Wall clock time and date at job start Wed Apr 1 2020 05:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50707 * 119.99839 * 2 1 4 4 C 1.50698 * 120.00076 * 179.97438 * 2 1 3 5 5 N 1.46501 * 109.47026 * 94.97211 * 4 2 1 6 6 C 1.36745 * 127.13475 * 95.34450 * 5 4 2 7 7 C 1.50701 * 126.34681 * 0.04550 * 6 5 4 8 8 H 1.09005 * 109.47027 * 0.25397 * 7 6 5 9 9 C 1.53000 * 109.46897 * 240.25665 * 7 6 5 10 10 C 1.53002 * 109.47149 * 120.25549 * 7 6 5 11 11 C 1.50696 * 109.46924 * 184.99905 * 10 7 6 12 12 H 1.08001 * 120.00122 * 0.02562 * 11 10 7 13 13 C 1.37879 * 120.00272 * 179.97438 * 11 10 7 14 14 N 1.31521 * 119.99601 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00601 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46876 * 0.02562 * 15 13 11 17 17 H 1.48491 * 109.47234 * 120.00067 * 15 13 11 18 18 H 1.48497 * 109.47398 * 240.00636 * 15 13 11 19 19 N 1.30287 * 107.30554 * 180.27947 * 6 5 4 20 20 N 1.28531 * 110.05637 * 359.76434 * 19 6 5 21 21 C 1.31221 * 109.85646 * 359.97438 * 20 19 6 22 22 N 1.38577 * 126.46959 * 179.97438 * 21 20 19 23 23 C 1.46954 * 110.99854 * 106.70852 * 22 21 20 24 24 C 1.53050 * 109.36894 * 176.80789 * 23 22 21 25 25 N 1.46962 * 109.36014 * 58.40257 * 24 23 22 26 26 C 1.46901 * 110.99694 * 176.81453 * 25 24 23 27 27 C 1.52995 * 109.47411 * 313.79454 * 26 25 24 28 28 C 1.46962 * 110.87834 * 300.67914 * 25 24 23 29 29 C 1.46953 * 111.00351 * 342.90992 * 22 21 20 30 30 H 1.08006 * 120.00079 * 0.02562 * 1 2 3 31 31 H 1.08002 * 120.00112 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.46570 * 265.18647 * 3 2 1 33 33 H 1.08992 * 109.47187 * 25.18522 * 3 2 1 34 34 H 1.08994 * 109.46713 * 145.18758 * 3 2 1 35 35 H 1.09003 * 109.47072 * 334.98162 * 4 2 1 36 36 H 1.08995 * 109.47029 * 214.97476 * 4 2 1 37 37 H 1.08995 * 109.46999 * 299.99572 * 9 7 6 38 38 H 1.08998 * 109.47026 * 59.99931 * 9 7 6 39 39 H 1.09006 * 109.46689 * 179.97438 * 9 7 6 40 40 H 1.08996 * 109.46887 * 304.99578 * 10 7 6 41 41 H 1.08994 * 109.46798 * 65.00264 * 10 7 6 42 42 H 0.96993 * 119.99712 * 179.97438 * 14 13 11 43 43 H 1.09002 * 109.48778 * 296.78015 * 23 22 21 44 44 H 1.09004 * 109.49042 * 56.84226 * 23 22 21 45 45 H 1.08993 * 109.48811 * 298.43889 * 24 23 22 46 46 H 1.08991 * 109.49258 * 178.36543 * 24 23 22 47 47 H 1.09000 * 109.47148 * 73.80183 * 26 25 24 48 48 H 1.09003 * 109.46697 * 193.79625 * 26 25 24 49 49 H 1.09003 * 109.47340 * 300.00955 * 27 26 25 50 50 H 1.09007 * 109.46809 * 59.99946 * 27 26 25 51 51 H 1.08992 * 109.47061 * 180.02562 * 27 26 25 52 52 H 1.09002 * 109.49009 * 299.35243 * 28 25 24 53 53 H 1.08996 * 109.50163 * 179.30070 * 28 25 24 54 54 H 1.09003 * 109.48807 * 303.15191 * 29 22 21 55 55 H 1.08994 * 109.49111 * 63.19859 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.0635 -1.3051 0.0006 5 7 2.4113 -1.6687 -1.3753 6 6 3.5891 -1.4173 -2.0230 7 6 4.7889 -0.7069 -1.4512 8 1 4.5829 -0.4178 -0.4205 9 6 5.0853 0.5432 -2.2820 10 6 5.9997 -1.6416 -1.4864 11 6 7.1674 -0.9770 -0.8040 12 1 7.0568 0.0129 -0.3865 13 6 8.3766 -1.6330 -0.7116 14 7 8.5111 -2.8386 -1.2196 15 14 9.8243 -0.8089 0.1336 16 1 9.4163 0.5352 0.6158 17 1 10.2607 -1.6364 1.2868 18 1 10.9463 -0.6703 -0.8291 19 7 3.4799 -1.9012 -3.2277 20 7 2.3240 -2.4415 -3.3826 21 6 1.6283 -2.3308 -2.2755 22 7 0.3393 -2.7929 -2.0630 23 6 0.3414 -3.9794 -1.1960 24 6 -1.1013 -4.4101 -0.9215 25 7 -1.7759 -4.6939 -2.1959 26 6 -3.1424 -5.1838 -1.9705 27 6 -3.1269 -6.2533 -0.8766 28 6 -1.7781 -3.5073 -3.0629 29 6 -0.3353 -3.0767 -3.3373 30 1 -0.5400 0.9354 -0.0004 31 1 -0.5400 -0.9353 -0.0004 32 1 2.3198 1.5767 -1.0241 33 1 1.4398 2.0848 0.4373 34 1 2.9758 1.1979 0.5867 35 1 1.4387 -2.0852 0.4356 36 1 2.9744 -1.1984 0.5896 37 1 5.2913 0.2541 -3.3125 38 1 4.2227 1.2090 -2.2569 39 1 5.9528 1.0572 -1.8681 40 1 5.7571 -2.5700 -0.9694 41 1 6.2602 -1.8597 -2.5221 42 1 9.3618 -3.3000 -1.1550 43 1 0.8752 -4.7906 -1.6911 44 1 0.8351 -3.7406 -0.2539 45 1 -1.6274 -3.6092 -0.4021 46 1 -1.1016 -5.3071 -0.3024 47 1 -3.7788 -4.3552 -1.6597 48 1 -3.5310 -5.6139 -2.8937 49 1 -2.4904 -7.0818 -1.1875 50 1 -2.7382 -5.8232 0.0465 51 1 -4.1407 -6.6171 -0.7098 52 1 -2.3119 -2.6961 -2.5678 53 1 -2.2719 -3.7459 -4.0049 54 1 -0.3351 -2.1796 -3.9565 55 1 0.1909 -3.8774 -3.8570 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342953091.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:42 Heat of formation + Delta-G solvation = 87.515216 kcal Electronic energy + Delta-G solvation = -32337.027078 eV Core-core repulsion = 28410.101089 eV Total energy + Delta-G solvation = -3926.925990 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.238 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -44.04767 -40.51788 -37.89600 -37.45946 -36.60046 -34.49003 -34.15658 -32.37790 -31.90034 -29.92353 -28.90993 -28.38872 -27.93627 -27.01455 -25.95842 -24.88097 -23.76232 -22.91821 -22.19321 -21.14923 -20.47555 -19.71161 -18.61214 -18.36366 -17.57473 -17.24018 -16.52185 -16.41516 -16.13743 -16.03809 -15.85121 -15.69014 -15.55320 -15.20251 -14.99573 -14.96602 -14.32567 -14.14730 -14.06402 -13.64531 -13.55636 -13.14049 -13.04778 -12.95482 -12.90576 -12.81524 -12.77079 -12.64823 -12.48052 -12.37807 -12.32247 -12.24830 -12.13230 -11.94858 -11.93902 -11.69754 -11.63989 -11.38850 -11.17574 -11.00344 -10.59714 -10.52773 -10.16892 -9.42507 -9.28430 -8.16088 -6.27736 0.72201 0.87976 1.43424 1.44625 1.57082 1.58538 1.82154 2.43685 2.63862 2.85212 3.18086 3.44065 3.52267 3.63098 3.70297 3.86649 3.89348 3.96811 4.10803 4.16961 4.23056 4.26431 4.29446 4.36197 4.42605 4.43724 4.52206 4.53511 4.62688 4.66013 4.66646 4.71073 4.77399 4.82260 4.83990 4.92721 4.95594 5.02138 5.05154 5.06743 5.09473 5.17009 5.21901 5.33696 5.35001 5.45317 5.48438 5.57396 5.60393 5.69556 5.82186 5.84090 6.03432 6.07187 6.18310 6.21815 6.88267 7.41488 7.77895 8.96678 Molecular weight = 347.24amu Principal moments of inertia in cm(-1) A = 0.014630 B = 0.002720 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.386990 B =10292.588206 C =10943.347946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.167 4.167 3 C -0.117 4.117 4 C 0.138 3.862 5 N -0.465 5.465 6 C 0.206 3.794 7 C 0.013 3.987 8 H 0.092 0.908 9 C -0.117 4.117 10 C 0.050 3.950 11 C -0.525 4.525 12 H 0.077 0.923 13 C -0.003 4.003 14 N -0.937 5.937 15 Si 0.966 3.034 16 H -0.252 1.252 17 H -0.282 1.282 18 H -0.284 1.284 19 N -0.329 5.329 20 N -0.359 5.359 21 C 0.349 3.651 22 N -0.437 5.437 23 C 0.056 3.944 24 C 0.066 3.934 25 N -0.557 5.557 26 C 0.053 3.947 27 C -0.155 4.155 28 C 0.070 3.930 29 C 0.077 3.923 30 H 0.117 0.883 31 H 0.108 0.892 32 H 0.050 0.950 33 H 0.084 0.916 34 H 0.066 0.934 35 H 0.114 0.886 36 H 0.102 0.898 37 H 0.038 0.962 38 H 0.060 0.940 39 H 0.075 0.925 40 H -0.022 1.022 41 H -0.012 1.012 42 H 0.261 0.739 43 H 0.032 0.968 44 H 0.087 0.913 45 H 0.057 0.943 46 H 0.105 0.895 47 H 0.043 0.957 48 H 0.080 0.920 49 H 0.054 0.946 50 H 0.062 0.938 51 H 0.073 0.927 52 H 0.054 0.946 53 H 0.100 0.900 54 H 0.079 0.921 55 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.775 1.918 6.271 28.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.168 4.168 3 C -0.174 4.174 4 C 0.017 3.983 5 N -0.158 5.158 6 C -0.063 4.063 7 C -0.008 4.008 8 H 0.111 0.889 9 C -0.175 4.175 10 C 0.012 3.988 11 C -0.563 4.563 12 H 0.095 0.905 13 C -0.200 4.200 14 N -0.578 5.578 15 Si 0.791 3.209 16 H -0.175 1.175 17 H -0.207 1.207 18 H -0.211 1.211 19 N -0.167 5.167 20 N -0.203 5.203 21 C -0.008 4.008 22 N -0.163 5.163 23 C -0.071 4.071 24 C -0.062 4.062 25 N -0.283 5.283 26 C -0.073 4.073 27 C -0.213 4.213 28 C -0.058 4.058 29 C -0.051 4.051 30 H 0.135 0.865 31 H 0.126 0.874 32 H 0.069 0.931 33 H 0.103 0.897 34 H 0.085 0.915 35 H 0.132 0.868 36 H 0.120 0.880 37 H 0.057 0.943 38 H 0.079 0.921 39 H 0.094 0.906 40 H -0.004 1.004 41 H 0.007 0.993 42 H 0.070 0.930 43 H 0.051 0.949 44 H 0.105 0.895 45 H 0.075 0.925 46 H 0.123 0.877 47 H 0.061 0.939 48 H 0.098 0.902 49 H 0.073 0.927 50 H 0.081 0.919 51 H 0.092 0.908 52 H 0.072 0.928 53 H 0.118 0.882 54 H 0.098 0.902 55 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -27.344 1.395 4.840 27.804 hybrid contribution 1.018 0.106 1.113 1.512 sum -26.327 1.501 5.953 27.033 Atomic orbital electron populations 1.23994 0.94380 1.03258 0.95653 1.21746 0.96081 0.94462 1.04469 1.20870 1.00653 0.94231 1.01641 1.21181 1.02044 0.96957 0.78070 1.46445 1.12129 1.43125 1.14075 1.25299 0.89348 1.01663 0.89976 1.19703 0.87235 0.95070 0.98771 0.88948 1.21584 1.01651 0.95198 0.99026 1.18852 0.91726 0.92933 0.95266 1.21587 0.95734 1.02764 1.36184 0.90468 1.26023 1.02218 0.95385 0.96416 1.70166 1.25962 1.14545 1.47122 0.85379 0.78495 0.79195 0.77871 1.17522 1.20749 1.21053 1.73909 1.11774 1.14642 1.16416 1.74458 1.00484 1.22557 1.22808 1.22685 0.91588 0.99046 0.87500 1.59100 1.06701 1.32542 1.17940 1.22446 0.99441 0.88812 0.96402 1.22214 0.91031 1.01334 0.91652 1.62229 1.18995 1.32258 1.14828 1.22114 0.87367 0.97656 1.00205 1.21926 1.02754 0.98562 0.98016 1.22130 0.93691 0.91286 0.98739 1.22085 0.94441 1.00785 0.87777 0.86512 0.87379 0.93085 0.89729 0.91482 0.86838 0.87961 0.94264 0.92064 0.90629 1.00385 0.99331 0.93010 0.94938 0.89509 0.92479 0.87688 0.93882 0.90198 0.92651 0.91942 0.90812 0.92794 0.88179 0.90238 0.94145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.21 13.88 67.78 0.94 -1.27 16 2 C -0.17 -3.39 5.64 -16.48 -0.09 -3.48 16 3 C -0.12 -2.32 10.05 71.24 0.72 -1.61 16 4 C 0.14 3.34 6.11 85.63 0.52 3.86 16 5 N -0.46 -15.44 2.79 -518.92 -1.45 -16.89 16 6 C 0.21 8.54 6.58 137.64 0.91 9.45 16 7 C 0.01 0.55 2.70 -11.54 -0.03 0.52 16 8 H 0.09 3.42 6.82 -2.38 -0.02 3.40 16 9 C -0.12 -4.45 8.98 71.98 0.65 -3.80 16 10 C 0.05 2.72 4.43 29.85 0.13 2.85 16 11 C -0.52 -28.73 8.41 25.60 0.22 -28.52 16 12 H 0.08 3.87 7.06 -2.91 -0.02 3.85 16 13 C 0.00 -0.17 5.46 84.65 0.46 0.29 16 14 N -0.94 -58.27 13.29 21.45 0.28 -57.99 16 15 Si 0.97 43.57 29.54 68.60 2.03 45.59 16 16 H -0.25 -10.44 7.11 99.48 0.71 -9.73 16 17 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 18 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 19 N -0.33 -15.56 12.18 -49.54 -0.60 -16.17 16 20 N -0.36 -15.34 11.40 -58.01 -0.66 -16.00 16 21 C 0.35 11.89 6.94 260.11 1.80 13.70 16 22 N -0.44 -10.98 4.73 -705.56 -3.33 -14.31 16 23 C 0.06 1.22 5.49 86.31 0.47 1.69 16 24 C 0.07 0.99 4.93 86.31 0.43 1.41 16 25 N -0.56 -8.84 4.86 -895.72 -4.35 -13.20 16 26 C 0.05 0.60 6.00 86.30 0.52 1.11 16 27 C -0.16 -1.47 9.18 71.98 0.66 -0.81 16 28 C 0.07 1.13 5.58 86.31 0.48 1.61 16 29 C 0.08 1.82 5.05 86.31 0.44 2.25 16 30 H 0.12 1.55 7.99 -2.91 -0.02 1.52 16 31 H 0.11 1.65 7.99 -2.91 -0.02 1.63 16 32 H 0.05 1.18 7.75 -2.38 -0.02 1.16 16 33 H 0.08 1.29 7.99 -2.39 -0.02 1.27 16 34 H 0.07 1.34 8.13 -2.39 -0.02 1.32 16 35 H 0.11 2.22 6.06 -2.39 -0.01 2.21 16 36 H 0.10 2.51 6.99 -2.39 -0.02 2.49 16 37 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.06 1.96 7.75 -2.39 -0.02 1.94 16 39 H 0.07 2.83 6.95 -2.38 -0.02 2.82 16 40 H -0.02 -1.33 8.14 -2.39 -0.02 -1.35 16 41 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 42 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 43 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.09 1.74 6.23 -2.39 -0.01 1.72 16 45 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 46 H 0.11 1.32 5.99 -2.39 -0.01 1.30 16 47 H 0.04 0.42 8.08 -2.39 -0.02 0.40 16 48 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 49 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 50 H 0.06 0.54 6.26 -2.38 -0.01 0.53 16 51 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 52 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 53 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 54 H 0.08 2.00 8.13 -2.39 -0.02 1.98 16 55 H 0.04 1.17 8.04 -2.39 -0.02 1.15 16 Total: -1.00 -74.90 429.44 1.97 -72.92 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: 0.85 Total: 16.77 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: 9.22 Total: -0.74 kcal Atomic # 7 Polarization: -124.44 SS G_CDS: -10.12 Total: -134.55 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal Total: -74.90 1.97 -72.92 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342953091.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.438 kcal (2) G-P(sol) polarization free energy of solvation -74.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds