Wall clock time and date at job start Wed Apr 1 2020 04:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50701 * 120.00210 * 2 1 4 4 N 1.46497 * 109.47135 * 125.00012 * 3 2 1 5 5 C 1.36461 * 127.13630 * 275.35407 * 4 3 2 6 6 N 1.38580 * 126.47143 * 0.02562 * 5 4 3 7 7 C 1.47907 * 111.00172 * 243.06686 * 6 5 4 8 8 C 1.50802 * 108.50327 * 153.78937 * 7 6 5 9 9 C 1.53690 * 112.09928 * 92.54847 * 8 7 6 10 10 N 1.48062 * 112.47423 * 318.55540 * 9 8 7 11 11 C 1.46898 * 111.00169 * 192.19835 * 10 9 8 12 12 C 1.52998 * 109.47304 * 193.73262 * 11 10 9 13 13 C 1.44579 * 113.85395 * 318.31611 * 10 9 8 14 14 C 1.40017 * 111.00154 * 115.09517 * 6 5 4 15 15 N 1.31214 * 107.05397 * 179.97438 * 5 4 3 16 16 N 1.28529 * 109.86088 * 359.73280 * 15 5 4 17 17 C 1.30293 * 110.05038 * 0.45027 * 16 15 5 18 18 C 1.50698 * 126.34232 * 179.82747 * 17 16 15 19 19 C 1.53000 * 109.47241 * 115.12590 * 18 17 16 20 20 C 1.52999 * 109.47359 * 355.11979 * 18 17 16 21 21 C 1.50711 * 109.46918 * 235.12232 * 18 17 16 22 22 H 1.08000 * 119.99816 * 0.02562 * 21 18 17 23 23 C 1.37868 * 119.99975 * 179.72463 * 21 18 17 24 24 N 1.31515 * 120.00550 * 0.27352 * 23 21 18 25 25 Si 1.86804 * 120.00111 * 180.27716 * 23 21 18 26 26 H 1.48500 * 109.46960 * 59.99474 * 25 23 21 27 27 H 1.48493 * 109.47314 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.47076 * 300.00029 * 25 23 21 29 29 H 1.07994 * 120.00463 * 180.02562 * 1 2 3 30 30 H 1.08001 * 119.99803 * 0.02562 * 1 2 3 31 31 H 1.08001 * 119.99803 * 179.97438 * 2 1 3 32 32 H 1.08997 * 109.47255 * 4.99774 * 3 2 1 33 33 H 1.08996 * 109.46680 * 244.99590 * 3 2 1 34 34 H 1.09001 * 109.63483 * 273.49707 * 7 6 5 35 35 H 1.09005 * 109.62773 * 34.08406 * 7 6 5 36 36 H 1.09002 * 108.95025 * 331.87227 * 8 7 6 37 37 H 1.09003 * 108.88302 * 213.18263 * 8 7 6 38 38 H 1.09006 * 108.88218 * 197.78176 * 9 8 7 39 39 H 1.09003 * 108.80483 * 79.27675 * 9 8 7 40 40 H 1.09006 * 109.47213 * 313.73605 * 11 10 9 41 41 H 1.09006 * 109.47031 * 73.73218 * 11 10 9 42 42 H 1.08999 * 109.46921 * 60.00327 * 12 11 10 43 43 H 1.08998 * 109.46981 * 179.97438 * 12 11 10 44 44 H 1.09002 * 109.47013 * 299.99876 * 12 11 10 45 45 H 1.08999 * 109.57171 * 334.42197 * 13 10 9 46 46 H 1.08994 * 109.67878 * 214.09925 * 13 10 9 47 47 H 1.08996 * 108.95827 * 308.76674 * 14 6 5 48 48 H 1.08997 * 108.95396 * 67.51448 * 14 6 5 49 49 H 1.09006 * 109.47144 * 186.91103 * 19 18 17 50 50 H 1.09000 * 109.47189 * 306.90863 * 19 18 17 51 51 H 1.08998 * 109.47163 * 66.91627 * 19 18 17 52 52 H 1.08999 * 109.47237 * 300.00052 * 20 18 17 53 53 H 1.09003 * 109.47023 * 60.00790 * 20 18 17 54 54 H 1.09000 * 109.47000 * 180.02562 * 20 18 17 55 55 H 0.96997 * 120.00874 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.7176 1.6980 2.4166 6 7 1.4922 2.1194 2.9078 7 6 1.5676 3.5137 3.3954 8 6 0.1934 4.1279 3.3034 9 6 -0.5984 3.9718 4.6113 10 7 -0.4287 2.6324 5.2193 11 6 -1.4076 2.4134 6.2924 12 6 -0.9970 1.1910 7.1157 13 6 -0.4570 1.5484 4.2630 14 6 0.9896 1.2120 3.8483 15 7 3.8310 1.5745 3.0997 16 7 4.7709 1.1540 2.3305 17 6 4.3189 0.9947 1.1189 18 6 5.1086 0.5204 -0.0738 19 6 4.5582 -0.8265 -0.5469 20 6 6.5788 0.3612 0.3185 21 6 4.9921 1.5296 -1.1870 22 1 4.4053 2.4251 -1.0448 23 6 5.6397 1.3127 -2.3846 24 7 6.3547 0.2225 -2.5577 25 14 5.5017 2.5673 -3.7617 26 1 6.0347 3.8731 -3.2969 27 1 6.2847 2.1029 -4.9349 28 1 4.0763 2.7238 -4.1478 29 1 -0.5400 -0.9352 0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3587 2.1316 0.0895 33 1 2.6214 1.4024 -0.9313 34 1 1.9036 3.5214 4.4323 35 1 2.2643 4.0805 2.7776 36 1 -0.3570 3.6446 2.4962 37 1 0.2958 5.1890 3.0759 38 1 -1.6564 4.1339 4.4047 39 1 -0.2583 4.7267 5.3203 40 1 -1.4418 3.2913 6.9377 41 1 -2.3924 2.2441 5.8568 42 1 -0.0123 1.3604 7.5512 43 1 -1.7231 1.0288 7.9122 44 1 -0.9628 0.3131 6.4704 45 1 -1.0276 1.8509 3.3850 46 1 -0.9204 0.6718 4.7156 47 1 1.0113 0.2098 3.4202 48 1 1.6244 1.2323 4.7341 49 1 5.2029 -1.2281 -1.3288 50 1 4.5284 -1.5218 0.2920 51 1 3.5513 -0.6894 -0.9412 52 1 6.9709 1.3208 0.6555 53 1 6.6631 -0.3688 1.1236 54 1 7.1500 0.0186 -0.5443 55 1 6.8100 0.0697 -3.4004 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340428213.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:16 Heat of formation + Delta-G solvation = 108.336498 kcal Electronic energy + Delta-G solvation = -33189.600909 eV Core-core repulsion = 29263.577798 eV Total energy + Delta-G solvation = -3926.023111 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.238 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.87689 -40.59395 -37.91164 -37.44601 -36.58416 -34.05591 -33.59583 -33.26360 -31.71307 -30.10305 -28.27469 -27.55953 -27.50721 -27.23484 -26.73538 -23.84637 -23.53204 -22.64912 -21.69333 -20.98716 -20.86890 -20.29986 -18.70148 -18.26870 -17.28820 -17.10396 -16.93367 -16.60471 -16.24770 -15.96697 -15.82856 -15.56981 -15.28109 -14.79751 -14.72229 -14.46561 -14.30638 -13.88375 -13.66344 -13.35212 -13.24879 -13.02970 -12.92133 -12.88407 -12.80383 -12.71535 -12.58860 -12.49167 -12.44814 -12.40811 -12.25117 -12.11695 -11.85036 -11.80609 -11.67258 -11.63481 -11.61891 -11.38429 -11.01704 -10.80949 -10.45240 -10.40172 -9.76553 -9.68108 -9.09147 -8.06931 -6.24432 0.94657 1.10140 1.44854 1.48237 1.53579 1.74065 1.98050 2.44111 2.81005 2.95492 3.17260 3.71247 3.82597 3.85658 3.95917 4.01109 4.05586 4.09178 4.26338 4.32547 4.35404 4.39783 4.46222 4.50364 4.54847 4.63844 4.68350 4.69031 4.70819 4.74455 4.79563 4.92195 4.94184 4.97550 5.00526 5.01820 5.06529 5.09346 5.14156 5.21868 5.26436 5.29899 5.35831 5.40240 5.54935 5.56520 5.65394 5.71966 5.82512 5.96480 5.99778 6.09299 6.26226 6.26691 6.31509 6.44800 6.73625 7.42887 7.92167 8.93646 Molecular weight = 347.24amu Principal moments of inertia in cm(-1) A = 0.016775 B = 0.003123 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.778195 B = 8962.417560 C = 9151.810477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.191 4.191 3 C 0.137 3.863 4 N -0.451 5.451 5 C 0.331 3.669 6 N -0.452 5.452 7 C 0.087 3.913 8 C -0.111 4.111 9 C 0.068 3.932 10 N -0.573 5.573 11 C 0.060 3.940 12 C -0.149 4.149 13 C 0.080 3.920 14 C 0.090 3.910 15 N -0.353 5.353 16 N -0.348 5.348 17 C 0.231 3.769 18 C 0.144 3.856 19 C -0.116 4.116 20 C -0.107 4.107 21 C -0.525 4.525 22 H 0.047 0.953 23 C 0.039 3.961 24 N -0.895 5.895 25 Si 0.948 3.052 26 H -0.283 1.283 27 H -0.283 1.283 28 H -0.265 1.265 29 H 0.119 0.881 30 H 0.115 0.885 31 H 0.097 0.903 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.050 0.950 35 H 0.050 0.950 36 H 0.076 0.924 37 H 0.093 0.907 38 H 0.051 0.949 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.043 0.957 42 H 0.047 0.953 43 H 0.073 0.927 44 H 0.052 0.948 45 H 0.060 0.940 46 H 0.092 0.908 47 H 0.056 0.944 48 H 0.022 0.978 49 H 0.075 0.925 50 H 0.012 0.988 51 H 0.047 0.953 52 H 0.017 0.983 53 H 0.020 0.980 54 H 0.076 0.924 55 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.073 3.680 9.733 23.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.210 4.210 3 C 0.016 3.984 4 N -0.141 5.141 5 C -0.026 4.026 6 N -0.178 5.178 7 C -0.039 4.039 8 C -0.149 4.149 9 C -0.059 4.059 10 N -0.298 5.298 11 C -0.067 4.067 12 C -0.207 4.207 13 C -0.049 4.049 14 C -0.039 4.039 15 N -0.196 5.196 16 N -0.188 5.188 17 C -0.038 4.038 18 C 0.141 3.859 19 C -0.174 4.174 20 C -0.165 4.165 21 C -0.563 4.563 22 H 0.066 0.934 23 C -0.162 4.162 24 N -0.533 5.533 25 Si 0.774 3.226 26 H -0.209 1.209 27 H -0.208 1.208 28 H -0.189 1.189 29 H 0.137 0.863 30 H 0.133 0.867 31 H 0.115 0.885 32 H 0.124 0.876 33 H 0.124 0.876 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.095 0.905 37 H 0.112 0.888 38 H 0.069 0.931 39 H 0.095 0.905 40 H 0.097 0.903 41 H 0.061 0.939 42 H 0.066 0.934 43 H 0.092 0.908 44 H 0.071 0.929 45 H 0.078 0.922 46 H 0.110 0.890 47 H 0.075 0.925 48 H 0.040 0.960 49 H 0.093 0.907 50 H 0.031 0.969 51 H 0.066 0.934 52 H 0.036 0.964 53 H 0.039 0.961 54 H 0.095 0.905 55 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -19.913 3.623 10.617 22.855 hybrid contribution -0.244 0.431 -1.486 1.567 sum -20.157 4.054 9.130 22.497 Atomic orbital electron populations 1.24038 0.94235 1.03546 0.95700 1.22970 0.97017 0.96867 1.04171 1.21163 0.91341 0.98012 0.87906 1.46357 1.09778 1.48606 1.09357 1.22441 0.93017 1.03605 0.83508 1.56160 1.16721 1.04364 1.40573 1.21766 0.98734 0.84563 0.98819 1.21434 0.93738 1.01677 0.98092 1.22380 0.98579 0.89635 0.95302 1.60659 1.53001 1.02272 1.13916 1.22039 0.92531 0.99403 0.92710 1.21840 1.01675 0.97268 0.99870 1.21773 0.93221 0.94795 0.95129 1.20976 0.97118 0.93681 0.92155 1.74359 0.97900 1.20210 1.27168 1.73929 1.23814 1.20356 1.00661 1.25838 0.82218 0.98581 0.97182 1.16811 0.90045 0.94040 0.84959 1.21759 1.00757 0.95546 0.99370 1.21491 0.97653 0.97990 0.99365 1.20916 1.32425 1.05296 0.97712 0.93430 1.25414 0.94163 0.96780 0.99860 1.69901 1.31395 1.26207 1.25751 0.85768 0.78693 0.79257 0.78887 1.20893 1.20798 1.18932 0.86278 0.86653 0.88490 0.87560 0.87633 0.93112 0.93109 0.90535 0.88835 0.93056 0.90531 0.90260 0.93912 0.93400 0.90808 0.92935 0.92208 0.89019 0.92532 0.95997 0.90660 0.96877 0.93403 0.96407 0.96128 0.90500 0.92472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 14.32 67.78 0.97 -1.88 16 2 C -0.19 -5.48 9.09 25.64 0.23 -5.25 16 3 C 0.14 4.59 5.69 85.63 0.49 5.07 16 4 N -0.45 -18.20 2.79 -518.93 -1.45 -19.64 16 5 C 0.33 12.93 6.11 260.11 1.59 14.52 16 6 N -0.45 -13.33 4.09 -721.42 -2.95 -16.27 16 7 C 0.09 2.32 5.28 85.40 0.45 2.77 16 8 C -0.11 -1.97 5.36 30.11 0.16 -1.80 16 9 C 0.07 1.02 5.42 86.31 0.47 1.49 16 10 N -0.57 -10.11 3.94 -895.21 -3.53 -13.64 16 11 C 0.06 0.81 5.55 86.30 0.48 1.28 16 12 C -0.15 -2.06 9.88 71.98 0.71 -1.35 16 13 C 0.08 1.49 5.15 87.14 0.45 1.93 16 14 C 0.09 2.44 4.97 87.95 0.44 2.87 16 15 N -0.35 -16.39 12.21 -58.00 -0.71 -17.10 16 16 N -0.35 -17.69 11.51 -49.54 -0.57 -18.26 16 17 C 0.23 11.01 6.28 137.64 0.86 11.87 16 18 C 0.14 7.10 0.53 -53.67 -0.03 7.07 16 19 C -0.12 -5.34 7.97 71.98 0.57 -4.77 16 20 C -0.11 -5.46 7.75 71.98 0.56 -4.91 16 21 C -0.53 -26.68 6.26 25.60 0.16 -26.52 16 22 H 0.05 2.44 7.11 -2.91 -0.02 2.42 16 23 C 0.04 1.98 5.15 84.65 0.44 2.41 16 24 N -0.90 -46.35 9.43 21.44 0.20 -46.15 16 25 Si 0.95 40.35 29.54 68.60 2.03 42.37 16 26 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 27 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 28 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 29 H 0.12 1.99 8.06 -2.91 -0.02 1.97 16 30 H 0.12 1.99 7.84 -2.91 -0.02 1.97 16 31 H 0.10 3.12 6.84 -2.91 -0.02 3.10 16 32 H 0.11 3.04 7.79 -2.39 -0.02 3.02 16 33 H 0.11 4.03 5.45 -2.39 -0.01 4.02 16 34 H 0.05 1.49 7.57 -2.39 -0.02 1.47 16 35 H 0.05 1.54 7.84 -2.38 -0.02 1.52 16 36 H 0.08 1.35 7.23 -2.39 -0.02 1.33 16 37 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.05 0.62 8.03 -2.38 -0.02 0.60 16 39 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.08 0.95 8.03 -2.38 -0.02 0.94 16 41 H 0.04 0.49 8.12 -2.38 -0.02 0.47 16 42 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.05 0.76 6.38 -2.39 -0.02 0.74 16 45 H 0.06 1.04 6.93 -2.39 -0.02 1.03 16 46 H 0.09 1.47 5.86 -2.39 -0.01 1.46 16 47 H 0.06 1.64 7.99 -2.39 -0.02 1.62 16 48 H 0.02 0.71 8.06 -2.39 -0.02 0.69 16 49 H 0.07 3.71 6.29 -2.38 -0.02 3.70 16 50 H 0.01 0.55 8.13 -2.39 -0.02 0.53 16 51 H 0.05 2.04 5.11 -2.39 -0.01 2.03 16 52 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 53 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 54 H 0.08 4.08 6.06 -2.39 -0.01 4.06 16 55 H 0.27 13.19 8.31 -92.71 -0.77 12.42 16 Total: -1.00 -62.53 413.48 2.88 -59.65 By element: Atomic # 1 Polarization: 23.35 SS G_CDS: 0.86 Total: 24.20 kcal Atomic # 6 Polarization: -4.17 SS G_CDS: 9.00 Total: 4.83 kcal Atomic # 7 Polarization: -122.06 SS G_CDS: -9.00 Total: -131.06 kcal Atomic # 14 Polarization: 40.35 SS G_CDS: 2.03 Total: 42.37 kcal Total: -62.53 2.88 -59.65 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340428213.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.985 kcal (2) G-P(sol) polarization free energy of solvation -62.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds