Wall clock time and date at job start Wed Apr 1 2020 05:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50701 * 119.99996 * 2 1 4 4 C 1.50700 * 120.00158 * 180.02562 * 2 1 3 5 5 N 1.46901 * 109.47126 * 94.99439 * 4 2 1 6 6 C 1.46911 * 110.99662 * 66.04826 * 5 4 2 7 7 C 1.38579 * 111.00356 * 190.00078 * 5 4 2 8 8 N 1.31222 * 126.47184 * 297.20907 * 7 5 4 9 9 N 1.28531 * 109.85954 * 179.73487 * 8 7 5 10 10 C 1.30292 * 110.05197 * 359.97438 * 9 8 7 11 11 C 1.50704 * 126.34694 * 180.02562 * 10 9 8 12 12 C 1.53120 * 109.51897 * 59.66416 * 11 10 9 13 13 C 1.53034 * 109.27573 * 182.44311 * 12 11 10 14 14 N 1.46849 * 109.52697 * 59.17594 * 13 12 11 15 15 C 1.46903 * 111.00033 * 174.15880 * 14 13 12 16 16 C 1.50692 * 109.47528 * 294.21126 * 15 14 13 17 17 H 1.08008 * 119.99708 * 359.97438 * 16 15 14 18 18 C 1.37873 * 120.00581 * 180.02562 * 16 15 14 19 19 N 1.31515 * 119.99726 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00462 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46996 * 59.99841 * 20 18 16 22 22 H 1.48501 * 109.47024 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47120 * 300.00035 * 20 18 16 24 24 C 1.46846 * 111.19606 * 298.25608 * 14 13 12 25 25 C 1.53036 * 109.51982 * 61.74496 * 24 14 13 26 26 N 1.36453 * 126.47295 * 116.88839 * 7 5 4 27 27 C 1.46495 * 127.13806 * 0.24605 * 26 7 5 28 28 C 1.52997 * 109.47000 * 96.89990 * 27 26 7 29 29 H 1.07999 * 120.00079 * 180.02562 * 1 2 3 30 30 H 1.07996 * 119.99633 * 359.97438 * 1 2 3 31 31 H 1.09001 * 109.47556 * 270.00362 * 3 2 1 32 32 H 1.09000 * 109.47323 * 30.00666 * 3 2 1 33 33 H 1.09004 * 109.47044 * 149.99967 * 3 2 1 34 34 H 1.09000 * 109.46644 * 335.00120 * 4 2 1 35 35 H 1.08995 * 109.47098 * 214.99826 * 4 2 1 36 36 H 1.08999 * 109.46551 * 176.46318 * 6 5 4 37 37 H 1.09000 * 109.46898 * 296.46401 * 6 5 4 38 38 H 1.08993 * 109.46905 * 56.46752 * 6 5 4 39 39 H 1.08997 * 109.52263 * 179.84602 * 11 10 9 40 40 H 1.09002 * 109.49890 * 302.37663 * 12 11 10 41 41 H 1.08993 * 109.51126 * 62.49990 * 12 11 10 42 42 H 1.08999 * 109.46437 * 299.15632 * 13 12 11 43 43 H 1.09001 * 109.45332 * 179.18671 * 13 12 11 44 44 H 1.08999 * 109.46614 * 54.21219 * 15 14 13 45 45 H 1.08997 * 109.46817 * 174.20541 * 15 14 13 46 46 H 0.96999 * 120.00513 * 179.97438 * 19 18 16 47 47 H 1.09000 * 109.46459 * 301.72555 * 24 14 13 48 48 H 1.09004 * 109.45224 * 181.74940 * 24 14 13 49 49 H 1.09007 * 109.50095 * 180.87769 * 25 24 14 50 50 H 1.08999 * 109.54173 * 60.78152 * 25 24 14 51 51 H 1.09000 * 109.47152 * 216.90176 * 27 26 7 52 52 H 1.08998 * 109.47072 * 336.90034 * 27 26 7 53 53 H 1.09004 * 109.47270 * 175.31169 * 28 27 26 54 54 H 1.08995 * 109.47368 * 295.30594 * 28 27 26 55 55 H 1.08997 * 109.47118 * 55.31005 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 7 2.4128 -1.6682 -1.3805 6 6 3.3708 -0.7112 -1.9502 7 6 2.9057 -2.9619 -1.4441 8 7 3.9962 -3.4103 -0.8682 9 7 4.1481 -4.6588 -1.1331 10 6 3.1715 -5.0775 -1.8870 11 6 2.9865 -6.4775 -2.4134 12 6 2.8787 -7.4552 -1.2400 13 6 2.7523 -8.8813 -1.7806 14 7 3.9275 -9.2011 -2.6011 15 6 3.9077 -10.6080 -3.0232 16 6 4.0544 -11.4970 -1.8153 17 1 4.1530 -11.0605 -0.8323 18 6 4.0640 -12.8676 -1.9651 19 7 3.9446 -13.3991 -3.1621 20 14 4.2466 -13.9696 -0.4678 21 1 3.1236 -13.7191 0.4710 22 1 4.2278 -15.3918 -0.8947 23 1 5.5341 -13.6738 0.2104 24 6 4.0253 -8.3052 -3.7605 25 6 4.1897 -6.8619 -3.2789 26 7 2.3455 -4.0114 -2.1124 27 6 1.1140 -3.9988 -2.9058 28 6 1.4623 -3.8226 -4.3851 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5399 0.9353 0.0004 31 1 2.2451 1.6199 -1.0276 32 1 1.4745 2.0648 0.5139 33 1 3.0159 1.1748 0.5139 34 1 1.4385 -2.0856 0.4334 35 1 2.9742 -1.1991 0.5889 36 1 3.6603 -1.0380 -2.9490 37 1 2.9083 0.2739 -2.0100 38 1 4.2546 -0.6598 -1.3145 39 1 2.0771 -6.5243 -3.0124 40 1 3.7717 -7.3790 -0.6197 41 1 1.9990 -7.2128 -0.6439 42 1 1.8518 -8.9604 -2.3896 43 1 2.6898 -9.5812 -0.9473 44 1 2.9627 -10.8247 -3.5212 45 1 4.7320 -10.7922 -3.7122 46 1 3.9516 -14.3633 -3.2676 47 1 3.1188 -8.3869 -4.3602 48 1 4.8874 -8.5867 -4.3651 49 1 4.2467 -6.1954 -4.1396 50 1 5.1034 -6.7756 -2.6909 51 1 0.5828 -4.9404 -2.7672 52 1 0.4809 -3.1732 -2.5808 53 1 0.5542 -3.8965 -4.9835 54 1 1.9188 -2.8446 -4.5370 55 1 2.1620 -4.6012 -4.6889 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342685804.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:49 Heat of formation + Delta-G solvation = 85.440404 kcal Electronic energy + Delta-G solvation = -31441.640048 eV Core-core repulsion = 27514.624087 eV Total energy + Delta-G solvation = -3927.015960 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.238 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -44.12279 -39.95839 -39.20668 -36.76498 -35.93494 -35.31172 -34.06046 -31.82439 -31.52287 -30.64790 -29.12954 -28.69404 -27.61891 -26.17617 -25.70777 -24.87272 -24.01026 -23.44956 -22.03188 -21.52176 -20.36231 -19.45588 -18.43619 -18.40768 -17.35686 -17.19918 -17.06239 -16.46887 -16.07557 -15.88878 -15.80552 -15.68279 -15.17348 -14.99938 -14.79449 -14.56977 -14.46255 -14.24818 -14.06579 -13.89326 -13.81943 -13.45480 -13.29155 -13.05378 -13.01186 -12.77185 -12.68587 -12.55165 -12.50933 -12.43760 -12.40890 -12.17699 -12.05967 -12.00356 -11.94936 -11.74333 -11.53164 -11.39471 -11.16824 -11.11216 -10.58524 -10.19122 -10.03665 -9.85724 -8.94339 -8.18307 -6.27624 0.61569 0.99777 1.41842 1.43928 1.45014 1.52707 1.72249 2.41796 2.74168 3.13323 3.16972 3.32219 3.55982 3.69427 3.76013 3.84152 3.92256 3.99379 4.04858 4.11413 4.25885 4.29885 4.32225 4.35384 4.43863 4.45352 4.49871 4.57407 4.58685 4.67578 4.69400 4.75902 4.76697 4.78534 4.82163 4.87189 4.92443 4.97995 5.02701 5.08146 5.13767 5.17450 5.18147 5.21210 5.23231 5.35156 5.43248 5.51971 5.53554 5.68082 5.69342 5.93562 6.09098 6.17320 6.39432 6.70219 6.88567 7.41741 7.65694 8.92193 Molecular weight = 347.24amu Principal moments of inertia in cm(-1) A = 0.021791 B = 0.002066 C = 0.002003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.616236 B =13552.043458 C =13978.623172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.136 4.136 3 C -0.120 4.120 4 C 0.104 3.896 5 N -0.451 5.451 6 C 0.034 3.966 7 C 0.340 3.660 8 N -0.347 5.347 9 N -0.319 5.319 10 C 0.203 3.797 11 C 0.012 3.988 12 C -0.091 4.091 13 C 0.071 3.929 14 N -0.549 5.549 15 C 0.209 3.791 16 C -0.523 4.523 17 H 0.060 0.940 18 C 0.002 3.998 19 N -0.933 5.933 20 Si 0.966 3.034 21 H -0.267 1.267 22 H -0.283 1.283 23 H -0.272 1.272 24 C 0.058 3.942 25 C -0.088 4.088 26 N -0.457 5.457 27 C 0.098 3.902 28 C -0.162 4.162 29 H 0.096 0.904 30 H 0.117 0.883 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.059 0.941 34 H 0.069 0.931 35 H 0.046 0.954 36 H 0.063 0.937 37 H 0.111 0.889 38 H 0.035 0.965 39 H 0.106 0.894 40 H 0.060 0.940 41 H 0.077 0.923 42 H 0.028 0.972 43 H 0.064 0.936 44 H -0.033 1.033 45 H 0.004 0.996 46 H 0.264 0.736 47 H 0.033 0.967 48 H 0.066 0.934 49 H 0.081 0.919 50 H 0.061 0.939 51 H 0.107 0.893 52 H 0.115 0.885 53 H 0.103 0.897 54 H 0.057 0.943 55 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.266 31.230 -0.018 33.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.136 4.136 3 C -0.176 4.176 4 C -0.023 4.023 5 N -0.177 5.177 6 C -0.113 4.113 7 C -0.017 4.017 8 N -0.191 5.191 9 N -0.158 5.158 10 C -0.066 4.066 11 C -0.009 4.009 12 C -0.130 4.130 13 C -0.057 4.057 14 N -0.274 5.274 15 C 0.083 3.917 16 C -0.561 4.561 17 H 0.079 0.921 18 C -0.196 4.196 19 N -0.573 5.573 20 Si 0.791 3.209 21 H -0.192 1.192 22 H -0.208 1.208 23 H -0.197 1.197 24 C -0.070 4.070 25 C -0.127 4.127 26 N -0.149 5.149 27 C -0.023 4.023 28 C -0.220 4.220 29 H 0.114 0.886 30 H 0.135 0.865 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.065 0.935 36 H 0.082 0.918 37 H 0.129 0.871 38 H 0.054 0.946 39 H 0.124 0.876 40 H 0.079 0.921 41 H 0.096 0.904 42 H 0.046 0.954 43 H 0.083 0.917 44 H -0.015 1.015 45 H 0.022 0.978 46 H 0.073 0.927 47 H 0.052 0.948 48 H 0.084 0.916 49 H 0.100 0.900 50 H 0.080 0.920 51 H 0.125 0.875 52 H 0.134 0.866 53 H 0.122 0.878 54 H 0.076 0.924 55 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.034 31.169 0.694 32.752 hybrid contribution -0.708 -1.294 -0.232 1.493 sum -10.742 29.876 0.462 31.752 Atomic orbital electron populations 1.23892 0.94822 1.02760 0.98365 1.21487 0.95581 0.94196 1.02352 1.20994 1.00070 0.93721 1.02822 1.21183 0.99129 0.96074 0.85874 1.59001 1.41629 0.95306 1.21741 1.22615 0.93550 0.96063 0.99067 1.22600 0.91770 0.90282 0.97088 1.74527 1.16660 1.04707 1.23241 1.73986 1.21953 1.04164 1.15723 1.24887 0.89564 0.92397 0.99742 1.19674 1.00732 0.83579 0.96884 1.21501 1.02492 0.92482 0.96539 1.21876 0.90602 0.95879 0.97365 1.61919 1.40848 1.04090 1.20531 1.19343 0.93425 0.83993 0.94979 1.21440 1.49235 0.91214 0.94215 0.92144 1.25867 0.94993 0.99690 0.99005 1.70067 1.51571 1.11972 1.23720 0.85488 0.79025 0.77229 0.79186 1.19183 1.20791 1.19706 1.22040 1.00344 0.92463 0.92130 1.21456 0.97384 0.94830 0.99009 1.46643 1.22117 1.07594 1.38581 1.22220 0.82442 1.06158 0.91444 1.22112 1.03968 1.02351 0.93528 0.88596 0.86482 0.90283 0.90569 0.92198 0.91243 0.93536 0.91796 0.87115 0.94581 0.87555 0.92107 0.90405 0.95404 0.91734 1.01500 0.97801 0.92727 0.94846 0.91590 0.90033 0.92018 0.87466 0.86636 0.87789 0.92350 0.92766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.57 13.89 67.78 0.94 -0.63 16 2 C -0.14 -1.58 5.10 -16.49 -0.08 -1.66 16 3 C -0.12 -0.98 9.02 71.24 0.64 -0.34 16 4 C 0.10 1.75 5.08 85.56 0.43 2.19 16 5 N -0.45 -8.15 4.71 -735.27 -3.46 -11.61 16 6 C 0.03 0.52 8.96 127.69 1.14 1.66 16 7 C 0.34 8.35 6.37 260.11 1.66 10.00 16 8 N -0.35 -11.13 12.19 -58.00 -0.71 -11.84 16 9 N -0.32 -10.92 12.18 -49.53 -0.60 -11.52 16 10 C 0.20 5.61 6.58 137.64 0.91 6.51 16 11 C 0.01 0.32 2.63 -11.46 -0.03 0.29 16 12 C -0.09 -2.83 5.36 30.65 0.16 -2.67 16 13 C 0.07 2.69 5.29 86.32 0.46 3.15 16 14 N -0.55 -23.85 4.65 -900.94 -4.19 -28.04 16 15 C 0.21 11.17 4.72 85.55 0.40 11.57 16 16 C -0.52 -29.95 8.43 25.60 0.22 -29.73 16 17 H 0.06 3.43 7.12 -2.91 -0.02 3.41 16 18 C 0.00 0.14 5.46 84.65 0.46 0.60 16 19 N -0.93 -56.27 13.29 21.45 0.28 -55.99 16 20 Si 0.97 44.89 29.54 68.60 2.03 46.91 16 21 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 22 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 23 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 24 C 0.06 2.04 5.46 86.33 0.47 2.52 16 25 C -0.09 -2.57 5.36 30.65 0.16 -2.41 16 26 N -0.46 -10.11 2.81 -514.86 -1.45 -11.55 16 27 C 0.10 1.32 6.48 86.38 0.56 1.88 16 28 C -0.16 -1.85 10.24 71.98 0.74 -1.11 16 29 H 0.10 0.97 7.99 -2.91 -0.02 0.95 16 30 H 0.12 0.77 8.04 -2.91 -0.02 0.74 16 31 H 0.08 0.50 6.51 -2.39 -0.02 0.49 16 32 H 0.08 0.47 8.06 -2.39 -0.02 0.45 16 33 H 0.06 0.55 8.09 -2.39 -0.02 0.53 16 34 H 0.07 1.29 7.90 -2.39 -0.02 1.28 16 35 H 0.05 0.91 8.05 -2.39 -0.02 0.89 16 36 H 0.06 1.02 8.09 -2.39 -0.02 1.00 16 37 H 0.11 1.11 5.27 -2.39 -0.01 1.09 16 38 H 0.04 0.64 8.10 -2.39 -0.02 0.62 16 39 H 0.11 2.26 7.12 -2.39 -0.02 2.24 16 40 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 41 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 42 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.06 2.74 6.70 -2.39 -0.02 2.72 16 44 H -0.03 -1.86 8.12 -2.39 -0.02 -1.88 16 45 H 0.00 0.22 7.99 -2.39 -0.02 0.21 16 46 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 47 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 48 H 0.07 2.37 8.02 -2.38 -0.02 2.36 16 49 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 50 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 51 H 0.11 1.18 7.54 -2.39 -0.02 1.16 16 52 H 0.12 1.27 8.07 -2.39 -0.02 1.25 16 53 H 0.10 0.70 8.14 -2.38 -0.02 0.68 16 54 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 55 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -72.46 433.47 1.99 -70.47 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: 0.84 Total: 11.33 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: 9.25 Total: 1.84 kcal Atomic # 7 Polarization: -120.43 SS G_CDS: -10.12 Total: -130.55 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.91 kcal Total: -72.46 1.99 -70.47 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342685804.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.910 kcal (2) G-P(sol) polarization free energy of solvation -72.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds