Wall clock time and date at job start Wed Apr 1 2020 05:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50703 * 119.99885 * 2 1 4 4 N 1.46500 * 109.47269 * 119.38440 * 3 2 1 5 5 C 1.36457 * 127.13545 * 267.83791 * 4 3 2 6 6 N 1.38585 * 126.47462 * 0.24403 * 5 4 3 7 7 C 1.46955 * 111.00115 * 98.33113 * 6 5 4 8 8 C 1.53051 * 109.36391 * 183.18992 * 7 6 5 9 9 N 1.46964 * 109.36505 * 301.60250 * 8 7 6 10 10 C 1.46897 * 110.99917 * 183.19026 * 9 8 7 11 11 C 1.53002 * 109.47363 * 66.04332 * 10 9 8 12 12 C 1.46955 * 110.87982 * 59.31739 * 9 8 7 13 13 H 1.08997 * 109.48654 * 60.65277 * 12 9 8 14 14 C 1.52998 * 109.48518 * 180.69203 * 12 9 8 15 15 C 1.46955 * 110.99859 * 222.13622 * 6 5 4 16 16 N 1.31215 * 107.05456 * 179.97438 * 5 4 3 17 17 N 1.28535 * 109.85662 * 0.02562 * 16 5 4 18 18 C 1.30295 * 110.05299 * 359.97438 * 17 16 5 19 19 C 1.50704 * 126.34431 * 180.02562 * 18 17 16 20 20 C 1.53008 * 109.46957 * 353.69454 * 19 18 17 21 21 C 1.52994 * 109.47269 * 113.69383 * 19 18 17 22 22 C 1.50693 * 109.46910 * 233.69886 * 19 18 17 23 23 H 1.08004 * 120.00695 * 359.97438 * 22 19 18 24 24 C 1.37884 * 120.00005 * 180.02562 * 22 19 18 25 25 N 1.31519 * 119.99508 * 359.97438 * 24 22 19 26 26 Si 1.86799 * 120.00325 * 179.97438 * 24 22 19 27 27 H 1.48492 * 109.47112 * 89.99515 * 26 24 22 28 28 H 1.48498 * 109.46900 * 210.00161 * 26 24 22 29 29 H 1.48504 * 109.46760 * 329.99654 * 26 24 22 30 30 H 1.07994 * 120.00316 * 0.02562 * 1 2 3 31 31 H 1.07999 * 119.99683 * 180.02562 * 1 2 3 32 32 H 1.07994 * 120.00316 * 179.97438 * 2 1 3 33 33 H 1.09002 * 109.47111 * 359.38521 * 3 2 1 34 34 H 1.08999 * 109.47097 * 239.38539 * 3 2 1 35 35 H 1.08994 * 109.49072 * 303.15703 * 7 6 5 36 36 H 1.08998 * 109.48607 * 63.22631 * 7 6 5 37 37 H 1.08998 * 109.48793 * 61.56626 * 8 7 6 38 38 H 1.08996 * 109.48845 * 181.61003 * 8 7 6 39 39 H 1.08997 * 109.46792 * 186.04324 * 10 9 8 40 40 H 1.09004 * 109.47055 * 306.04359 * 10 9 8 41 41 H 1.08997 * 109.47160 * 299.99767 * 11 10 9 42 42 H 1.09004 * 109.47013 * 60.00001 * 11 10 9 43 43 H 1.08998 * 109.47288 * 179.97438 * 11 10 9 44 44 H 1.09003 * 109.47365 * 60.00280 * 14 12 9 45 45 H 1.09003 * 109.46746 * 180.02562 * 14 12 9 46 46 H 1.08997 * 109.47419 * 299.99683 * 14 12 9 47 47 H 1.08998 * 109.48692 * 296.77300 * 15 6 5 48 48 H 1.09001 * 109.49014 * 56.83968 * 15 6 5 49 49 H 1.09005 * 109.46878 * 59.30693 * 20 19 18 50 50 H 1.08997 * 109.46909 * 179.30650 * 20 19 18 51 51 H 1.08999 * 109.47044 * 299.30913 * 20 19 18 52 52 H 1.09006 * 109.46674 * 59.82347 * 21 19 18 53 53 H 1.08996 * 109.47429 * 179.82566 * 21 19 18 54 54 H 1.09002 * 109.47583 * 299.83230 * 21 19 18 55 55 H 0.96999 * 119.99694 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.8946 1.3892 1.2035 5 6 2.5551 1.9470 2.4017 6 7 1.3455 2.5442 2.7193 7 6 0.4719 1.6114 3.4446 8 6 -0.8794 2.2807 3.7060 9 7 -0.6714 3.5127 4.4797 10 6 -1.9535 4.1458 4.8163 11 6 -2.7329 3.2419 5.7737 12 6 0.2023 4.4455 3.7543 13 1 -0.2607 4.7134 2.8046 14 6 0.4110 5.7072 4.5943 15 6 1.5536 3.7762 3.4929 16 7 3.5882 1.8058 3.1984 17 7 4.5387 1.2026 2.5780 18 6 4.1711 0.9250 1.3592 19 6 4.9996 0.2221 0.3147 20 6 6.4187 0.0112 0.8464 21 6 4.3693 -1.1339 -0.0086 22 6 5.0512 1.0629 -0.9348 23 1 4.5353 2.0111 -0.9695 24 6 5.7561 0.6211 -2.0344 25 7 6.3838 -0.5339 -1.9924 26 14 5.8195 1.6629 -3.5836 27 1 6.9848 2.5807 -3.5155 28 1 5.9540 0.7790 -4.7693 29 1 4.5699 2.4571 -3.6975 30 1 -0.5400 0.9352 -0.0004 31 1 -0.5399 -0.9353 0.0004 32 1 1.8500 -0.9352 0.0004 33 1 1.3552 2.1336 -0.0110 34 1 2.6984 1.3581 -0.8844 35 1 0.3229 0.7127 2.8461 36 1 0.9348 1.3435 4.3944 37 1 -1.3546 2.5240 2.7557 38 1 -1.5190 1.6010 4.2689 39 1 -1.7692 5.1080 5.2941 40 1 -2.5339 4.2972 3.9061 41 1 -2.9172 2.2797 5.2959 42 1 -2.1525 3.0904 6.6838 43 1 -3.6840 3.7118 6.0237 44 1 0.8747 5.4391 5.5437 45 1 1.0587 6.3991 4.0558 46 1 -0.5518 6.1825 4.7815 47 1 2.0288 3.5329 4.4432 48 1 2.1931 4.4558 2.9296 49 1 6.3803 -0.5866 1.7572 50 1 7.0144 -0.5081 0.0958 51 1 6.8722 0.9779 1.0652 52 1 3.3571 -0.9838 -0.3844 53 1 4.9667 -1.6410 -0.7662 54 1 4.3347 -1.7432 0.8946 55 1 6.8794 -0.8449 -2.7661 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340428834.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:07 Heat of formation + Delta-G solvation = 107.739147 kcal Electronic energy + Delta-G solvation = -33101.511256 eV Core-core repulsion = 29175.462241 eV Total energy + Delta-G solvation = -3926.049014 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.238 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.88968 -40.67805 -37.88581 -37.25381 -36.46985 -33.83584 -33.60658 -33.35012 -31.86189 -29.63748 -28.30008 -27.94104 -27.62612 -27.24069 -26.69824 -23.84674 -23.66069 -22.82366 -21.83046 -21.40044 -20.64686 -20.16146 -18.61900 -18.16408 -17.34483 -17.14279 -16.85376 -16.59411 -16.13489 -16.01508 -15.65439 -15.40267 -15.39803 -15.05125 -14.80981 -14.56710 -14.28688 -13.67202 -13.50169 -13.43215 -13.22912 -13.17078 -12.99238 -12.95935 -12.92754 -12.78569 -12.70343 -12.55703 -12.45387 -12.39063 -12.24587 -12.22691 -12.05257 -11.82844 -11.74035 -11.49384 -11.44899 -11.37242 -11.05919 -10.78999 -10.49102 -10.42936 -10.14424 -9.55781 -9.28412 -8.07628 -6.25353 0.89182 1.04284 1.43210 1.47266 1.53609 1.67696 1.94897 2.42970 2.76462 2.82530 3.16302 3.63677 3.77102 3.80365 3.87326 3.93525 4.00018 4.16146 4.18808 4.25251 4.29471 4.30998 4.42360 4.50544 4.53803 4.59753 4.66121 4.68955 4.72801 4.74336 4.76095 4.84475 4.90702 4.92982 4.96842 5.00178 5.02463 5.10762 5.12867 5.18041 5.20071 5.33879 5.35885 5.42825 5.51702 5.55318 5.60891 5.64582 5.68237 5.77001 5.98560 6.06728 6.08809 6.15539 6.26716 6.35755 6.72744 7.41966 7.88929 8.92659 Molecular weight = 347.24amu Principal moments of inertia in cm(-1) A = 0.016387 B = 0.003085 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.270836 B = 9074.045415 C = 9240.777040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.199 4.199 3 C 0.135 3.865 4 N -0.451 5.451 5 C 0.327 3.673 6 N -0.450 5.450 7 C 0.070 3.930 8 C 0.069 3.931 9 N -0.547 5.547 10 C 0.047 3.953 11 C -0.146 4.146 12 C 0.094 3.906 13 H 0.052 0.948 14 C -0.142 4.142 15 C 0.080 3.920 16 N -0.352 5.352 17 N -0.347 5.347 18 C 0.232 3.768 19 C 0.145 3.855 20 C -0.106 4.106 21 C -0.129 4.129 22 C -0.523 4.523 23 H 0.048 0.952 24 C 0.039 3.961 25 N -0.895 5.895 26 Si 0.948 3.052 27 H -0.285 1.285 28 H -0.279 1.279 29 H -0.267 1.267 30 H 0.114 0.886 31 H 0.121 0.879 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.105 0.895 35 H 0.079 0.921 36 H 0.034 0.966 37 H 0.051 0.949 38 H 0.104 0.896 39 H 0.088 0.912 40 H 0.039 0.961 41 H 0.055 0.945 42 H 0.053 0.947 43 H 0.072 0.928 44 H 0.058 0.942 45 H 0.066 0.934 46 H 0.080 0.920 47 H 0.043 0.957 48 H 0.068 0.932 49 H 0.020 0.980 50 H 0.076 0.924 51 H 0.016 0.984 52 H 0.055 0.945 53 H 0.078 0.922 54 H 0.013 0.987 55 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.099 6.892 7.353 23.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.217 4.217 3 C 0.014 3.986 4 N -0.141 5.141 5 C -0.031 4.031 6 N -0.176 5.176 7 C -0.058 4.058 8 C -0.059 4.059 9 N -0.273 5.273 10 C -0.080 4.080 11 C -0.203 4.203 12 C -0.015 4.015 13 H 0.070 0.930 14 C -0.199 4.199 15 C -0.047 4.047 16 N -0.196 5.196 17 N -0.186 5.186 18 C -0.037 4.037 19 C 0.142 3.858 20 C -0.165 4.165 21 C -0.187 4.187 22 C -0.562 4.562 23 H 0.066 0.934 24 C -0.162 4.162 25 N -0.532 5.532 26 Si 0.774 3.226 27 H -0.211 1.211 28 H -0.205 1.205 29 H -0.192 1.192 30 H 0.132 0.868 31 H 0.140 0.860 32 H 0.125 0.875 33 H 0.125 0.875 34 H 0.123 0.877 35 H 0.098 0.902 36 H 0.052 0.948 37 H 0.069 0.931 38 H 0.122 0.878 39 H 0.106 0.894 40 H 0.057 0.943 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.091 0.909 44 H 0.077 0.923 45 H 0.085 0.915 46 H 0.099 0.901 47 H 0.061 0.939 48 H 0.087 0.913 49 H 0.039 0.961 50 H 0.094 0.906 51 H 0.036 0.964 52 H 0.074 0.926 53 H 0.097 0.903 54 H 0.032 0.968 55 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -20.154 6.875 8.482 22.922 hybrid contribution 0.173 0.225 -1.971 1.992 sum -19.981 7.100 6.511 22.182 Atomic orbital electron populations 1.24117 0.94305 1.03628 0.95600 1.23219 0.97090 0.97351 1.04075 1.21189 0.93918 0.98002 0.85528 1.46305 1.12840 1.43260 1.11734 1.22495 0.94620 1.01316 0.84633 1.58966 1.06410 1.06027 1.46164 1.22266 0.93006 0.94516 0.95965 1.22132 0.94237 0.92418 0.97090 1.62207 1.15193 1.05622 1.44288 1.22231 0.88139 0.98871 0.98770 1.21782 0.99696 0.99628 0.99231 1.21577 0.91114 0.92589 0.96176 0.92967 1.21854 1.03079 0.95060 0.99939 1.22177 0.98073 0.88669 0.95830 1.74345 0.99623 1.18973 1.26644 1.73920 1.22460 1.17299 1.04899 1.25867 0.83796 0.98324 0.95689 1.16803 0.89483 0.91956 0.87535 1.21492 0.97985 0.98736 0.98267 1.21957 1.00747 0.96448 0.99552 1.20947 1.33534 1.04549 0.97160 0.93382 1.25409 0.94325 0.95840 1.00658 1.69897 1.32458 1.19955 1.30928 0.85711 0.78466 0.78809 0.79612 1.21148 1.20465 1.19150 0.86760 0.86045 0.87472 0.87457 0.87708 0.90220 0.94788 0.93089 0.87832 0.89362 0.94322 0.92635 0.92740 0.90869 0.92252 0.91491 0.90096 0.93877 0.91346 0.96083 0.90559 0.96430 0.92642 0.90284 0.96777 0.92475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 14.32 67.78 0.97 -1.90 16 2 C -0.20 -5.73 9.10 25.65 0.23 -5.50 16 3 C 0.13 4.54 5.88 85.63 0.50 5.04 16 4 N -0.45 -18.23 2.79 -518.90 -1.45 -19.68 16 5 C 0.33 12.78 6.66 260.11 1.73 14.51 16 6 N -0.45 -13.50 4.73 -705.55 -3.33 -16.84 16 7 C 0.07 1.79 5.55 86.31 0.48 2.27 16 8 C 0.07 1.27 5.41 86.31 0.47 1.74 16 9 N -0.55 -10.05 4.53 -870.49 -3.94 -13.99 16 10 C 0.05 0.61 5.44 86.30 0.47 1.08 16 11 C -0.15 -1.65 9.84 71.98 0.71 -0.95 16 12 C 0.09 1.87 2.56 44.92 0.12 1.99 16 13 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 14 C -0.14 -2.24 8.89 71.98 0.64 -1.60 16 15 C 0.08 2.22 4.63 86.31 0.40 2.62 16 16 N -0.35 -16.23 11.78 -58.00 -0.68 -16.92 16 17 N -0.35 -17.50 11.50 -49.54 -0.57 -18.07 16 18 C 0.23 11.04 6.29 137.64 0.87 11.90 16 19 C 0.15 7.11 0.54 -53.67 -0.03 7.08 16 20 C -0.11 -5.44 7.76 71.98 0.56 -4.88 16 21 C -0.13 -5.90 8.19 71.98 0.59 -5.31 16 22 C -0.52 -26.53 6.37 25.60 0.16 -26.37 16 23 H 0.05 2.47 6.78 -2.91 -0.02 2.45 16 24 C 0.04 1.96 5.15 84.66 0.44 2.39 16 25 N -0.89 -46.21 9.36 21.45 0.20 -46.01 16 26 Si 0.95 40.37 29.54 68.60 2.03 42.40 16 27 H -0.29 -12.40 7.11 99.48 0.71 -11.69 16 28 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 29 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 30 H 0.11 1.99 7.83 -2.91 -0.02 1.97 16 31 H 0.12 2.02 8.06 -2.91 -0.02 1.99 16 32 H 0.11 3.48 5.58 -2.91 -0.02 3.46 16 33 H 0.11 3.11 7.78 -2.39 -0.02 3.09 16 34 H 0.10 4.02 5.50 -2.39 -0.01 4.01 16 35 H 0.08 2.04 8.13 -2.39 -0.02 2.02 16 36 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.10 1.56 6.34 -2.39 -0.02 1.54 16 39 H 0.09 1.03 5.73 -2.39 -0.01 1.01 16 40 H 0.04 0.48 8.12 -2.38 -0.02 0.46 16 41 H 0.05 0.62 6.49 -2.39 -0.02 0.61 16 42 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 43 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 44 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 46 H 0.08 0.96 6.15 -2.39 -0.01 0.95 16 47 H 0.04 1.38 8.00 -2.39 -0.02 1.36 16 48 H 0.07 2.03 8.13 -2.39 -0.02 2.01 16 49 H 0.02 1.01 8.13 -2.38 -0.02 0.99 16 50 H 0.08 4.04 6.09 -2.39 -0.01 4.02 16 51 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 52 H 0.05 2.32 3.99 -2.38 -0.01 2.31 16 53 H 0.08 3.89 6.06 -2.39 -0.01 3.88 16 54 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 55 H 0.27 13.12 8.31 -92.71 -0.77 12.35 16 Total: -1.00 -62.13 412.63 2.42 -59.71 By element: Atomic # 1 Polarization: 24.40 SS G_CDS: 0.87 Total: 25.27 kcal Atomic # 6 Polarization: -5.18 SS G_CDS: 9.30 Total: 4.12 kcal Atomic # 7 Polarization: -121.73 SS G_CDS: -9.78 Total: -131.51 kcal Atomic # 14 Polarization: 40.37 SS G_CDS: 2.03 Total: 42.40 kcal Total: -62.13 2.42 -59.71 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340428834.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.450 kcal (2) G-P(sol) polarization free energy of solvation -62.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds