Wall clock time and date at job start Wed Apr 1 2020 05:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50703 * 119.99923 * 2 1 4 4 C 1.50699 * 120.00141 * 179.97438 * 2 1 3 5 5 N 1.46504 * 109.47223 * 95.06098 * 4 2 1 6 6 C 1.36739 * 127.13729 * 95.16611 * 5 4 2 7 7 C 1.50703 * 126.34858 * 0.06651 * 6 5 4 8 8 H 1.09002 * 109.47125 * 359.97438 * 7 6 5 9 9 C 1.53001 * 109.47349 * 119.99486 * 7 6 5 10 10 C 1.52998 * 109.46802 * 239.99631 * 7 6 5 11 11 C 1.50704 * 109.47133 * 175.00121 * 10 7 6 12 12 H 1.08004 * 119.99577 * 359.97438 * 11 10 7 13 13 C 1.37878 * 120.00115 * 179.97438 * 11 10 7 14 14 N 1.31512 * 119.99824 * 359.97438 * 13 11 10 15 15 Si 1.86807 * 119.99856 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47006 * 89.99829 * 15 13 11 17 17 H 1.48500 * 109.46835 * 209.99889 * 15 13 11 18 18 H 1.48503 * 109.46960 * 330.00188 * 15 13 11 19 19 N 1.30290 * 107.30771 * 180.02562 * 6 5 4 20 20 N 1.28533 * 110.04987 * 359.73456 * 19 6 5 21 21 C 1.31214 * 109.86047 * 0.44980 * 20 19 6 22 22 N 1.38576 * 126.47405 * 179.82323 * 21 20 19 23 23 C 1.46961 * 111.00017 * 342.46578 * 22 21 20 24 24 C 1.53045 * 109.38317 * 183.17762 * 23 22 21 25 25 N 1.46962 * 109.36291 * 301.62910 * 24 23 22 26 26 C 1.46903 * 110.99845 * 183.17081 * 25 24 23 27 27 C 1.53000 * 109.47310 * 66.17392 * 26 25 24 28 28 C 1.46952 * 110.89764 * 59.28987 * 25 24 23 29 29 C 1.46960 * 111.00066 * 106.25787 * 22 21 20 30 30 H 1.08000 * 120.00169 * 0.02562 * 1 2 3 31 31 H 1.08000 * 119.99994 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46985 * 265.13097 * 3 2 1 33 33 H 1.09005 * 109.47352 * 25.12784 * 3 2 1 34 34 H 1.08993 * 109.47507 * 145.12927 * 3 2 1 35 35 H 1.08995 * 109.47047 * 335.06153 * 4 2 1 36 36 H 1.09005 * 109.47185 * 215.05864 * 4 2 1 37 37 H 1.08994 * 109.47020 * 59.99735 * 9 7 6 38 38 H 1.09005 * 109.47008 * 180.02562 * 9 7 6 39 39 H 1.08998 * 109.46787 * 299.99672 * 9 7 6 40 40 H 1.09002 * 109.47339 * 294.99283 * 10 7 6 41 41 H 1.09001 * 109.47698 * 54.99853 * 10 7 6 42 42 H 0.97002 * 119.99349 * 179.97438 * 14 13 11 43 43 H 1.09004 * 109.48321 * 303.15363 * 23 22 21 44 44 H 1.09002 * 109.49172 * 63.19561 * 23 22 21 45 45 H 1.09000 * 109.49213 * 61.57127 * 24 23 22 46 46 H 1.08997 * 109.49088 * 181.64018 * 24 23 22 47 47 H 1.08999 * 109.47147 * 186.18094 * 26 25 24 48 48 H 1.09009 * 109.47004 * 306.17578 * 26 25 24 49 49 H 1.09000 * 109.46869 * 60.00283 * 27 26 25 50 50 H 1.09001 * 109.46805 * 179.97438 * 27 26 25 51 51 H 1.09000 * 109.47333 * 299.99945 * 27 26 25 52 52 H 1.09003 * 109.48940 * 180.72590 * 28 25 24 53 53 H 1.08997 * 109.51049 * 60.66815 * 28 25 24 54 54 H 1.08997 * 109.49508 * 296.78222 * 29 22 21 55 55 H 1.09012 * 109.48527 * 56.82858 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 7 2.4132 -1.6677 -1.3751 6 6 3.5906 -1.4128 -2.0221 7 6 4.7882 -0.6994 -1.4496 8 1 4.5791 -0.4067 -0.4206 9 6 6.0000 -1.6329 -1.4785 10 6 5.0854 0.5483 -2.2838 11 6 6.2042 1.3272 -1.6415 12 1 6.6576 0.9684 -0.7292 13 6 6.6490 2.4978 -2.2184 14 7 6.0973 2.9344 -3.3295 15 14 8.0354 3.4637 -1.4217 16 1 9.3379 2.9952 -1.9596 17 1 7.8674 4.9086 -1.7205 18 1 8.0031 3.2551 0.0482 19 7 3.4855 -1.9019 -3.2252 20 7 2.3327 -2.4491 -3.3792 21 6 1.6314 -2.3291 -2.2768 22 7 0.3423 -2.7921 -2.0660 23 6 -0.3290 -3.0799 -3.3412 24 6 -1.7719 -3.5117 -3.0694 25 7 -1.7705 -4.6957 -2.1988 26 6 -3.1370 -5.1865 -1.9754 27 6 -3.7135 -5.7078 -3.2933 28 6 -1.0992 -4.4079 -0.9237 29 6 0.3438 -3.9764 -1.1959 30 1 -0.5400 0.9353 -0.0004 31 1 -0.5400 -0.9353 -0.0004 32 1 2.3207 1.5762 -1.0240 33 1 1.4394 2.0851 0.4364 34 1 2.9753 1.1983 0.5875 35 1 1.4382 -2.0854 0.4342 36 1 2.9737 -1.1988 0.5909 37 1 6.2089 -1.9252 -2.5076 38 1 6.8661 -1.1170 -1.0640 39 1 5.7882 -2.5217 -0.8842 40 1 5.3809 0.2507 -3.2899 41 1 4.1926 1.1713 -2.3366 42 1 6.4100 3.7581 -3.7351 43 1 -0.3283 -2.1844 -3.9627 44 1 0.1993 -3.8814 -3.8576 45 1 -2.3080 -2.6999 -2.5778 46 1 -2.2628 -3.7537 -4.0121 47 1 -3.1181 -5.9932 -1.2427 48 1 -3.7592 -4.3724 -1.6035 49 1 -3.0914 -6.5219 -3.6652 50 1 -4.7273 -6.0724 -3.1274 51 1 -3.7325 -4.9011 -4.0260 52 1 -1.0999 -5.3033 -0.3021 53 1 -1.6272 -3.6063 -0.4072 54 1 0.8795 -4.7884 -1.6876 55 1 0.8353 -3.7346 -0.2534 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342953090.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:38 Heat of formation + Delta-G solvation = 85.574053 kcal Electronic energy + Delta-G solvation = -32387.635065 eV Core-core repulsion = 28460.624900 eV Total energy + Delta-G solvation = -3927.010165 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.238 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -44.03700 -40.46667 -37.90142 -37.40825 -36.55546 -34.51467 -34.11404 -32.44274 -31.78765 -30.00092 -28.84850 -28.53023 -27.90750 -26.87139 -25.88927 -24.94567 -23.58594 -22.96079 -22.24897 -21.20957 -20.46457 -19.72168 -18.63338 -18.32791 -17.44399 -17.30295 -16.49305 -16.39817 -16.19383 -16.04215 -15.82177 -15.57105 -15.48603 -15.13231 -15.02343 -14.93131 -14.35451 -14.21164 -14.06196 -13.66945 -13.53422 -13.05588 -13.04218 -12.96539 -12.86136 -12.80606 -12.76549 -12.71198 -12.45748 -12.39936 -12.31044 -12.26641 -12.24011 -11.95672 -11.88831 -11.61957 -11.50885 -11.48235 -11.15514 -11.02635 -10.54832 -10.52641 -10.18923 -9.40931 -9.29260 -8.14502 -6.25790 0.68482 0.93759 1.43667 1.45360 1.55003 1.56852 1.84362 2.44144 2.64723 2.85600 3.19658 3.45173 3.53806 3.65373 3.70647 3.87058 3.91361 3.97057 4.11588 4.17586 4.23379 4.27186 4.32012 4.38034 4.43308 4.46600 4.54733 4.55715 4.63522 4.66317 4.66823 4.74346 4.78288 4.81297 4.83485 4.90809 4.95900 5.02936 5.06602 5.09645 5.11789 5.15105 5.17834 5.36312 5.40299 5.49343 5.50525 5.57527 5.60872 5.71509 5.80132 5.85959 6.03743 6.09107 6.20011 6.23477 6.89823 7.43081 7.79177 8.97857 Molecular weight = 347.24amu Principal moments of inertia in cm(-1) A = 0.019944 B = 0.002607 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.592377 B =10738.381738 C =11174.573596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.168 4.168 3 C -0.114 4.114 4 C 0.142 3.858 5 N -0.466 5.466 6 C 0.206 3.794 7 C 0.011 3.989 8 H 0.093 0.907 9 C -0.120 4.120 10 C 0.056 3.944 11 C -0.523 4.523 12 H 0.076 0.924 13 C -0.001 4.001 14 N -0.936 5.936 15 Si 0.963 3.037 16 H -0.276 1.276 17 H -0.289 1.289 18 H -0.254 1.254 19 N -0.330 5.330 20 N -0.361 5.361 21 C 0.351 3.649 22 N -0.442 5.442 23 C 0.077 3.923 24 C 0.068 3.932 25 N -0.554 5.554 26 C 0.054 3.946 27 C -0.149 4.149 28 C 0.068 3.932 29 C 0.058 3.942 30 H 0.108 0.892 31 H 0.117 0.883 32 H 0.030 0.970 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.125 0.875 36 H 0.111 0.889 37 H 0.038 0.962 38 H 0.075 0.925 39 H 0.062 0.938 40 H -0.016 1.016 41 H -0.020 1.020 42 H 0.260 0.740 43 H 0.069 0.931 44 H 0.045 0.955 45 H 0.049 0.951 46 H 0.098 0.902 47 H 0.086 0.914 48 H 0.040 0.960 49 H 0.054 0.946 50 H 0.072 0.928 51 H 0.052 0.948 52 H 0.106 0.894 53 H 0.055 0.945 54 H 0.039 0.961 55 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.783 -15.569 12.100 28.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.169 4.169 3 C -0.171 4.171 4 C 0.022 3.978 5 N -0.159 5.159 6 C -0.063 4.063 7 C -0.010 4.010 8 H 0.111 0.889 9 C -0.178 4.178 10 C 0.018 3.982 11 C -0.561 4.561 12 H 0.094 0.906 13 C -0.199 4.199 14 N -0.577 5.577 15 Si 0.788 3.212 16 H -0.202 1.202 17 H -0.215 1.215 18 H -0.178 1.178 19 N -0.168 5.168 20 N -0.205 5.205 21 C -0.006 4.006 22 N -0.167 5.167 23 C -0.050 4.050 24 C -0.060 4.060 25 N -0.280 5.280 26 C -0.073 4.073 27 C -0.206 4.206 28 C -0.061 4.061 29 C -0.069 4.069 30 H 0.127 0.873 31 H 0.135 0.865 32 H 0.048 0.952 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.143 0.857 36 H 0.129 0.871 37 H 0.058 0.942 38 H 0.094 0.906 39 H 0.081 0.919 40 H 0.003 0.997 41 H -0.001 1.001 42 H 0.069 0.931 43 H 0.088 0.912 44 H 0.063 0.937 45 H 0.067 0.933 46 H 0.116 0.884 47 H 0.104 0.896 48 H 0.058 0.942 49 H 0.073 0.927 50 H 0.091 0.909 51 H 0.071 0.929 52 H 0.124 0.876 53 H 0.073 0.927 54 H 0.058 0.942 55 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -20.447 -15.858 10.586 27.957 hybrid contribution 0.556 1.508 0.609 1.719 sum -19.891 -14.349 11.195 26.960 Atomic orbital electron populations 1.23984 0.94311 1.03258 0.95747 1.21765 0.96166 0.94588 1.04355 1.20792 1.00583 0.95035 1.00708 1.21201 1.02325 0.96251 0.78066 1.46450 1.12187 1.43103 1.14147 1.25300 0.89867 1.01152 0.89977 1.19730 0.87736 0.94418 0.99139 0.88938 1.21608 0.96917 0.97821 1.01413 1.18791 0.94945 0.90553 0.93907 1.21541 1.17879 1.06814 1.09904 0.90586 1.25983 0.99553 0.98935 0.95403 1.70161 1.43815 1.22920 1.20782 0.85470 0.78982 0.77193 0.79545 1.20151 1.21503 1.17769 1.73912 1.12507 1.14765 1.15618 1.74449 1.00530 1.22756 1.22720 1.22668 0.91492 0.98973 0.87481 1.59086 1.06741 1.33086 1.17799 1.22054 0.94596 1.00488 0.87883 1.22144 0.93572 0.91384 0.98934 1.62192 1.19073 1.31982 1.14729 1.22102 0.86823 0.99546 0.98870 1.21797 1.00846 1.01237 0.96752 1.22145 0.91372 1.01477 0.91059 1.22454 0.99253 0.88678 0.96475 0.87346 0.86459 0.95151 0.90249 0.91458 0.85721 0.87131 0.94239 0.90642 0.91856 0.99731 1.00133 0.93094 0.91208 0.93672 0.93300 0.88368 0.89599 0.94162 0.92706 0.90933 0.92912 0.87562 0.92670 0.94241 0.88836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 13.88 67.78 0.94 -1.75 16 2 C -0.17 -4.09 5.63 -16.48 -0.09 -4.18 16 3 C -0.11 -3.34 10.05 71.24 0.72 -2.62 16 4 C 0.14 3.32 6.10 85.63 0.52 3.84 16 5 N -0.47 -15.24 2.79 -518.91 -1.45 -16.69 16 6 C 0.21 8.49 6.58 137.64 0.91 9.39 16 7 C 0.01 0.44 2.70 -11.54 -0.03 0.41 16 8 H 0.09 3.40 6.82 -2.39 -0.02 3.38 16 9 C -0.12 -4.52 8.99 71.98 0.65 -3.88 16 10 C 0.06 3.02 4.43 29.85 0.13 3.15 16 11 C -0.52 -28.54 8.41 25.60 0.22 -28.33 16 12 H 0.08 3.79 7.06 -2.91 -0.02 3.77 16 13 C 0.00 -0.07 5.46 84.66 0.46 0.39 16 14 N -0.94 -58.16 13.29 21.45 0.28 -57.88 16 15 Si 0.96 43.58 29.54 68.60 2.03 45.60 16 16 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 17 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 18 H -0.25 -10.59 7.11 99.48 0.71 -9.88 16 19 N -0.33 -15.55 12.18 -49.54 -0.60 -16.16 16 20 N -0.36 -15.33 11.40 -58.01 -0.66 -15.99 16 21 C 0.35 11.81 6.93 260.12 1.80 13.61 16 22 N -0.44 -10.85 4.73 -705.52 -3.33 -14.19 16 23 C 0.08 1.88 5.05 86.31 0.44 2.32 16 24 C 0.07 1.14 5.41 86.31 0.47 1.60 16 25 N -0.55 -8.16 4.71 -895.70 -4.22 -12.38 16 26 C 0.05 0.56 5.68 86.30 0.49 1.05 16 27 C -0.15 -1.50 9.85 71.98 0.71 -0.79 16 28 C 0.07 0.86 5.61 86.31 0.48 1.35 16 29 C 0.06 1.08 5.49 86.31 0.47 1.55 16 30 H 0.11 1.99 7.99 -2.91 -0.02 1.97 16 31 H 0.12 1.95 7.99 -2.91 -0.02 1.93 16 32 H 0.03 1.15 7.85 -2.39 -0.02 1.13 16 33 H 0.08 1.95 7.99 -2.38 -0.02 1.93 16 34 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.12 2.06 6.03 -2.39 -0.01 2.05 16 36 H 0.11 2.38 7.00 -2.38 -0.02 2.36 16 37 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.07 2.81 6.95 -2.38 -0.02 2.79 16 39 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 40 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 41 H -0.02 -1.18 7.85 -2.39 -0.02 -1.20 16 42 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 43 H 0.07 1.94 8.13 -2.39 -0.02 1.92 16 44 H 0.04 1.28 8.04 -2.39 -0.02 1.26 16 45 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 46 H 0.10 1.47 6.34 -2.39 -0.02 1.45 16 47 H 0.09 0.72 8.03 -2.39 -0.02 0.70 16 48 H 0.04 0.39 8.12 -2.38 -0.02 0.37 16 49 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 50 H 0.07 0.53 8.14 -2.39 -0.02 0.52 16 51 H 0.05 0.57 6.49 -2.39 -0.02 0.55 16 52 H 0.11 0.96 8.07 -2.39 -0.02 0.94 16 53 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 54 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 55 H 0.09 1.45 6.20 -2.38 -0.01 1.44 16 Total: -1.00 -75.32 430.73 2.17 -73.15 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: 0.85 Total: 17.41 kcal Atomic # 6 Polarization: -12.16 SS G_CDS: 9.28 Total: -2.88 kcal Atomic # 7 Polarization: -123.30 SS G_CDS: -9.98 Total: -133.28 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.60 kcal Total: -75.32 2.17 -73.15 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342953090.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.721 kcal (2) G-P(sol) polarization free energy of solvation -75.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds