Wall clock time and date at job start Wed Apr 1 2020 05:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46496 * 109.47601 * 2 1 4 4 C 1.36743 * 127.13555 * 264.67311 * 3 2 1 5 5 C 1.50693 * 126.34967 * 0.05192 * 4 3 2 6 6 C 1.53004 * 109.47358 * 90.00061 * 5 4 3 7 7 C 1.50699 * 109.46900 * 180.02562 * 6 5 4 8 8 H 1.07999 * 120.00421 * 359.97438 * 7 6 5 9 9 C 1.37881 * 119.99629 * 180.02562 * 7 6 5 10 10 N 1.31516 * 120.00072 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99979 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47164 * 359.97438 * 11 9 7 13 13 H 1.48497 * 109.47247 * 119.99772 * 11 9 7 14 14 H 1.48506 * 109.47002 * 239.99893 * 11 9 7 15 15 N 1.30297 * 107.30630 * 180.02562 * 4 3 2 16 16 N 1.28537 * 110.05189 * 359.72852 * 15 4 3 17 17 C 1.31225 * 109.85717 * 0.44693 * 16 15 4 18 18 N 1.38577 * 126.46997 * 179.82033 * 17 16 15 19 19 C 1.47902 * 111.00254 * 323.00943 * 18 17 16 20 20 C 1.53985 * 107.06009 * 145.84102 * 19 18 17 21 21 C 1.54596 * 105.13962 * 358.77423 * 20 19 18 22 22 H 1.09008 * 110.72350 * 96.57991 * 21 20 19 23 23 N 1.46902 * 110.72697 * 219.67931 * 21 20 19 24 24 C 1.46843 * 111.00177 * 297.51633 * 23 21 20 25 25 C 1.53038 * 109.52321 * 174.15565 * 24 23 21 26 26 C 1.53121 * 109.27796 * 59.17799 * 25 24 23 27 27 C 1.53111 * 109.16094 * 302.34845 * 26 25 24 28 28 C 1.46836 * 111.00264 * 173.30117 * 23 21 20 29 29 C 1.48732 * 111.03978 * 80.58276 * 18 17 16 30 30 H 1.08995 * 109.47189 * 55.39068 * 1 2 3 31 31 H 1.08999 * 109.47454 * 175.39470 * 1 2 3 32 32 H 1.09006 * 109.46894 * 295.39241 * 1 2 3 33 33 H 1.09000 * 109.47187 * 239.99774 * 2 1 3 34 34 H 1.08999 * 109.47441 * 120.00367 * 2 1 3 35 35 H 1.09002 * 109.47512 * 210.00268 * 5 4 3 36 36 H 1.09007 * 109.46944 * 330.00010 * 5 4 3 37 37 H 1.08999 * 109.46494 * 299.99958 * 6 5 4 38 38 H 1.08995 * 109.46816 * 60.00338 * 6 5 4 39 39 H 0.96995 * 119.99857 * 180.02562 * 10 9 7 40 40 H 1.09008 * 109.91557 * 26.48458 * 19 18 17 41 41 H 1.09002 * 109.91244 * 265.20007 * 19 18 17 42 42 H 1.09000 * 110.31286 * 239.85648 * 20 19 18 43 43 H 1.09003 * 110.30908 * 117.69104 * 20 19 18 44 44 H 1.08995 * 109.46446 * 294.17320 * 24 23 21 45 45 H 1.09007 * 109.46334 * 54.13975 * 24 23 21 46 46 H 1.09000 * 109.50212 * 299.23859 * 25 24 23 47 47 H 1.09002 * 109.50263 * 179.11764 * 25 24 23 48 48 H 1.08994 * 109.52129 * 182.43831 * 26 25 24 49 49 H 1.09000 * 109.51825 * 62.24882 * 26 25 24 50 50 H 1.09008 * 109.50221 * 297.70927 * 27 26 25 51 51 H 1.08999 * 109.53786 * 177.61449 * 27 26 25 52 52 H 1.09006 * 109.46828 * 305.86304 * 28 23 21 53 53 H 1.09000 * 109.46693 * 65.82777 * 28 23 21 54 54 H 1.09007 * 110.83696 * 81.96629 * 29 18 17 55 55 H 1.08998 * 110.58777 * 318.77176 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3890 2.1257 -1.0854 5 6 2.3716 1.6775 -2.5240 6 6 1.0119 2.0056 -3.1441 7 6 0.9944 1.5568 -4.5826 8 1 1.8660 1.0851 -5.0118 9 6 -0.1340 1.7494 -5.3511 10 7 -1.1952 2.3243 -4.8286 11 14 -0.1561 1.1924 -7.1340 12 1 1.1519 0.5786 -7.4771 13 1 -1.2380 0.1938 -7.3273 14 1 -0.3995 2.3627 -8.0152 15 7 2.7595 3.2948 -0.6453 16 7 2.6437 3.3410 0.6340 17 6 2.1983 2.1913 1.0831 18 7 1.9518 1.8637 2.4069 19 6 2.9591 2.4753 3.3007 20 6 2.2399 2.8315 4.6149 21 6 0.7676 2.4142 4.3954 22 1 0.5810 1.4242 4.8118 23 7 -0.1461 3.4034 4.9824 24 6 0.0383 3.4925 6.4365 25 6 -0.8216 4.6298 6.9924 26 6 -2.2921 4.3603 6.6611 27 6 -2.4486 4.2237 5.1442 28 6 -1.5415 3.0982 4.6418 29 6 0.6353 2.3937 2.8519 30 1 -0.3633 0.5837 -0.8458 31 1 -0.3634 -1.0243 -0.0825 32 1 -0.3633 0.4407 0.9284 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 3.1568 2.1949 -3.0754 36 1 2.5426 0.6019 -2.5716 37 1 0.2269 1.4882 -2.5928 38 1 0.8411 3.0811 -3.0966 39 1 -1.9892 2.4594 -5.3692 40 1 3.3632 3.3779 2.8421 41 1 3.7615 1.7643 3.4973 42 1 2.3054 3.9030 4.8037 43 1 2.6715 2.2732 5.4457 44 1 -0.2608 2.5518 6.8988 45 1 1.0874 3.6885 6.6582 46 1 -0.5138 5.5729 6.5408 47 1 -0.6965 4.6855 8.0738 48 1 -2.9036 5.1892 7.0173 49 1 -2.6110 3.4370 7.1448 50 1 -2.1664 5.1605 4.6634 51 1 -3.4858 3.9897 4.9043 52 1 -1.6399 3.0078 3.5600 53 1 -1.8332 2.1593 5.1124 54 1 -0.1736 1.7311 2.5439 55 1 0.4772 3.4007 2.4659 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340294662.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:28 Heat of formation + Delta-G solvation = 58.958200 kcal Electronic energy + Delta-G solvation = -31758.619305 eV Core-core repulsion = 27830.454990 eV Total energy + Delta-G solvation = -3928.164315 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.238 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -44.05435 -40.83092 -38.91708 -36.86652 -35.95203 -34.79796 -33.61166 -32.10230 -31.71080 -31.33643 -29.90738 -29.02630 -27.11846 -25.20647 -24.93119 -24.38103 -23.77922 -23.14486 -21.55235 -21.29603 -21.15574 -20.62844 -18.76861 -18.42531 -17.60534 -17.25259 -17.03796 -16.46457 -16.21811 -15.79683 -15.58491 -15.39134 -15.15509 -15.08702 -14.77976 -14.59365 -14.42721 -14.28125 -14.19369 -14.00122 -13.78143 -13.45406 -13.41252 -13.15598 -13.02781 -12.90827 -12.62765 -12.58907 -12.43974 -12.37453 -12.21687 -12.10341 -11.92012 -11.87363 -11.75576 -11.57187 -11.56303 -11.28340 -11.22463 -11.20294 -11.11738 -10.57636 -10.31507 -9.67855 -9.29987 -8.20421 -6.32425 0.66890 1.25560 1.42191 1.43912 1.56489 1.72267 2.41752 2.53134 3.01389 3.13989 3.31038 3.47666 3.61230 3.69036 3.88252 3.94521 3.99490 4.01753 4.03113 4.06569 4.13074 4.23485 4.31453 4.33205 4.35284 4.47743 4.54153 4.55305 4.60883 4.64231 4.67924 4.70534 4.73367 4.78095 4.83821 4.87959 4.93224 4.93845 4.97051 5.04921 5.07202 5.08848 5.12591 5.16252 5.23241 5.30493 5.39808 5.47295 5.48948 5.52590 5.60708 5.79157 6.11284 6.12209 6.16321 6.21105 6.83588 7.37459 7.68100 8.91808 Molecular weight = 347.24amu Principal moments of inertia in cm(-1) A = 0.014613 B = 0.002394 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.613945 B =11692.178056 C =12739.211530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.105 3.895 3 N -0.461 5.461 4 C 0.202 3.798 5 C -0.017 4.017 6 C 0.044 3.956 7 C -0.537 4.537 8 H 0.072 0.928 9 C 0.001 3.999 10 N -0.934 5.934 11 Si 0.967 3.033 12 H -0.256 1.256 13 H -0.277 1.277 14 H -0.284 1.284 15 N -0.335 5.335 16 N -0.349 5.349 17 C 0.335 3.665 18 N -0.432 5.432 19 C 0.045 3.955 20 C -0.109 4.109 21 C 0.094 3.906 22 H 0.073 0.927 23 N -0.543 5.543 24 C 0.056 3.944 25 C -0.116 4.116 26 C -0.118 4.118 27 C -0.118 4.118 28 C 0.054 3.946 29 C 0.057 3.943 30 H 0.033 0.967 31 H 0.106 0.894 32 H 0.060 0.940 33 H 0.107 0.893 34 H 0.123 0.877 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.000 1.000 38 H -0.021 1.021 39 H 0.263 0.737 40 H 0.050 0.950 41 H 0.100 0.900 42 H 0.080 0.920 43 H 0.103 0.897 44 H 0.040 0.960 45 H 0.084 0.916 46 H 0.059 0.941 47 H 0.083 0.917 48 H 0.069 0.931 49 H 0.065 0.935 50 H 0.055 0.945 51 H 0.073 0.927 52 H 0.059 0.941 53 H 0.042 0.958 54 H 0.086 0.914 55 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.439 -5.615 27.230 27.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.016 4.016 3 N -0.153 5.153 4 C -0.067 4.067 5 C -0.056 4.056 6 C 0.006 3.994 7 C -0.575 4.575 8 H 0.091 0.909 9 C -0.197 4.197 10 N -0.574 5.574 11 Si 0.792 3.208 12 H -0.180 1.180 13 H -0.203 1.203 14 H -0.210 1.210 15 N -0.175 5.175 16 N -0.192 5.192 17 C -0.022 4.022 18 N -0.158 5.158 19 C -0.082 4.082 20 C -0.147 4.147 21 C -0.015 4.015 22 H 0.090 0.910 23 N -0.269 5.269 24 C -0.071 4.071 25 C -0.154 4.154 26 C -0.156 4.156 27 C -0.156 4.156 28 C -0.074 4.074 29 C -0.070 4.070 30 H 0.052 0.948 31 H 0.125 0.875 32 H 0.079 0.921 33 H 0.125 0.875 34 H 0.142 0.858 35 H 0.106 0.894 36 H 0.116 0.884 37 H 0.018 0.982 38 H -0.003 1.003 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.119 0.881 42 H 0.098 0.902 43 H 0.122 0.878 44 H 0.058 0.942 45 H 0.103 0.897 46 H 0.077 0.923 47 H 0.101 0.899 48 H 0.088 0.912 49 H 0.084 0.916 50 H 0.074 0.926 51 H 0.091 0.909 52 H 0.078 0.922 53 H 0.060 0.940 54 H 0.104 0.896 55 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 1.913 -4.289 27.038 27.443 hybrid contribution -1.139 -0.878 -1.125 1.827 sum 0.774 -5.167 25.912 26.434 Atomic orbital electron populations 1.22130 0.93809 1.04470 1.01588 1.22161 0.95941 0.77110 1.06430 1.46550 1.48646 1.14803 1.05350 1.25394 0.99362 0.88979 0.92952 1.20181 1.00698 1.01882 0.82867 1.18851 0.90897 0.94565 0.95109 1.21615 0.99916 1.39306 0.96638 0.90936 1.25984 0.95172 0.95093 1.03449 1.70130 1.04494 1.44332 1.38438 0.85362 0.78775 0.77884 0.78803 1.17960 1.20310 1.21032 1.73928 1.22058 1.18159 1.03322 1.74350 1.22047 1.18930 1.03907 1.22702 1.02995 0.87074 0.89468 1.61659 1.05160 1.54460 0.94495 1.22981 0.94333 0.98992 0.91859 1.22436 0.92882 1.02914 0.96444 1.22365 0.93171 0.94538 0.91399 0.90958 1.61947 1.04722 1.47801 1.12431 1.22147 1.01138 0.98178 0.85629 1.21593 0.94564 0.98287 1.00923 1.21564 0.96849 1.02104 0.95064 1.21583 0.98876 0.98394 0.96724 1.22094 0.87716 0.97517 1.00086 1.23334 0.89360 0.98287 0.96058 0.94816 0.87536 0.92119 0.87455 0.85849 0.89364 0.88401 0.98183 1.00300 0.92849 0.93111 0.88145 0.90156 0.87813 0.94178 0.89715 0.92252 0.89882 0.91221 0.91634 0.92596 0.90885 0.92221 0.93974 0.89623 0.94410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.20 10.24 71.98 0.74 -3.46 16 2 C 0.10 2.64 6.79 86.38 0.59 3.23 16 3 N -0.46 -15.86 2.81 -514.87 -1.45 -17.30 16 4 C 0.20 8.38 7.32 137.63 1.01 9.39 16 5 C -0.02 -0.69 5.52 29.85 0.16 -0.53 16 6 C 0.04 2.32 4.96 29.85 0.15 2.46 16 7 C -0.54 -29.50 9.11 25.60 0.23 -29.26 16 8 H 0.07 3.71 7.74 -2.91 -0.02 3.69 16 9 C 0.00 0.05 5.46 84.66 0.46 0.52 16 10 N -0.93 -56.68 13.29 21.45 0.28 -56.39 16 11 Si 0.97 43.35 29.54 68.60 2.03 45.38 16 12 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 13 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 14 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 15 N -0.34 -15.49 12.18 -49.54 -0.60 -16.09 16 16 N -0.35 -14.69 11.09 -58.00 -0.64 -15.34 16 17 C 0.34 11.62 6.69 260.11 1.74 13.36 16 18 N -0.43 -11.23 5.30 -692.98 -3.67 -14.91 16 19 C 0.05 1.00 6.64 86.44 0.57 1.58 16 20 C -0.11 -1.74 5.40 31.47 0.17 -1.57 16 21 C 0.09 1.66 2.75 46.12 0.13 1.78 16 22 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 23 N -0.54 -9.53 4.49 -864.10 -3.88 -13.41 16 24 C 0.06 0.73 5.30 86.33 0.46 1.19 16 25 C -0.12 -1.41 6.09 30.65 0.19 -1.22 16 26 C -0.12 -1.46 6.00 30.67 0.18 -1.27 16 27 C -0.12 -1.87 6.09 30.64 0.19 -1.68 16 28 C 0.05 0.93 5.29 86.33 0.46 1.39 16 29 C 0.06 1.39 4.82 86.61 0.42 1.81 16 30 H 0.03 1.17 6.84 -2.39 -0.02 1.15 16 31 H 0.11 2.09 8.14 -2.39 -0.02 2.08 16 32 H 0.06 1.49 6.92 -2.38 -0.02 1.48 16 33 H 0.11 2.52 7.11 -2.39 -0.02 2.50 16 34 H 0.12 2.40 8.14 -2.39 -0.02 2.38 16 35 H 0.09 3.66 8.14 -2.39 -0.02 3.64 16 36 H 0.10 3.47 7.18 -2.38 -0.02 3.46 16 37 H 0.00 -0.01 6.84 -2.39 -0.02 -0.02 16 38 H -0.02 -1.31 8.14 -2.39 -0.02 -1.33 16 39 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 40 H 0.05 1.42 6.92 -2.38 -0.02 1.40 16 41 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.08 1.41 7.80 -2.39 -0.02 1.39 16 43 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.04 0.47 8.14 -2.39 -0.02 0.45 16 45 H 0.08 0.97 6.89 -2.38 -0.02 0.95 16 46 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 47 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 48 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 49 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 50 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 51 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 52 H 0.06 1.22 6.76 -2.38 -0.02 1.21 16 53 H 0.04 0.65 8.14 -2.39 -0.02 0.64 16 54 H 0.09 2.02 6.64 -2.38 -0.02 2.01 16 55 H 0.04 1.19 7.99 -2.39 -0.02 1.17 16 Total: -1.00 -72.94 420.55 0.75 -72.19 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: 0.85 Total: 18.17 kcal Atomic # 6 Polarization: -10.13 SS G_CDS: 7.84 Total: -2.29 kcal Atomic # 7 Polarization: -123.47 SS G_CDS: -9.96 Total: -133.44 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Total: -72.94 0.75 -72.19 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340294662.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.146 kcal (2) G-P(sol) polarization free energy of solvation -72.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds