55 H 1.08994 * 109.49255 * 63.19581 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9937 1.3318 1.1314 5 6 4.2984 0.9224 1.1373 6 6 5.0610 0.3525 -0.0309 7 6 5.7376 1.4882 -0.8011 8 6 6.4997 0.9183 -1.9696 9 1 6.5016 -0.1473 -2.1451 10 6 7.1945 1.7573 -2.8147 11 7 7.1927 3.0549 -2.6008 12 14 8.1398 1.0508 -4.2628 13 1 7.2528 0.9939 -5.4525 14 1 9.3103 1.9153 -4.5590 15 1 8.6076 -0.3182 -3.9281 16 7 4.7585 1.1117 2.3416 17 7 3.8432 1.6175 3.0887 18 6 2.7380 1.7704 2.3980 19 7 1.5378 2.2808 2.8664 20 6 1.6935 3.6752 3.3035 21 6 0.3330 4.2258 3.7378 22 7 -0.2056 3.3937 4.8227 23 6 -1.4778 3.9349 5.3193 24 1 -1.8204 3.3394 6.1656 25 6 -2.5236 3.8844 4.2036 26 6 -1.2764 5.3849 5.7641 27 6 -0.3251 5.4233 6.9619 28 6 -0.3612 1.9993 4.3855 29 6 0.9993 1.4488 3.9514 30 1 -0.5400 0.9353 -0.0004 31 1 -0.5400 -0.9353 -0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 1.3586 2.1316 0.0896 34 1 2.6213 1.4025 -0.9313 35 1 4.3729 -0.1751 -0.6914 36 1 5.8186 -0.3413 0.3335 37 1 6.4258 2.0157 -0.1406 38 1 4.9800 2.1820 -1.1655 39 1 7.6818 3.6452 -3.1951 40 1 2.3877 3.7179 4.1428 41 1 2.0816 4.2736 2.4794 42 1 -0.3533 4.2085 2.8912 43 1 0.4506 5.2507 4.0897 44 1 -2.6672 2.8514 3.8866 45 1 -3.4677 4.2855 4.5721 46 1 -2.1811 4.4799 3.3572 47 1 -0.8499 5.9610 4.9429 48 1 -2.2368 5.8144 6.0490 49 1 0.6353 4.9938 6.6771 50 1 -0.1820 6.4562 7.2792 51 1 -0.7516 4.8472 7.7832 52 1 -1.0555 1.9567 3.5464 53 1 -0.7496 1.4007 5.2096 54 1 0.8813 0.4240 3.5994 55 1 1.6857 1.4658 4.7978 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339571362.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:00 Heat of formation + Delta-G solvation = 88.444657 kcal Electronic energy + Delta-G solvation = -31796.596161 eV Core-core repulsion = 27869.710475 eV Total energy + Delta-G solvation = -3926.885686 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.238 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -44.05221 -40.79570 -37.94173 -37.23027 -35.98744 -34.11957 -33.88269 -33.13746 -32.09790 -30.86355 -29.90567 -28.00563 -27.27232 -26.74838 -25.01911 -24.26471 -23.83924 -22.73221 -21.89150 -21.45051 -20.85883 -19.98686 -18.70021 -18.43694 -17.61771 -17.29900 -16.75062 -16.50754 -16.09214 -15.97815 -15.87204 -15.65397 -15.30658 -15.01602 -14.84134 -14.60766 -14.53989 -14.40603 -14.18563 -13.94939 -13.47093 -13.32694 -13.19267 -12.92958 -12.87612 -12.84755 -12.71576 -12.51320 -12.47831 -12.43536 -12.16145 -12.07687 -12.05789 -11.82086 -11.80717 -11.58276 -11.54045 -11.31681 -11.26010 -11.07933 -10.58180 -10.53035 -9.98173 -9.96627 -9.17664 -8.21113 -6.33526 0.67099 0.92291 1.42459 1.44465 1.55229 1.56365 1.73311 2.41457 2.65762 2.87910 3.13207 3.45778 3.61153 3.71216 3.80959 3.82730 4.01977 4.05020 4.13931 4.15977 4.19965 4.23701 4.28117 4.32265 4.39103 4.50438 4.55387 4.59153 4.62633 4.68202 4.72291 4.72934 4.82315 4.84315 4.84786 4.86938 4.92107 5.00051 5.03953 5.07558 5.13573 5.22567 5.30951 5.41826 5.43289 5.49943 5.55942 5.56975 5.58581 5.59644 5.69653 5.77267 6.10312 6.12518 6.15905 6.23490 6.82167 7.36571 7.67100 8.91096 Molecular weight = 347.24amu Principal moments of inertia in cm(-1) A = 0.016980 B = 0.002336 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.646156 B =11982.635516 C =12485.570684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.196 4.196 3 C 0.137 3.863 4 N -0.456 5.456 5 C 0.203 3.797 6 C -0.015 4.015 7 C 0.044 3.956 8 C -0.538 4.538 9 H 0.073 0.927 10 C 0.001 3.999 11 N -0.935 5.935 12 Si 0.968 3.032 13 H -0.268 1.268 14 H -0.287 1.287 15 H -0.260 1.260 16 N -0.334 5.334 17 N -0.346 5.346 18 C 0.341 3.659 19 N -0.447 5.447 20 C 0.068 3.932 21 C 0.067 3.933 22 N -0.539 5.539 23 C 0.083 3.917 24 H 0.089 0.911 25 C -0.183 4.183 26 C -0.117 4.117 27 C -0.143 4.143 28 C 0.068 3.932 29 C 0.073 3.927 30 H 0.113 0.887 31 H 0.122 0.878 32 H 0.107 0.893 33 H 0.114 0.886 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.089 0.911 37 H -0.017 1.017 38 H -0.006 1.006 39 H 0.264 0.736 40 H 0.039 0.961 41 H 0.069 0.931 42 H 0.054 0.946 43 H 0.098 0.902 44 H 0.059 0.941 45 H 0.070 0.930 46 H 0.053 0.947 47 H 0.062 0.938 48 H 0.077 0.923 49 H 0.048 0.952 50 H 0.050 0.950 51 H 0.052 0.948 52 H 0.057 0.943 53 H 0.099 0.901 54 H 0.078 0.922 55 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.332 0.024 12.629 29.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.215 4.215 3 C 0.016 3.984 4 N -0.147 5.147 5 C -0.065 4.065 6 C -0.055 4.055 7 C 0.006 3.994 8 C -0.576 4.576 9 H 0.091 0.909 10 C -0.197 4.197 11 N -0.575 5.575 12 Si 0.792 3.208 13 H -0.194 1.194 14 H -0.213 1.213 15 H -0.184 1.184 16 N -0.174 5.174 17 N -0.190 5.190 18 C -0.016 4.016 19 N -0.174 5.174 20 C -0.059 4.059 21 C -0.061 4.061 22 N -0.264 5.264 23 C -0.024 4.024 24 H 0.107 0.893 25 C -0.242 4.242 26 C -0.155 4.155 27 C -0.201 4.201 28 C -0.060 4.060 29 C -0.054 4.054 30 H 0.131 0.869 31 H 0.140 0.860 32 H 0.125 0.875 33 H 0.132 0.868 34 H 0.115 0.885 35 H 0.113 0.887 36 H 0.107 0.893 37 H 0.001 0.999 38 H 0.012 0.988 39 H 0.072 0.928 40 H 0.058 0.942 41 H 0.088 0.912 42 H 0.072 0.928 43 H 0.116 0.884 44 H 0.078 0.922 45 H 0.089 0.911 46 H 0.072 0.928 47 H 0.081 0.919 48 H 0.096 0.904 49 H 0.067 0.933 50 H 0.069 0.931 51 H 0.071 0.929 52 H 0.075 0.925 53 H 0.118 0.882 54 H 0.097 0.903 55 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -25.329 0.213 13.743 28.818 hybrid contribution 0.342 0.062 -1.828 1.861 sum -24.987 0.275 11.915 27.684 Atomic orbital electron populations 1.24105 0.94469 1.03704 0.94643 1.22893 0.97022 0.96568 1.05014 1.21141 0.91480 0.99160 0.86584 1.46513 1.10883 1.46509 1.10812 1.25386 0.82863 1.00823 0.97473 1.20154 0.97452 0.98542 0.89337 1.18824 0.94090 0.92789 0.93713 1.21577 1.30848 0.94338 1.10865 0.90933 1.25998 0.97519 0.95045 1.01159 1.70117 1.43514 1.04285 1.39540 0.85398 0.77925 0.78580 0.78862 1.19368 1.21291 1.18447 1.73951 1.23912 1.18204 1.01299 1.74415 0.98456 1.19075 1.27023 1.22512 0.93312 1.02013 0.83758 1.59059 1.17410 1.03785 1.37168 1.22246 0.98955 0.85694 0.99024 1.22145 0.92983 0.97737 0.93280 1.62361 1.27617 1.01923 1.34469 1.21788 0.86946 0.96438 0.97263 0.89341 1.22432 1.00042 1.02248 0.99459 1.21662 1.00369 0.95015 0.98451 1.21639 0.99784 1.00900 0.97739 1.22128 0.94021 0.89541 1.00284 1.22216 0.96615 0.96030 0.90521 0.86909 0.85991 0.87477 0.86823 0.88529 0.88690 0.89287 0.99907 0.98756 0.92774 0.94212 0.91235 0.92807 0.88403 0.92194 0.91064 0.92767 0.91895 0.90442 0.93331 0.93115 0.92855 0.92454 0.88246 0.90327 0.94292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.01 14.32 67.78 0.97 -1.04 16 2 C -0.20 -4.21 9.85 25.65 0.25 -3.96 16 3 C 0.14 3.67 6.34 85.63 0.54 4.21 16 4 N -0.46 -15.77 2.79 -518.91 -1.45 -17.22 16 5 C 0.20 8.44 7.32 137.64 1.01 9.45 16 6 C -0.02 -0.63 5.35 29.85 0.16 -0.48 16 7 C 0.04 2.33 4.95 29.85 0.15 2.48 16 8 C -0.54 -29.71 9.11 25.60 0.23 -29.48 16 9 H 0.07 3.73 7.74 -2.91 -0.02 3.70 16 10 C 0.00 0.04 5.46 84.66 0.46 0.51 16 11 N -0.93 -56.91 13.29 21.45 0.28 -56.62 16 12 Si 0.97 43.41 29.54 68.60 2.03 45.44 16 13 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 14 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 15 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 16 N -0.33 -15.36 12.18 -49.53 -0.60 -15.96 16 17 N -0.35 -14.57 12.19 -58.01 -0.71 -15.27 16 18 C 0.34 11.78 6.45 260.11 1.68 13.45 16 19 N -0.45 -11.57 4.73 -705.56 -3.33 -14.90 16 20 C 0.07 1.68 5.53 86.31 0.48 2.16 16 21 C 0.07 1.13 4.84 86.31 0.42 1.55 16 22 N -0.54 -8.33 4.19 -870.44 -3.65 -11.98 16 23 C 0.08 0.94 2.43 44.92 0.11 1.05 16 24 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 25 C -0.18 -1.74 8.50 71.98 0.61 -1.13 16 26 C -0.12 -1.28 5.10 30.59 0.16 -1.12 16 27 C -0.14 -1.89 9.80 71.98 0.71 -1.18 16 28 C 0.07 1.03 5.13 86.31 0.44 1.48 16 29 C 0.07 1.63 5.53 86.31 0.48 2.11 16 30 H 0.11 1.46 7.84 -2.91 -0.02 1.44 16 31 H 0.12 1.42 8.06 -2.91 -0.02 1.40 16 32 H 0.11 2.45 8.06 -2.91 -0.02 2.43 16 33 H 0.11 2.63 7.79 -2.38 -0.02 2.61 16 34 H 0.10 2.82 7.81 -2.39 -0.02 2.81 16 35 H 0.09 3.46 7.88 -2.39 -0.02 3.44 16 36 H 0.09 3.71 8.14 -2.39 -0.02 3.69 16 37 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 38 H -0.01 -0.33 8.14 -2.38 -0.02 -0.35 16 39 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 40 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.07 1.83 8.13 -2.39 -0.02 1.81 16 42 H 0.05 0.86 6.57 -2.38 -0.02 0.84 16 43 H 0.10 1.51 5.95 -2.39 -0.01 1.50 16 44 H 0.06 0.57 6.48 -2.39 -0.02 0.56 16 45 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 46 H 0.05 0.59 6.56 -2.39 -0.02 0.57 16 47 H 0.06 0.73 6.00 -2.39 -0.01 0.71 16 48 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 49 H 0.05 0.83 7.75 -2.39 -0.02 0.81 16 50 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 51 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 52 H 0.06 0.79 6.48 -2.39 -0.02 0.77 16 53 H 0.10 1.21 8.14 -2.38 -0.02 1.19 16 54 H 0.08 1.73 8.13 -2.39 -0.02 1.71 16 55 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -71.61 431.31 2.26 -69.35 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: 0.84 Total: 17.12 kcal Atomic # 6 Polarization: -8.80 SS G_CDS: 8.85 Total: 0.05 kcal Atomic # 7 Polarization: -122.50 SS G_CDS: -9.46 Total: -131.96 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -71.61 2.26 -69.35 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339571362.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.795 kcal (2) G-P(sol) polarization free energy of solvation -71.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds