Wall clock time and date at job start Wed Apr 1 2020 04:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50703 * 120.00069 * 2 1 4 4 C 1.50704 * 120.00068 * 179.97438 * 2 1 3 5 5 N 1.46499 * 109.47074 * 265.36914 * 4 2 1 6 6 C 1.36732 * 127.13833 * 264.85062 * 5 4 2 7 7 C 1.50704 * 126.34864 * 359.95038 * 6 5 4 8 8 H 1.08998 * 109.50015 * 0.07473 * 7 6 5 9 9 C 1.53123 * 109.50279 * 120.19428 * 7 6 5 10 10 C 1.53122 * 109.15724 * 177.59736 * 9 7 6 11 11 C 1.53038 * 109.27689 * 302.34248 * 10 9 7 12 12 N 1.46848 * 109.52422 * 59.18096 * 11 10 9 13 13 C 1.46897 * 111.00056 * 174.16011 * 12 11 10 14 14 C 1.46843 * 111.19779 * 298.25835 * 12 11 10 15 15 N 1.30293 * 107.30452 * 179.97438 * 6 5 4 16 16 N 1.28531 * 110.05600 * 0.02562 * 15 6 5 17 17 C 1.31216 * 109.85584 * 359.74074 * 16 15 6 18 18 N 1.38583 * 126.47229 * 180.26058 * 17 16 15 19 19 C 1.46901 * 110.99587 * 258.85323 * 18 17 16 20 20 C 1.46899 * 110.99920 * 22.80091 * 18 17 16 21 21 H 1.08992 * 109.47505 * 300.00296 * 20 18 17 22 22 C 1.53003 * 109.46740 * 60.00795 * 20 18 17 23 23 C 1.50699 * 109.46985 * 179.97438 * 20 18 17 24 24 H 1.08003 * 120.00032 * 0.02562 * 23 20 18 25 25 C 1.37873 * 120.00050 * 180.02562 * 23 20 18 26 26 N 1.31512 * 120.00030 * 0.02562 * 25 23 20 27 27 Si 1.86801 * 120.00154 * 180.02562 * 25 23 20 28 28 H 1.48505 * 109.46962 * 60.00370 * 27 25 23 29 29 H 1.48497 * 109.47117 * 180.02562 * 27 25 23 30 30 H 1.48498 * 109.47167 * 300.00233 * 27 25 23 31 31 H 1.08001 * 119.99909 * 0.02562 * 1 2 3 32 32 H 1.08002 * 119.99742 * 179.72642 * 1 2 3 33 33 H 1.08992 * 109.47600 * 85.10831 * 3 2 1 34 34 H 1.09004 * 109.47419 * 205.10983 * 3 2 1 35 35 H 1.08998 * 109.46688 * 325.10685 * 3 2 1 36 36 H 1.08998 * 109.47235 * 25.37516 * 4 2 1 37 37 H 1.09003 * 109.47003 * 145.36940 * 4 2 1 38 38 H 1.08998 * 109.51864 * 297.49889 * 9 7 6 39 39 H 1.08996 * 109.52442 * 57.68963 * 9 7 6 40 40 H 1.08999 * 109.50315 * 182.40525 * 10 9 7 41 41 H 1.08997 * 109.53626 * 62.30417 * 10 9 7 42 42 H 1.09003 * 109.46080 * 299.16772 * 11 10 9 43 43 H 1.08995 * 109.46472 * 179.19914 * 11 10 9 44 44 H 1.09002 * 109.47341 * 184.20510 * 13 12 11 45 45 H 1.08997 * 109.47591 * 304.21278 * 13 12 11 46 46 H 1.09004 * 109.47362 * 64.21234 * 13 12 11 47 47 H 1.08998 * 109.46463 * 301.72600 * 14 12 11 48 48 H 1.09004 * 109.46334 * 181.76188 * 14 12 11 49 49 H 1.08995 * 109.47603 * 66.08760 * 19 18 17 50 50 H 1.09002 * 109.46884 * 186.09124 * 19 18 17 51 51 H 1.09001 * 109.47133 * 306.08722 * 19 18 17 52 52 H 1.08992 * 109.47529 * 59.99515 * 22 20 18 53 53 H 1.09001 * 109.46984 * 179.97438 * 22 20 18 54 54 H 1.09005 * 109.46598 * 299.99516 * 22 20 18 55 55 H 0.97006 * 120.00075 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 7 2.4043 -1.6716 1.3774 6 6 3.5772 -1.4184 2.0329 7 6 4.7782 -0.7026 1.4705 8 1 4.5760 -0.4059 0.4414 9 6 5.0733 0.5411 2.3135 10 6 6.3297 1.2288 1.7720 11 6 7.4975 0.2400 1.7971 12 7 7.1664 -0.9315 0.9759 13 6 8.3168 -1.8381 0.8641 14 6 5.9910 -1.6354 1.5044 15 7 3.4642 -1.9110 3.2338 16 7 2.3088 -2.4546 3.3804 17 6 1.6149 -2.3320 2.2734 18 7 0.3252 -2.7893 2.0547 19 6 0.3339 -4.0417 1.2870 20 6 -0.3970 -2.9546 3.3233 21 1 0.1282 -3.6760 3.9491 22 6 -0.4700 -1.6088 4.0475 23 6 -1.7924 -3.4514 3.0458 24 1 -2.1108 -3.6272 2.0289 25 6 -2.6626 -3.6814 4.0902 26 7 -2.2751 -3.4668 5.3285 27 14 -4.3922 -4.2979 3.7464 28 1 -4.3214 -5.6044 3.0440 29 1 -5.1226 -4.4636 5.0286 30 1 -5.1075 -3.3152 2.8932 31 1 -0.5400 0.9353 -0.0004 32 1 -0.5400 -0.9353 -0.0045 33 1 2.1693 1.6636 1.0238 34 1 3.0511 1.1545 -0.4361 35 1 1.5152 2.0412 -0.5879 36 1 1.4411 -2.0842 -0.4395 37 1 2.9775 -1.1972 -0.5835 38 1 4.2290 1.2281 2.2571 39 1 5.2368 0.2479 3.3505 40 1 6.5695 2.0910 2.3942 41 1 6.1527 1.5570 0.7478 42 1 7.6832 -0.0767 2.8234 43 1 8.3902 0.7221 1.3988 44 1 8.0687 -2.6587 0.1907 45 1 9.1735 -1.2913 0.4703 46 1 8.5618 -2.2374 1.8483 47 1 6.1838 -1.9433 2.5320 48 1 5.7896 -2.5154 0.8935 49 1 0.7904 -4.8310 1.8843 50 1 -0.6894 -4.3214 1.0364 51 1 0.9071 -3.9021 0.3705 52 1 -0.9951 -0.8874 3.4217 53 1 -1.0062 -1.7312 4.9886 54 1 0.5393 -1.2490 4.2481 55 1 -2.8875 -3.6283 6.0633 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001343966428.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:30 Heat of formation + Delta-G solvation = 94.210838 kcal Electronic energy + Delta-G solvation = -32976.960722 eV Core-core repulsion = 29050.325076 eV Total energy + Delta-G solvation = -3926.635646 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.238 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.97865 -40.00420 -38.77290 -37.76107 -35.13188 -34.82567 -34.19553 -32.65733 -31.23635 -29.93679 -28.43717 -27.89482 -27.64332 -27.30281 -26.07030 -24.84909 -23.78248 -23.51704 -21.86326 -21.43183 -20.26856 -19.68392 -18.45738 -17.85523 -17.49404 -16.97535 -16.76460 -16.47289 -15.98548 -15.87195 -15.72130 -15.46706 -15.30847 -15.15652 -14.97160 -14.54600 -14.27439 -14.20807 -14.04010 -13.73458 -13.52093 -13.18370 -13.11832 -13.03419 -12.89228 -12.76067 -12.67011 -12.60293 -12.51147 -12.39627 -12.28869 -12.19453 -12.11555 -12.03757 -11.75172 -11.62006 -11.47350 -11.41154 -11.07169 -10.93986 -10.56661 -10.25628 -10.10342 -9.35362 -9.15586 -8.12551 -6.27769 0.75967 1.00650 1.44458 1.47116 1.54371 1.70166 1.90032 2.41996 2.85470 3.06927 3.19499 3.42498 3.60190 3.72500 3.76805 3.81294 4.02224 4.06990 4.15859 4.22433 4.28884 4.37963 4.43295 4.53175 4.54018 4.56490 4.58445 4.66264 4.69799 4.74897 4.80317 4.81153 4.83256 4.86184 4.95781 4.96806 5.02058 5.03961 5.04562 5.07425 5.08245 5.14488 5.18632 5.20744 5.42785 5.44908 5.57931 5.64408 5.65987 5.87087 5.92178 5.99353 6.02686 6.11750 6.16425 6.62796 6.82681 7.41217 7.88191 8.94321 Molecular weight = 347.24amu Principal moments of inertia in cm(-1) A = 0.016852 B = 0.003004 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.092954 B = 9319.361535 C = 9885.424199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.168 4.168 3 C -0.108 4.108 4 C 0.143 3.857 5 N -0.464 5.464 6 C 0.183 3.817 7 C 0.022 3.978 8 H 0.114 0.886 9 C -0.108 4.108 10 C -0.105 4.105 11 C 0.049 3.951 12 N -0.540 5.540 13 C 0.024 3.976 14 C 0.074 3.926 15 N -0.326 5.326 16 N -0.369 5.369 17 C 0.370 3.630 18 N -0.453 5.453 19 C 0.045 3.955 20 C 0.245 3.755 21 H -0.026 1.026 22 C -0.111 4.111 23 C -0.524 4.524 24 H 0.075 0.925 25 C 0.012 3.988 26 N -0.921 5.921 27 Si 0.969 3.031 28 H -0.267 1.267 29 H -0.289 1.289 30 H -0.267 1.267 31 H 0.109 0.891 32 H 0.094 0.906 33 H 0.048 0.952 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.101 0.899 37 H 0.128 0.872 38 H 0.065 0.935 39 H 0.048 0.952 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.024 0.976 43 H 0.097 0.903 44 H 0.072 0.928 45 H 0.088 0.912 46 H 0.019 0.981 47 H 0.023 0.977 48 H 0.072 0.928 49 H 0.012 0.988 50 H 0.093 0.907 51 H 0.080 0.920 52 H 0.027 0.973 53 H 0.062 0.938 54 H 0.010 0.990 55 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.573 9.751 -16.921 26.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.169 4.169 3 C -0.165 4.165 4 C 0.022 3.978 5 N -0.158 5.158 6 C -0.086 4.086 7 C 0.001 3.999 8 H 0.132 0.868 9 C -0.147 4.147 10 C -0.143 4.143 11 C -0.078 4.078 12 N -0.265 5.265 13 C -0.124 4.124 14 C -0.055 4.055 15 N -0.165 5.165 16 N -0.212 5.212 17 C 0.013 3.987 18 N -0.178 5.178 19 C -0.102 4.102 20 C 0.139 3.861 21 H -0.008 1.008 22 C -0.169 4.169 23 C -0.562 4.562 24 H 0.093 0.907 25 C -0.187 4.187 26 N -0.560 5.560 27 Si 0.793 3.207 28 H -0.191 1.191 29 H -0.215 1.215 30 H -0.192 1.192 31 H 0.127 0.873 32 H 0.112 0.888 33 H 0.067 0.933 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.120 0.880 37 H 0.146 0.854 38 H 0.083 0.917 39 H 0.067 0.933 40 H 0.104 0.896 41 H 0.105 0.895 42 H 0.042 0.958 43 H 0.115 0.885 44 H 0.090 0.910 45 H 0.106 0.894 46 H 0.038 0.962 47 H 0.042 0.958 48 H 0.091 0.909 49 H 0.031 0.969 50 H 0.112 0.888 51 H 0.098 0.902 52 H 0.046 0.954 53 H 0.081 0.919 54 H 0.029 0.971 55 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 17.494 9.836 -16.079 25.716 hybrid contribution -1.134 -1.180 0.891 1.863 sum 16.360 8.656 -15.188 23.942 Atomic orbital electron populations 1.24005 0.95677 1.02649 0.96284 1.21870 0.95547 0.95579 1.03893 1.20815 1.00780 0.93364 1.01541 1.21164 1.02512 0.96102 0.78000 1.46487 1.12427 1.42937 1.13917 1.25118 0.90041 1.03321 0.90147 1.19606 0.86111 0.93783 1.00371 0.86780 1.21579 0.99411 0.95122 0.98551 1.21558 0.92396 0.97478 1.02858 1.22243 0.99255 0.91360 0.94966 1.61965 1.04869 1.08693 1.50947 1.22419 0.93043 0.96741 1.00195 1.21881 0.89895 0.95692 0.98059 1.73815 1.12240 1.14232 1.16179 1.74683 1.00707 1.22989 1.22819 1.22873 0.91229 0.97716 0.86911 1.59114 1.04712 1.30281 1.23669 1.22337 1.03960 0.87662 0.96227 1.18879 0.91756 0.93002 0.82447 1.00827 1.21536 0.97156 0.97111 1.01102 1.21328 0.96601 1.44443 0.93858 0.90661 1.25799 1.02806 0.95514 0.94606 1.70080 1.37328 1.49122 0.99466 0.85451 0.78843 0.79117 0.77259 1.19139 1.21482 1.19162 0.87305 0.88754 0.93278 0.89913 0.90214 0.88045 0.85371 0.91666 0.93341 0.89620 0.89491 0.95782 0.88479 0.90969 0.89368 0.96209 0.95826 0.90913 0.96944 0.88803 0.90170 0.95405 0.91942 0.97096 0.92857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.76 13.91 67.78 0.94 -2.82 16 2 C -0.17 -3.80 5.64 -16.48 -0.09 -3.89 16 3 C -0.11 -1.89 10.02 71.24 0.71 -1.17 16 4 C 0.14 3.25 6.13 85.63 0.52 3.78 16 5 N -0.46 -15.00 2.79 -518.91 -1.45 -16.44 16 6 C 0.18 5.92 6.58 137.64 0.91 6.82 16 7 C 0.02 0.50 2.71 -11.48 -0.03 0.47 16 8 H 0.11 1.98 6.65 -2.39 -0.02 1.97 16 9 C -0.11 -2.25 5.27 30.68 0.16 -2.09 16 10 C -0.11 -1.46 6.09 30.65 0.19 -1.28 16 11 C 0.05 0.72 5.46 86.33 0.47 1.19 16 12 N -0.54 -9.04 4.91 -922.60 -4.53 -13.57 16 13 C 0.02 0.33 9.59 127.69 1.22 1.55 16 14 C 0.07 1.61 4.73 86.33 0.41 2.02 16 15 N -0.33 -13.83 12.18 -49.54 -0.60 -14.44 16 16 N -0.37 -17.96 10.15 -58.00 -0.59 -18.55 16 17 C 0.37 15.71 5.97 260.11 1.55 17.26 16 18 N -0.45 -19.79 4.66 -711.01 -3.31 -23.10 16 19 C 0.05 1.70 9.13 127.69 1.17 2.87 16 20 C 0.24 13.14 1.74 44.17 0.08 13.22 16 21 H -0.03 -1.63 7.90 -2.39 -0.02 -1.65 16 22 C -0.11 -6.08 8.80 71.98 0.63 -5.44 16 23 C -0.52 -28.35 7.95 25.60 0.20 -28.15 16 24 H 0.08 3.82 6.40 -2.91 -0.02 3.80 16 25 C 0.01 0.66 5.30 84.65 0.45 1.11 16 26 N -0.92 -54.72 11.32 21.45 0.24 -54.48 16 27 Si 0.97 43.02 29.54 68.60 2.03 45.05 16 28 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 29 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 30 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 31 H 0.11 2.49 8.05 -2.91 -0.02 2.46 16 32 H 0.09 2.74 7.99 -2.91 -0.02 2.72 16 33 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.08 1.06 7.85 -2.38 -0.02 1.04 16 35 H 0.08 1.16 8.10 -2.39 -0.02 1.14 16 36 H 0.10 2.25 6.70 -2.39 -0.02 2.24 16 37 H 0.13 1.99 6.94 -2.39 -0.02 1.98 16 38 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.02 0.42 8.14 -2.39 -0.02 0.40 16 43 H 0.10 1.03 8.09 -2.39 -0.02 1.01 16 44 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.09 0.89 8.09 -2.39 -0.02 0.87 16 46 H 0.02 0.30 8.14 -2.38 -0.02 0.28 16 47 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 48 H 0.07 1.59 8.12 -2.38 -0.02 1.57 16 49 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 50 H 0.09 3.48 6.32 -2.39 -0.02 3.47 16 51 H 0.08 2.37 6.83 -2.39 -0.02 2.35 16 52 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 53 H 0.06 3.73 6.07 -2.39 -0.01 3.72 16 54 H 0.01 0.56 6.32 -2.38 -0.02 0.55 16 55 H 0.26 14.84 8.31 -92.70 -0.77 14.07 16 Total: -1.00 -72.64 426.15 2.13 -70.51 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: 0.85 Total: 19.57 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: 9.50 Total: 5.45 kcal Atomic # 7 Polarization: -130.34 SS G_CDS: -10.24 Total: -140.58 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Total: -72.64 2.13 -70.51 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343966428.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.724 kcal (2) G-P(sol) polarization free energy of solvation -72.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds