Wall clock time and date at job start Wed Apr 1 2020 04:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50701 * 119.99928 * 2 1 4 4 N 1.46498 * 109.46928 * 125.21896 * 3 2 1 5 5 C 1.36740 * 127.13832 * 270.87523 * 4 3 2 6 6 C 1.50696 * 126.34791 * 359.96395 * 5 4 3 7 7 C 1.52998 * 109.47131 * 120.28972 * 6 5 4 8 8 C 1.53000 * 109.47067 * 185.00114 * 7 6 5 9 9 C 1.53001 * 109.47012 * 240.28674 * 6 5 4 10 10 C 1.53003 * 109.47001 * 64.99793 * 9 6 5 11 11 N 1.30305 * 107.30044 * 180.22702 * 5 4 3 12 12 N 1.28523 * 110.05532 * 359.76991 * 11 5 4 13 13 C 1.31213 * 109.86249 * 0.02562 * 12 11 5 14 14 N 1.38586 * 126.47480 * 179.97438 * 13 12 11 15 15 C 1.46957 * 111.00104 * 296.88364 * 14 13 12 16 16 C 1.53043 * 109.36336 * 183.18513 * 15 14 13 17 17 N 1.46954 * 109.36634 * 301.60028 * 16 15 14 18 18 C 1.46899 * 111.00152 * 183.18880 * 17 16 15 19 19 C 1.50699 * 109.47314 * 169.99909 * 18 17 16 20 20 H 1.07998 * 120.00156 * 0.02562 * 19 18 17 21 21 C 1.37876 * 120.00031 * 180.02562 * 19 18 17 22 22 N 1.31519 * 120.00239 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99884 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47367 * 90.00241 * 23 21 19 25 25 H 1.48506 * 109.47100 * 209.99726 * 23 21 19 26 26 H 1.48494 * 109.47056 * 330.00045 * 23 21 19 27 27 C 1.46957 * 110.88124 * 59.32021 * 17 16 15 28 28 C 1.46954 * 110.99808 * 60.68362 * 14 13 12 29 29 H 1.07997 * 119.99844 * 0.02562 * 1 2 3 30 30 H 1.07997 * 119.99842 * 179.97438 * 1 2 3 31 31 H 1.08002 * 119.99984 * 180.02562 * 2 1 3 32 32 H 1.09002 * 109.46978 * 5.22607 * 3 2 1 33 33 H 1.08994 * 109.47212 * 245.22468 * 3 2 1 34 34 H 1.09002 * 109.47034 * 0.28642 * 6 5 4 35 35 H 1.09001 * 109.46814 * 304.99821 * 7 6 5 36 36 H 1.09005 * 109.47383 * 65.00003 * 7 6 5 37 37 H 1.08994 * 109.47476 * 59.99416 * 8 7 6 38 38 H 1.09004 * 109.47167 * 179.97438 * 8 7 6 39 39 H 1.09001 * 109.47064 * 299.99553 * 8 7 6 40 40 H 1.08996 * 109.47221 * 184.99971 * 9 6 5 41 41 H 1.08999 * 109.47067 * 305.00357 * 9 6 5 42 42 H 1.08999 * 109.46750 * 60.00369 * 10 9 6 43 43 H 1.09003 * 109.47142 * 179.97438 * 10 9 6 44 44 H 1.08996 * 109.47278 * 300.00143 * 10 9 6 45 45 H 1.09005 * 109.48675 * 63.22069 * 15 14 13 46 46 H 1.08995 * 109.48590 * 303.15821 * 15 14 13 47 47 H 1.09003 * 109.48928 * 181.63412 * 16 15 14 48 48 H 1.09002 * 109.49215 * 61.57051 * 16 15 14 49 49 H 1.09002 * 109.47114 * 289.99757 * 18 17 16 50 50 H 1.08995 * 109.47191 * 50.00127 * 18 17 16 51 51 H 0.97001 * 119.99989 * 180.02562 * 22 21 19 52 52 H 1.09000 * 109.48932 * 60.64958 * 27 17 16 53 53 H 1.09004 * 109.49281 * 180.71205 * 27 17 16 54 54 H 1.09002 * 109.48887 * 296.78365 * 28 14 13 55 55 H 1.09002 * 109.49132 * 56.82130 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9975 1.3297 1.1284 5 6 2.7476 1.7736 2.3974 6 6 1.4459 2.3370 2.9064 7 6 0.9357 1.4766 4.0640 8 6 -0.4445 1.9732 4.4989 9 6 1.6669 3.7700 3.3949 10 6 2.0571 4.6578 2.2114 11 7 3.8454 1.6243 3.0833 12 7 4.7632 1.1157 2.3411 13 6 4.2966 0.9121 1.1317 14 7 4.9931 0.3784 0.0591 15 6 6.1200 1.2423 -0.3195 16 6 6.8132 0.6605 -1.5537 17 7 7.2750 -0.7025 -1.2560 18 6 8.0133 -1.2683 -2.3930 19 6 8.6772 -2.5537 -1.9713 20 1 8.5619 -2.9146 -0.9599 21 6 9.4319 -3.2692 -2.8766 22 7 9.5719 -2.8301 -4.1084 23 14 10.2542 -4.8630 -2.3540 24 1 9.3319 -6.0002 -2.6012 25 1 11.5005 -5.0572 -3.1379 26 1 10.5842 -4.7986 -0.9076 27 6 6.1481 -1.5664 -0.8774 28 6 5.4550 -0.9845 0.3568 29 1 -0.5400 0.9353 -0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8501 -0.9353 -0.0004 32 1 1.3589 2.1315 0.0936 33 1 2.6181 1.4045 -0.9330 34 1 0.7106 2.3367 2.1018 35 1 0.8629 0.4383 3.7403 36 1 1.6284 1.5480 4.9027 37 1 -1.1372 1.9019 3.6603 38 1 -0.8082 1.3599 5.3233 39 1 -0.3717 3.0115 4.8226 40 1 0.7479 4.1465 3.8441 41 1 2.4653 3.7820 4.1367 42 1 1.2586 4.6459 1.4696 43 1 2.2140 5.6788 2.5593 44 1 2.9760 4.2813 1.7622 45 1 6.8305 1.2956 0.5054 46 1 5.7510 2.2424 -0.5472 47 1 7.6670 1.2839 -1.8190 48 1 6.1103 0.6325 -2.3863 49 1 7.3221 -1.4680 -3.2118 50 1 8.7721 -0.5587 -2.7228 51 1 10.1026 -3.3337 -4.7454 52 1 5.4376 -1.6197 -1.7023 53 1 6.5170 -2.5665 -0.6496 54 1 6.1579 -0.9566 1.1894 55 1 4.6012 -1.6079 0.6225 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340696947.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:27 Heat of formation + Delta-G solvation = 84.410539 kcal Electronic energy + Delta-G solvation = -31911.461569 eV Core-core repulsion = 27984.400950 eV Total energy + Delta-G solvation = -3927.060619 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.238 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -44.11652 -40.32345 -38.07494 -37.18381 -36.60274 -34.57484 -33.70716 -32.64788 -32.08233 -31.27135 -29.54939 -27.93376 -27.32861 -26.66807 -24.68638 -23.93739 -23.70200 -23.16601 -22.43138 -21.26904 -20.75538 -20.24363 -18.57962 -18.46867 -17.66417 -17.39816 -16.68602 -16.46849 -16.01112 -15.95089 -15.77824 -15.58325 -15.46828 -15.28710 -15.00176 -14.82378 -14.58851 -14.48647 -14.01895 -13.64205 -13.52432 -13.26083 -13.18143 -12.91953 -12.80700 -12.73343 -12.66485 -12.60282 -12.48445 -12.36911 -12.30575 -12.25521 -12.18404 -11.87126 -11.83025 -11.67722 -11.48871 -11.42596 -11.25172 -11.09247 -10.62190 -10.54436 -10.03549 -9.96353 -9.07702 -8.21147 -6.30768 0.62161 0.90362 1.40664 1.42029 1.52649 1.53753 1.74114 2.39726 2.62478 3.10607 3.19028 3.24736 3.58380 3.68953 3.69600 3.79459 3.97453 4.00390 4.07155 4.14257 4.21477 4.24845 4.26237 4.33764 4.36107 4.43472 4.47079 4.52525 4.54917 4.63454 4.66546 4.71581 4.80709 4.85500 4.90375 4.94017 4.96833 5.01280 5.03138 5.09090 5.17774 5.20735 5.23268 5.24432 5.27746 5.41742 5.50886 5.52851 5.55107 5.58363 5.63723 5.68293 6.02874 6.17793 6.28483 6.57033 6.84340 7.38758 7.67574 8.89809 Molecular weight = 347.24amu Principal moments of inertia in cm(-1) A = 0.018960 B = 0.002312 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.438215 B =12108.635202 C =12305.411712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.200 4.200 3 C 0.137 3.863 4 N -0.455 5.455 5 C 0.205 3.795 6 C 0.007 3.993 7 C -0.109 4.109 8 C -0.146 4.146 9 C -0.112 4.112 10 C -0.150 4.150 11 N -0.323 5.323 12 N -0.346 5.346 13 C 0.342 3.658 14 N -0.458 5.458 15 C 0.085 3.915 16 C 0.062 3.938 17 N -0.548 5.548 18 C 0.211 3.789 19 C -0.524 4.524 20 H 0.061 0.939 21 C 0.004 3.996 22 N -0.932 5.932 23 Si 0.967 3.033 24 H -0.271 1.271 25 H -0.282 1.282 26 H -0.268 1.268 27 C 0.077 3.923 28 C 0.087 3.913 29 H 0.127 0.873 30 H 0.112 0.888 31 H 0.093 0.907 32 H 0.127 0.873 33 H 0.104 0.896 34 H 0.110 0.890 35 H 0.051 0.949 36 H 0.057 0.943 37 H 0.069 0.931 38 H 0.059 0.941 39 H 0.070 0.930 40 H 0.105 0.895 41 H 0.054 0.946 42 H 0.073 0.927 43 H 0.064 0.936 44 H 0.020 0.980 45 H 0.042 0.958 46 H 0.093 0.907 47 H 0.081 0.919 48 H 0.036 0.964 49 H -0.032 1.032 50 H 0.007 0.993 51 H 0.265 0.735 52 H 0.030 0.970 53 H 0.077 0.923 54 H 0.041 0.959 55 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.073 13.528 11.564 32.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.219 4.219 3 C 0.016 3.984 4 N -0.146 5.146 5 C -0.063 4.063 6 C -0.013 4.013 7 C -0.148 4.148 8 C -0.203 4.203 9 C -0.151 4.151 10 C -0.207 4.207 11 N -0.163 5.163 12 N -0.190 5.190 13 C -0.016 4.016 14 N -0.184 5.184 15 C -0.043 4.043 16 C -0.067 4.067 17 N -0.274 5.274 18 C 0.085 3.915 19 C -0.562 4.562 20 H 0.079 0.921 21 C -0.194 4.194 22 N -0.573 5.573 23 Si 0.792 3.208 24 H -0.197 1.197 25 H -0.207 1.207 26 H -0.192 1.192 27 C -0.052 4.052 28 C -0.041 4.041 29 H 0.145 0.855 30 H 0.131 0.869 31 H 0.111 0.889 32 H 0.145 0.855 33 H 0.122 0.878 34 H 0.128 0.872 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.089 0.911 40 H 0.124 0.876 41 H 0.073 0.927 42 H 0.092 0.908 43 H 0.083 0.917 44 H 0.039 0.961 45 H 0.060 0.940 46 H 0.111 0.889 47 H 0.100 0.900 48 H 0.054 0.946 49 H -0.015 1.015 50 H 0.026 0.974 51 H 0.073 0.927 52 H 0.048 0.952 53 H 0.095 0.905 54 H 0.059 0.941 55 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -26.002 13.528 12.520 31.873 hybrid contribution 0.505 -1.223 -1.450 1.963 sum -25.497 12.305 11.070 30.398 Atomic orbital electron populations 1.24186 0.94483 1.04103 0.94805 1.22922 0.96954 0.97127 1.04925 1.21199 0.91458 0.98364 0.87353 1.46572 1.10041 1.46231 1.11801 1.25433 0.99442 1.00452 0.80986 1.19977 0.86821 0.95501 0.99051 1.21461 0.98445 0.98230 0.96669 1.21801 0.94550 1.02034 1.01957 1.21640 1.03318 0.91764 0.98334 1.21775 1.00494 0.99919 0.98562 1.73901 0.98040 1.17905 1.26429 1.74585 1.24758 1.18289 1.01352 1.22361 0.85244 1.02088 0.91869 1.58987 1.26013 1.03469 1.29937 1.22107 0.89698 0.95381 0.97084 1.22110 0.98231 0.90847 0.95501 1.62187 1.23692 1.02086 1.39407 1.19337 0.91528 0.94144 0.86458 1.21436 1.30590 1.06789 0.97387 0.92100 1.25867 0.97092 1.01666 0.94817 1.70075 1.41431 1.40785 1.04971 0.85419 0.77906 0.79113 0.78407 1.19670 1.20712 1.19246 1.21914 0.90825 0.97099 0.95320 1.22079 0.98364 0.86422 0.97185 0.85528 0.86930 0.88913 0.85500 0.87759 0.87154 0.93013 0.92443 0.91201 0.92213 0.91139 0.87632 0.92699 0.90783 0.91716 0.96071 0.93966 0.88911 0.90024 0.94573 1.01473 0.97443 0.92652 0.95183 0.90465 0.94058 0.89702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 14.32 67.78 0.97 -0.27 16 2 C -0.20 -3.00 9.85 25.64 0.25 -2.74 16 3 C 0.14 2.11 6.31 85.63 0.54 2.65 16 4 N -0.46 -10.52 2.79 -518.91 -1.45 -11.97 16 5 C 0.21 4.75 5.56 137.63 0.76 5.52 16 6 C 0.01 0.10 2.23 -11.54 -0.03 0.08 16 7 C -0.11 -1.49 5.38 30.59 0.16 -1.32 16 8 C -0.15 -1.09 9.67 71.98 0.70 -0.39 16 9 C -0.11 -1.40 5.26 30.60 0.16 -1.23 16 10 C -0.15 -1.91 9.73 71.98 0.70 -1.21 16 11 N -0.32 -10.28 12.18 -49.54 -0.60 -10.89 16 12 N -0.35 -12.37 12.18 -58.00 -0.71 -13.08 16 13 C 0.34 10.45 6.45 260.11 1.68 12.13 16 14 N -0.46 -14.32 4.73 -705.56 -3.33 -17.65 16 15 C 0.08 2.72 5.54 86.31 0.48 3.20 16 16 C 0.06 2.25 5.61 86.31 0.48 2.73 16 17 N -0.55 -24.30 4.70 -900.31 -4.23 -28.53 16 18 C 0.21 11.31 4.72 85.56 0.40 11.71 16 19 C -0.52 -29.88 8.47 25.60 0.22 -29.66 16 20 H 0.06 3.44 7.13 -2.91 -0.02 3.41 16 21 C 0.00 0.22 5.46 84.65 0.46 0.68 16 22 N -0.93 -56.05 13.29 21.45 0.28 -55.77 16 23 Si 0.97 44.69 29.54 68.60 2.03 46.71 16 24 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 25 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 26 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 27 C 0.08 3.05 5.43 86.31 0.47 3.52 16 28 C 0.09 2.98 5.52 86.31 0.48 3.46 16 29 H 0.13 0.47 7.84 -2.91 -0.02 0.45 16 30 H 0.11 0.90 8.06 -2.91 -0.02 0.87 16 31 H 0.09 1.85 8.06 -2.91 -0.02 1.83 16 32 H 0.13 1.07 6.92 -2.39 -0.02 1.06 16 33 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.11 0.93 6.97 -2.39 -0.02 0.92 16 35 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 37 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 38 H 0.06 0.45 8.14 -2.38 -0.02 0.43 16 39 H 0.07 0.40 6.46 -2.39 -0.02 0.38 16 40 H 0.11 0.73 6.34 -2.39 -0.02 0.72 16 41 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 43 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.02 0.39 7.38 -2.39 -0.02 0.37 16 45 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 46 H 0.09 2.56 8.13 -2.39 -0.02 2.54 16 47 H 0.08 2.91 8.07 -2.39 -0.02 2.89 16 48 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 49 H -0.03 -1.86 8.12 -2.39 -0.02 -1.88 16 50 H 0.01 0.43 8.03 -2.39 -0.02 0.41 16 51 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 52 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 53 H 0.08 3.29 6.79 -2.38 -0.02 3.27 16 54 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 55 H 0.08 2.63 8.13 -2.39 -0.02 2.61 16 Total: -1.00 -72.71 434.66 1.71 -71.00 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: 0.83 Total: 11.34 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: 8.89 Total: 8.84 kcal Atomic # 7 Polarization: -127.85 SS G_CDS: -10.04 Total: -137.89 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.71 kcal Total: -72.71 1.71 -71.00 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340696947.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.406 kcal (2) G-P(sol) polarization free energy of solvation -72.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds