Wall clock time and date at job start Wed Apr 1 2020 05:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50701 * 120.00203 * 2 1 4 4 N 1.46505 * 109.46797 * 129.07792 * 3 2 1 5 5 C 1.36448 * 127.13314 * 89.19976 * 4 3 2 6 6 N 1.38578 * 126.47967 * 0.03860 * 5 4 3 7 7 C 1.46956 * 110.99464 * 272.76614 * 6 5 4 8 8 C 1.53054 * 109.36518 * 176.80925 * 7 6 5 9 9 N 1.46959 * 109.36404 * 58.39904 * 8 7 6 10 10 C 1.46902 * 110.99862 * 176.81333 * 9 8 7 11 11 C 1.52998 * 109.47287 * 293.80225 * 10 9 8 12 12 C 1.46955 * 110.87820 * 300.68170 * 9 8 7 13 13 H 1.09003 * 109.48855 * 299.32863 * 12 9 8 14 14 C 1.52999 * 109.48825 * 179.29228 * 12 9 8 15 15 C 1.46950 * 111.00358 * 148.96446 * 6 5 4 16 16 N 1.31226 * 107.05027 * 179.76917 * 5 4 3 17 17 N 1.28520 * 109.85876 * 0.22543 * 16 5 4 18 18 C 1.30299 * 110.05685 * 359.97438 * 17 16 5 19 19 C 1.50698 * 126.34799 * 180.02562 * 18 17 16 20 20 C 1.53002 * 109.46932 * 115.05009 * 19 18 17 21 21 C 1.53004 * 109.47278 * 235.04950 * 19 18 17 22 22 C 1.50701 * 109.47353 * 355.05128 * 19 18 17 23 23 H 1.08004 * 119.99611 * 359.97438 * 22 19 18 24 24 C 1.37878 * 120.00380 * 179.97438 * 22 19 18 25 25 N 1.31516 * 119.99529 * 359.97438 * 24 22 19 26 26 Si 1.86792 * 120.00130 * 179.97438 * 24 22 19 27 27 H 1.48504 * 109.47062 * 89.99917 * 26 24 22 28 28 H 1.48498 * 109.47117 * 209.99700 * 26 24 22 29 29 H 1.48498 * 109.47373 * 330.00139 * 26 24 22 30 30 H 1.08004 * 120.00450 * 179.97438 * 1 2 3 31 31 H 1.08007 * 119.99752 * 0.02562 * 1 2 3 32 32 H 1.08007 * 119.99752 * 179.97438 * 2 1 3 33 33 H 1.09004 * 109.47104 * 9.08112 * 3 2 1 34 34 H 1.08999 * 109.46842 * 249.07498 * 3 2 1 35 35 H 1.09000 * 109.49100 * 56.84307 * 7 6 5 36 36 H 1.08994 * 109.51067 * 296.78581 * 7 6 5 37 37 H 1.09009 * 109.48724 * 298.43245 * 8 7 6 38 38 H 1.08995 * 109.49189 * 178.36704 * 8 7 6 39 39 H 1.09003 * 109.46860 * 53.80064 * 10 9 8 40 40 H 1.08998 * 109.46816 * 173.79759 * 10 9 8 41 41 H 1.08996 * 109.47515 * 59.99455 * 11 10 9 42 42 H 1.09002 * 109.47003 * 180.02562 * 11 10 9 43 43 H 1.08998 * 109.46578 * 299.99690 * 11 10 9 44 44 H 1.09004 * 109.47490 * 59.99456 * 14 12 9 45 45 H 1.08995 * 109.47529 * 180.02562 * 14 12 9 46 46 H 1.09007 * 109.46564 * 300.00107 * 14 12 9 47 47 H 1.09001 * 109.48969 * 63.22348 * 15 6 5 48 48 H 1.08996 * 109.49452 * 303.15364 * 15 6 5 49 49 H 1.09003 * 109.47080 * 66.57417 * 20 19 18 50 50 H 1.09004 * 109.47349 * 186.57276 * 20 19 18 51 51 H 1.08996 * 109.46866 * 306.57469 * 20 19 18 52 52 H 1.08994 * 109.47059 * 48.93491 * 21 19 18 53 53 H 1.08995 * 109.46898 * 168.93885 * 21 19 18 54 54 H 1.09000 * 109.46936 * 288.93341 * 21 19 18 55 55 H 0.97002 * 119.99664 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0617 1.2925 1.0723 5 6 4.3498 0.8493 0.9934 6 7 4.9719 0.3202 -0.1261 7 6 4.7429 -1.1283 -0.2206 8 6 5.3769 -1.6595 -1.5084 9 7 6.8147 -1.3557 -1.5050 10 6 7.4741 -1.9166 -2.6918 11 6 7.4281 -3.4445 -2.6265 12 6 7.0437 0.0929 -1.4105 13 1 6.5926 0.5891 -2.2699 14 6 8.5479 0.3717 -1.3917 15 6 6.4097 0.6240 -0.1227 16 7 4.8900 1.0240 2.1765 17 7 4.0273 1.5379 2.9787 18 6 2.8952 1.7206 2.3602 19 6 1.6370 2.3008 2.9529 20 6 1.3136 3.6280 2.2638 21 6 0.4781 1.3234 2.7466 22 6 1.8388 2.5367 4.4276 23 1 2.7836 2.2905 4.8895 24 6 0.8174 3.0666 5.1872 25 7 -0.3328 3.3668 4.6246 26 14 1.0674 3.3583 7.0152 27 1 1.6027 4.7268 7.2295 28 1 -0.2318 3.2189 7.7209 29 1 2.0299 2.3612 7.5485 30 1 -0.5401 -0.9353 -0.0004 31 1 -0.5400 0.9354 -0.0004 32 1 1.8500 -0.9354 0.0004 33 1 1.3664 2.1272 0.1622 34 1 2.5630 1.4362 -0.9599 35 1 3.6712 -1.3270 -0.2341 36 1 5.1939 -1.6250 0.6384 37 1 4.9065 -1.1830 -2.3687 38 1 5.2333 -2.7384 -1.5663 39 1 6.9581 -1.5757 -3.5894 40 1 8.5120 -1.5852 -2.7214 41 1 6.3902 -3.7759 -2.5968 42 1 7.9178 -3.8607 -3.5069 43 1 7.9442 -3.7854 -1.7289 44 1 8.9995 -0.0084 -2.3081 45 1 8.7175 1.4461 -1.3212 46 1 8.9985 -0.1241 -0.5319 47 1 6.8800 0.1476 0.7375 48 1 6.5533 1.7029 -0.0648 49 1 1.0534 3.4423 1.2217 50 1 0.4732 4.1044 2.7688 51 1 2.1838 4.2828 2.3098 52 1 0.7838 0.3258 3.0618 53 1 -0.3783 1.6451 3.3390 54 1 0.2034 1.3030 1.6920 55 1 -1.0513 3.7400 5.1589 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340428891.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:10 Heat of formation + Delta-G solvation = 112.242956 kcal Electronic energy + Delta-G solvation = -32949.118806 eV Core-core repulsion = 29023.265091 eV Total energy + Delta-G solvation = -3925.853715 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.238 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.90974 -40.69826 -38.01560 -37.32149 -36.44691 -33.87042 -33.68574 -33.20819 -31.90545 -29.71510 -28.32182 -27.99693 -27.49200 -27.25739 -26.68135 -23.86365 -23.49591 -22.89389 -22.04346 -21.07338 -20.75829 -20.54566 -18.53037 -17.80226 -17.32327 -17.25974 -16.82921 -16.66757 -16.21822 -16.09489 -15.56458 -15.42992 -15.37808 -15.03154 -14.87275 -14.64521 -14.50642 -13.63806 -13.58120 -13.51049 -13.30695 -13.15242 -13.06003 -12.99444 -12.93759 -12.73564 -12.67368 -12.54486 -12.44628 -12.29591 -12.18028 -12.08172 -12.00770 -11.87440 -11.81475 -11.76942 -11.49224 -11.36564 -11.01873 -10.68710 -10.48554 -10.34137 -10.17910 -9.45077 -9.29018 -8.04175 -6.15522 0.85334 1.05127 1.42619 1.44792 1.54827 1.62817 1.99805 2.47871 2.70757 2.81237 3.20861 3.61816 3.66220 3.78725 3.84822 3.86679 3.95288 4.07797 4.16498 4.18404 4.26005 4.29995 4.41407 4.47368 4.50466 4.54592 4.58132 4.66560 4.70748 4.75846 4.79492 4.81103 4.83629 4.90743 4.93412 4.96513 4.98939 5.08246 5.09592 5.16895 5.18579 5.29372 5.33909 5.41817 5.50061 5.56307 5.58035 5.60656 5.68833 5.79315 6.01828 6.07422 6.09199 6.14901 6.33392 6.43173 6.87597 7.49895 7.97034 8.96127 Molecular weight = 347.24amu Principal moments of inertia in cm(-1) A = 0.017434 B = 0.002968 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.663059 B = 9431.822317 C =10306.637991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.194 4.194 3 C 0.133 3.867 4 N -0.464 5.464 5 C 0.330 3.670 6 N -0.447 5.447 7 C 0.063 3.937 8 C 0.069 3.931 9 N -0.548 5.548 10 C 0.047 3.953 11 C -0.146 4.146 12 C 0.094 3.906 13 H 0.054 0.946 14 C -0.142 4.142 15 C 0.082 3.918 16 N -0.360 5.360 17 N -0.336 5.336 18 C 0.230 3.770 19 C 0.143 3.857 20 C -0.123 4.123 21 C -0.125 4.125 22 C -0.514 4.514 23 H 0.047 0.953 24 C 0.031 3.969 25 N -0.899 5.899 26 Si 0.944 3.056 27 H -0.279 1.279 28 H -0.276 1.276 29 H -0.284 1.284 30 H 0.123 0.877 31 H 0.109 0.891 32 H 0.112 0.888 33 H 0.102 0.898 34 H 0.118 0.882 35 H 0.085 0.915 36 H 0.032 0.968 37 H 0.052 0.948 38 H 0.104 0.896 39 H 0.039 0.961 40 H 0.088 0.912 41 H 0.055 0.945 42 H 0.073 0.927 43 H 0.053 0.947 44 H 0.081 0.919 45 H 0.067 0.933 46 H 0.057 0.943 47 H 0.041 0.959 48 H 0.071 0.929 49 H 0.043 0.957 50 H 0.083 0.917 51 H 0.013 0.987 52 H 0.008 0.992 53 H 0.075 0.925 54 H 0.062 0.938 55 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.762 -10.333 -21.388 24.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.213 4.213 3 C 0.012 3.988 4 N -0.156 5.156 5 C -0.027 4.027 6 N -0.172 5.172 7 C -0.064 4.064 8 C -0.060 4.060 9 N -0.275 5.275 10 C -0.080 4.080 11 C -0.204 4.204 12 C -0.015 4.015 13 H 0.072 0.928 14 C -0.199 4.199 15 C -0.046 4.046 16 N -0.203 5.203 17 N -0.173 5.173 18 C -0.039 4.039 19 C 0.140 3.860 20 C -0.181 4.181 21 C -0.183 4.183 22 C -0.552 4.552 23 H 0.065 0.935 24 C -0.168 4.168 25 N -0.538 5.538 26 Si 0.772 3.228 27 H -0.205 1.205 28 H -0.201 1.201 29 H -0.210 1.210 30 H 0.141 0.859 31 H 0.127 0.873 32 H 0.130 0.870 33 H 0.120 0.880 34 H 0.135 0.865 35 H 0.103 0.897 36 H 0.050 0.950 37 H 0.070 0.930 38 H 0.122 0.878 39 H 0.058 0.942 40 H 0.107 0.893 41 H 0.074 0.926 42 H 0.092 0.908 43 H 0.072 0.928 44 H 0.099 0.901 45 H 0.086 0.914 46 H 0.076 0.924 47 H 0.060 0.940 48 H 0.090 0.910 49 H 0.061 0.939 50 H 0.102 0.898 51 H 0.032 0.968 52 H 0.027 0.973 53 H 0.094 0.906 54 H 0.081 0.919 55 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 8.644 -10.270 -20.254 24.299 hybrid contribution -0.763 0.409 0.608 1.058 sum 7.882 -9.861 -19.646 23.352 Atomic orbital electron populations 1.24136 0.95131 1.03660 0.95086 1.22940 0.96667 0.97006 1.04668 1.21283 0.89880 0.98489 0.89108 1.46426 1.10878 1.46929 1.11391 1.22577 0.84743 1.03114 0.92296 1.59011 1.13556 1.14161 1.30480 1.22392 1.01357 0.83723 0.98910 1.22139 0.87341 1.01641 0.94830 1.62209 1.11461 1.12178 1.41616 1.22231 1.00001 0.96022 0.89743 1.21783 1.02112 0.94173 1.02302 1.21598 0.97031 0.87804 0.95086 0.92782 1.21856 0.92665 1.02243 1.03180 1.22141 0.83361 1.00609 0.98466 1.74436 1.26477 1.20222 0.99191 1.73987 0.99487 1.18398 1.25465 1.25886 0.98892 0.98477 0.80599 1.16837 0.83661 0.92014 0.93450 1.21802 1.01207 0.97509 0.97613 1.21981 0.99866 0.95604 1.00833 1.21189 0.99324 1.41732 0.92998 0.93508 1.25322 0.94922 0.95177 1.01369 1.69832 1.03710 1.43960 1.36297 0.85766 0.77306 0.78146 0.81627 1.20504 1.20079 1.20967 0.85884 0.87295 0.87034 0.87956 0.86452 0.89657 0.94974 0.92974 0.87835 0.94230 0.89345 0.92642 0.90841 0.92813 0.90078 0.91372 0.92389 0.94018 0.91019 0.93869 0.89823 0.96760 0.97279 0.90616 0.91934 0.92677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 12.30 67.78 0.83 -2.22 16 2 C -0.19 -4.75 9.04 25.65 0.23 -4.52 16 3 C 0.13 3.77 5.72 85.63 0.49 4.26 16 4 N -0.46 -17.61 2.79 -518.89 -1.45 -19.06 16 5 C 0.33 12.63 6.81 260.11 1.77 14.41 16 6 N -0.45 -13.01 4.73 -705.56 -3.33 -16.34 16 7 C 0.06 1.57 5.55 86.31 0.48 2.05 16 8 C 0.07 1.22 5.41 86.31 0.47 1.69 16 9 N -0.55 -9.93 4.53 -870.46 -3.94 -13.87 16 10 C 0.05 0.60 5.45 86.30 0.47 1.07 16 11 C -0.15 -1.64 9.85 71.98 0.71 -0.94 16 12 C 0.09 1.82 2.56 44.92 0.12 1.93 16 13 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 14 C -0.14 -2.20 8.89 71.98 0.64 -1.56 16 15 C 0.08 2.24 4.49 86.31 0.39 2.63 16 16 N -0.36 -16.90 11.55 -58.00 -0.67 -17.57 16 17 N -0.34 -17.73 11.00 -49.54 -0.54 -18.28 16 18 C 0.23 10.92 6.30 137.64 0.87 11.79 16 19 C 0.14 6.99 0.49 -53.67 -0.03 6.97 16 20 C -0.12 -5.62 8.19 71.98 0.59 -5.03 16 21 C -0.12 -5.55 7.60 71.98 0.55 -5.00 16 22 C -0.51 -28.98 7.91 25.60 0.20 -28.77 16 23 H 0.05 2.87 6.95 -2.91 -0.02 2.85 16 24 C 0.03 1.70 5.08 84.65 0.43 2.13 16 25 N -0.90 -47.51 9.31 21.45 0.20 -47.31 16 26 Si 0.94 44.69 29.54 68.60 2.03 46.72 16 27 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 28 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 29 H -0.28 -13.90 7.11 99.48 0.71 -13.19 16 30 H 0.12 2.15 8.06 -2.91 -0.02 2.13 16 31 H 0.11 2.29 7.15 -2.91 -0.02 2.27 16 32 H 0.11 2.66 6.12 -2.91 -0.02 2.64 16 33 H 0.10 2.94 4.44 -2.38 -0.01 2.93 16 34 H 0.12 2.80 8.14 -2.39 -0.02 2.78 16 35 H 0.09 2.01 6.13 -2.39 -0.01 2.00 16 36 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 38 H 0.10 1.51 6.34 -2.39 -0.02 1.50 16 39 H 0.04 0.47 8.12 -2.39 -0.02 0.45 16 40 H 0.09 1.01 5.73 -2.39 -0.01 1.00 16 41 H 0.05 0.61 6.49 -2.39 -0.02 0.60 16 42 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 43 H 0.05 0.72 8.14 -2.39 -0.02 0.71 16 44 H 0.08 0.94 6.15 -2.38 -0.01 0.93 16 45 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 46 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 47 H 0.04 1.34 7.98 -2.39 -0.02 1.32 16 48 H 0.07 2.09 8.13 -2.39 -0.02 2.07 16 49 H 0.04 1.64 5.63 -2.39 -0.01 1.62 16 50 H 0.08 4.14 5.92 -2.38 -0.01 4.12 16 51 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 52 H 0.01 0.38 8.10 -2.39 -0.02 0.36 16 53 H 0.08 3.72 5.86 -2.39 -0.01 3.71 16 54 H 0.06 2.27 2.79 -2.39 -0.01 2.26 16 55 H 0.26 13.32 8.31 -92.71 -0.77 12.55 16 Total: -1.00 -67.68 404.04 2.38 -65.31 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: 0.88 Total: 19.53 kcal Atomic # 6 Polarization: -8.34 SS G_CDS: 9.20 Total: 0.87 kcal Atomic # 7 Polarization: -122.69 SS G_CDS: -9.74 Total: -132.42 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -67.68 2.38 -65.31 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340428891.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.551 kcal (2) G-P(sol) polarization free energy of solvation -67.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds