Wall clock time and date at job start Wed Apr 1 2020 04:59:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50695 * 120.00203 * 2 1 4 4 C 1.50699 * 119.99824 * 179.97438 * 2 1 3 5 5 N 1.46503 * 109.47160 * 96.96224 * 4 2 1 6 6 C 1.36745 * 127.13205 * 290.98203 * 5 4 2 7 7 C 1.50694 * 126.34893 * 0.02562 * 6 5 4 8 8 C 1.52994 * 109.47515 * 275.48048 * 7 6 5 9 9 C 1.50704 * 109.47236 * 175.40739 * 8 7 6 10 10 H 1.07999 * 120.00114 * 0.02562 * 9 8 7 11 11 C 1.37877 * 119.99706 * 180.02562 * 9 8 7 12 12 N 1.31518 * 120.00291 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 119.99903 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47464 * 89.99175 * 13 11 9 15 15 H 1.48498 * 109.46964 * 209.99939 * 13 11 9 16 16 H 1.48509 * 109.46591 * 329.99345 * 13 11 9 17 17 N 1.30299 * 107.29761 * 179.75543 * 6 5 4 18 18 N 1.28524 * 110.05749 * 0.24636 * 17 6 5 19 19 C 1.31212 * 109.85919 * 359.97438 * 18 17 6 20 20 N 1.38583 * 126.47101 * 180.02562 * 19 18 17 21 21 C 1.47906 * 111.00117 * 115.07900 * 20 19 18 22 22 C 1.50804 * 108.50073 * 153.78879 * 21 20 19 23 23 C 1.53693 * 112.10049 * 92.55217 * 22 21 20 24 24 N 1.48068 * 112.47313 * 318.55273 * 23 22 21 25 25 C 1.46896 * 111.00358 * 192.19926 * 24 23 22 26 26 C 1.52999 * 109.47040 * 193.73248 * 25 24 23 27 27 C 1.44575 * 113.85258 * 318.32362 * 24 23 22 28 28 C 1.40017 * 111.00016 * 347.11088 * 20 19 18 29 29 H 1.07996 * 119.99800 * 0.02562 * 1 2 3 30 30 H 1.08000 * 119.99821 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47128 * 245.56296 * 3 2 1 32 32 H 1.08996 * 109.47223 * 5.55889 * 3 2 1 33 33 H 1.09003 * 109.47279 * 125.56499 * 3 2 1 34 34 H 1.09002 * 109.47297 * 336.96188 * 4 2 1 35 35 H 1.08996 * 109.47592 * 216.95938 * 4 2 1 36 36 H 1.09006 * 109.46800 * 155.47727 * 7 6 5 37 37 H 1.09005 * 109.47222 * 35.48647 * 7 6 5 38 38 H 1.09000 * 109.46837 * 55.40685 * 8 7 6 39 39 H 1.09000 * 109.47065 * 295.40937 * 8 7 6 40 40 H 0.96996 * 120.00203 * 180.02562 * 12 11 9 41 41 H 1.08997 * 109.63801 * 273.49420 * 21 20 19 42 42 H 1.09004 * 109.63039 * 34.08803 * 21 20 19 43 43 H 1.09001 * 108.95452 * 331.87849 * 22 21 20 44 44 H 1.08998 * 108.88685 * 213.18193 * 22 21 20 45 45 H 1.08998 * 108.88682 * 197.78392 * 23 22 21 46 46 H 1.08996 * 108.88378 * 79.32184 * 23 22 21 47 47 H 1.09000 * 109.47041 * 313.73090 * 25 24 23 48 48 H 1.08998 * 109.46958 * 73.73761 * 25 24 23 49 49 H 1.09003 * 109.47154 * 179.97438 * 26 25 24 50 50 H 1.08991 * 109.47571 * 300.00469 * 26 25 24 51 51 H 1.09005 * 109.47117 * 60.00174 * 26 25 24 52 52 H 1.09002 * 109.57418 * 334.41003 * 27 24 23 53 53 H 1.08999 * 109.67571 * 214.09833 * 27 24 23 54 54 H 1.08995 * 108.95931 * 308.76490 * 28 20 19 55 55 H 1.09002 * 108.95759 * 67.51004 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.0635 -1.3051 0.0006 5 7 2.4527 -1.6449 -1.3703 6 6 1.6265 -2.0151 -2.3952 7 6 0.1273 -2.1519 -2.3290 8 6 -0.2352 -3.5378 -1.7917 9 6 -1.7291 -3.6347 -1.6190 10 1 -2.3573 -2.7922 -1.8680 11 6 -2.2940 -4.7989 -1.1430 12 7 -1.5291 -5.8251 -0.8403 13 14 -4.1458 -4.9194 -0.9296 14 1 -4.7566 -5.4286 -2.1837 15 1 -4.4561 -5.8496 0.1855 16 1 -4.6969 -3.5753 -0.6209 17 7 2.3755 -2.2219 -3.4412 18 7 3.6095 -2.0142 -3.1477 19 6 3.7148 -1.6603 -1.8886 20 7 4.8861 -1.3548 -1.2140 21 6 4.9020 0.0636 -0.7951 22 6 5.7899 0.1947 0.4168 23 6 7.2377 0.5445 0.0377 24 7 7.7112 -0.2102 -1.1450 25 6 9.1651 -0.0771 -1.3070 26 6 9.5702 -0.5675 -2.6985 27 6 7.3145 -1.6004 -1.1487 28 6 6.0083 -1.7438 -1.9555 29 1 -0.5399 0.9353 -0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 2.6135 1.4071 -0.9356 32 1 1.3595 2.1311 0.0995 33 1 2.7629 1.3208 0.8360 34 1 1.4262 -2.0925 0.4031 35 1 2.9563 -1.2090 0.6184 36 1 -0.2933 -2.0277 -3.3270 37 1 -0.2784 -1.3876 -1.6661 38 1 0.2527 -3.6934 -0.8294 39 1 0.0993 -4.2995 -2.4960 40 1 -1.9265 -6.6442 -0.5058 41 1 5.2934 0.6801 -1.6043 42 1 3.8904 0.3827 -0.5442 43 1 5.7849 -0.7485 0.9631 44 1 5.3933 0.9791 1.0615 45 1 7.8879 0.3194 0.8831 46 1 7.2982 1.6113 -0.1772 47 1 9.4491 0.9692 -1.1936 48 1 9.6714 -0.6752 -0.5493 49 1 10.6490 -0.4684 -2.8189 50 1 9.2862 -1.6137 -2.8120 51 1 9.0639 0.0306 -3.4562 52 1 7.1500 -1.9360 -0.1247 53 1 8.0965 -2.2040 -1.6095 54 1 5.8904 -2.7847 -2.2566 55 1 6.0753 -1.1226 -2.8487 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346305206.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:20 Heat of formation + Delta-G solvation = 99.612876 kcal Electronic energy + Delta-G solvation = -32506.041340 eV Core-core repulsion = 28579.639944 eV Total energy + Delta-G solvation = -3926.401396 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.238 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -44.07730 -40.68497 -38.11331 -37.70128 -35.91770 -34.42528 -34.15862 -33.58769 -31.69854 -30.42441 -28.67384 -28.60438 -27.78314 -27.02356 -26.52209 -23.92638 -23.59179 -22.76001 -21.88653 -21.42258 -20.78962 -19.73389 -18.63299 -18.49481 -17.58213 -17.33791 -16.78742 -16.54236 -16.44776 -16.24215 -15.92164 -15.56678 -15.33960 -14.99742 -14.88114 -14.78270 -14.46034 -14.26071 -14.12727 -13.84691 -13.34380 -13.18293 -13.00447 -12.98343 -12.90079 -12.84088 -12.74869 -12.66594 -12.54554 -12.46621 -12.41159 -12.09380 -12.01303 -11.82582 -11.82367 -11.69219 -11.51216 -11.38141 -11.24883 -11.08509 -10.58200 -10.54458 -10.16422 -9.24250 -9.13835 -8.19606 -6.32166 0.76027 0.83749 1.43401 1.45278 1.55623 1.59567 1.81083 2.42244 2.65202 2.90573 3.14620 3.47600 3.57630 3.69221 3.72395 3.91356 4.00560 4.02794 4.03532 4.13494 4.24390 4.30287 4.35269 4.40931 4.42721 4.47822 4.57365 4.61469 4.65014 4.66794 4.68341 4.71192 4.73419 4.84682 4.86653 4.89917 4.94072 4.95891 5.02769 5.06278 5.09878 5.12027 5.19676 5.24850 5.39142 5.43808 5.54456 5.56786 5.60343 5.77162 5.78754 5.92266 6.15796 6.21296 6.24356 6.27373 6.83504 7.37996 7.76817 8.92539 Molecular weight = 347.24amu Principal moments of inertia in cm(-1) A = 0.017809 B = 0.002652 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.894401 B =10554.826702 C =11344.540819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.168 4.168 3 C -0.113 4.113 4 C 0.140 3.860 5 N -0.465 5.465 6 C 0.201 3.799 7 C -0.026 4.026 8 C 0.046 3.954 9 C -0.534 4.534 10 H 0.073 0.927 11 C 0.002 3.998 12 N -0.935 5.935 13 Si 0.967 3.033 14 H -0.277 1.277 15 H -0.285 1.285 16 H -0.254 1.254 17 N -0.335 5.335 18 N -0.361 5.361 19 C 0.354 3.646 20 N -0.451 5.451 21 C 0.053 3.947 22 C -0.116 4.116 23 C 0.063 3.937 24 N -0.569 5.569 25 C 0.059 3.941 26 C -0.150 4.150 27 C 0.076 3.924 28 C 0.089 3.911 29 H 0.130 0.870 30 H 0.095 0.905 31 H 0.054 0.946 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.124 0.876 36 H 0.081 0.919 37 H 0.105 0.895 38 H -0.007 1.007 39 H -0.022 1.022 40 H 0.263 0.737 41 H 0.053 0.947 42 H 0.095 0.905 43 H 0.071 0.929 44 H 0.106 0.894 45 H 0.047 0.953 46 H 0.082 0.918 47 H 0.082 0.918 48 H 0.039 0.961 49 H 0.072 0.928 50 H 0.050 0.950 51 H 0.050 0.950 52 H 0.055 0.945 53 H 0.091 0.909 54 H 0.058 0.942 55 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.041 18.859 8.069 27.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.169 4.169 3 C -0.169 4.169 4 C 0.019 3.981 5 N -0.159 5.159 6 C -0.068 4.068 7 C -0.066 4.066 8 C 0.008 3.992 9 C -0.572 4.572 10 H 0.092 0.908 11 C -0.196 4.196 12 N -0.575 5.575 13 Si 0.791 3.209 14 H -0.203 1.203 15 H -0.211 1.211 16 H -0.177 1.177 17 N -0.173 5.173 18 N -0.205 5.205 19 C -0.002 4.002 20 N -0.176 5.176 21 C -0.072 4.072 22 C -0.154 4.154 23 C -0.063 4.063 24 N -0.295 5.295 25 C -0.067 4.067 26 C -0.207 4.207 27 C -0.053 4.053 28 C -0.040 4.040 29 H 0.148 0.852 30 H 0.114 0.886 31 H 0.073 0.927 32 H 0.103 0.897 33 H 0.109 0.891 34 H 0.103 0.897 35 H 0.142 0.858 36 H 0.100 0.900 37 H 0.123 0.877 38 H 0.012 0.988 39 H -0.003 1.003 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.113 0.887 43 H 0.089 0.911 44 H 0.124 0.876 45 H 0.066 0.934 46 H 0.101 0.899 47 H 0.101 0.899 48 H 0.058 0.942 49 H 0.091 0.909 50 H 0.069 0.931 51 H 0.069 0.931 52 H 0.073 0.927 53 H 0.109 0.891 54 H 0.077 0.923 55 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 19.326 18.320 6.764 27.474 hybrid contribution -0.893 -0.843 0.975 1.567 sum 18.433 17.477 7.739 26.554 Atomic orbital electron populations 1.24283 0.95350 1.03537 0.95905 1.21847 0.95752 0.94993 1.04297 1.20972 1.00778 0.93155 1.02020 1.21084 1.02103 0.96375 0.78556 1.46280 1.05402 1.51857 1.12318 1.25238 0.97034 1.00377 0.84128 1.20414 0.81964 1.00586 1.03588 1.18800 0.96048 0.90437 0.93937 1.21543 0.92482 0.99832 1.43336 0.90847 1.25990 1.03406 0.95294 0.94952 1.70130 1.37494 1.04440 1.45438 0.85421 0.79093 0.78757 0.77638 1.20306 1.21092 1.17732 1.73881 0.97250 1.21285 1.24930 1.74412 1.12066 1.23735 1.10264 1.22749 0.85514 1.02914 0.89064 1.56241 0.97226 1.22594 1.41524 1.22529 1.02532 0.83238 0.98907 1.21480 0.93864 1.03718 0.96340 1.22438 0.94889 0.98586 0.90413 1.60712 1.14036 1.12775 1.41947 1.22045 0.85779 1.01809 0.97117 1.21843 1.01400 1.00962 0.96516 1.21802 0.94655 0.89509 0.99366 1.20894 0.88447 0.99821 0.94848 0.85203 0.88635 0.92725 0.89711 0.89074 0.89714 0.85827 0.90043 0.87664 0.98829 1.00336 0.92835 0.92845 0.88739 0.91060 0.87564 0.93439 0.89937 0.89926 0.94236 0.90893 0.93138 0.93116 0.92715 0.89090 0.92323 0.94877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.59 11.91 67.78 0.81 -2.78 16 2 C -0.17 -3.77 5.41 -16.50 -0.09 -3.86 16 3 C -0.11 -1.78 8.39 71.23 0.60 -1.18 16 4 C 0.14 3.85 5.40 85.63 0.46 4.31 16 5 N -0.46 -16.41 2.81 -518.91 -1.46 -17.87 16 6 C 0.20 8.57 7.17 137.63 0.99 9.56 16 7 C -0.03 -1.12 5.47 29.84 0.16 -0.96 16 8 C 0.05 2.45 4.95 29.85 0.15 2.60 16 9 C -0.53 -29.20 9.11 25.60 0.23 -28.97 16 10 H 0.07 3.72 7.74 -2.91 -0.02 3.70 16 11 C 0.00 0.09 5.46 84.65 0.46 0.55 16 12 N -0.93 -56.88 13.29 21.45 0.28 -56.60 16 13 Si 0.97 43.10 29.54 68.60 2.03 45.13 16 14 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 15 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 16 H -0.25 -10.45 7.11 99.48 0.71 -9.74 16 17 N -0.34 -15.75 12.18 -49.54 -0.60 -16.36 16 18 N -0.36 -15.55 11.30 -58.01 -0.66 -16.21 16 19 C 0.35 12.62 6.86 260.12 1.78 14.40 16 20 N -0.45 -12.11 3.93 -721.43 -2.83 -14.94 16 21 C 0.05 1.05 4.74 85.40 0.40 1.45 16 22 C -0.12 -1.51 5.36 30.11 0.16 -1.35 16 23 C 0.06 0.76 5.42 86.31 0.47 1.23 16 24 N -0.57 -8.95 3.94 -895.24 -3.53 -12.48 16 25 C 0.06 0.73 5.55 86.30 0.48 1.21 16 26 C -0.15 -1.95 9.88 71.98 0.71 -1.24 16 27 C 0.08 1.40 5.15 87.14 0.45 1.85 16 28 C 0.09 2.34 4.47 87.95 0.39 2.74 16 29 H 0.13 2.35 7.84 -2.91 -0.02 2.33 16 30 H 0.10 2.79 6.68 -2.91 -0.02 2.77 16 31 H 0.05 1.01 6.76 -2.38 -0.02 0.99 16 32 H 0.08 1.08 7.80 -2.39 -0.02 1.06 16 33 H 0.09 1.00 7.84 -2.39 -0.02 0.98 16 34 H 0.08 2.68 7.72 -2.39 -0.02 2.66 16 35 H 0.12 2.75 7.12 -2.39 -0.02 2.74 16 36 H 0.08 3.51 8.14 -2.38 -0.02 3.49 16 37 H 0.11 3.93 4.09 -2.38 -0.01 3.92 16 38 H -0.01 -0.37 7.90 -2.39 -0.02 -0.39 16 39 H -0.02 -1.34 8.14 -2.39 -0.02 -1.36 16 40 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 41 H 0.05 1.20 7.57 -2.39 -0.02 1.18 16 42 H 0.09 1.81 2.11 -2.39 -0.01 1.80 16 43 H 0.07 1.06 7.23 -2.39 -0.02 1.04 16 44 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.05 0.48 8.03 -2.39 -0.02 0.46 16 46 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 47 H 0.08 0.85 8.03 -2.39 -0.02 0.83 16 48 H 0.04 0.44 8.12 -2.39 -0.02 0.42 16 49 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 50 H 0.05 0.73 6.38 -2.39 -0.02 0.71 16 51 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 52 H 0.05 0.99 6.93 -2.39 -0.02 0.98 16 53 H 0.09 1.52 5.86 -2.39 -0.01 1.50 16 54 H 0.06 1.79 7.86 -2.39 -0.02 1.77 16 55 H 0.03 0.99 8.04 -2.39 -0.02 0.97 16 Total: -1.00 -73.61 413.81 2.72 -70.89 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: 0.87 Total: 18.89 kcal Atomic # 6 Polarization: -9.07 SS G_CDS: 8.62 Total: -0.45 kcal Atomic # 7 Polarization: -125.67 SS G_CDS: -8.79 Total: -134.46 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -73.61 2.72 -70.89 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346305206.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.506 kcal (2) G-P(sol) polarization free energy of solvation -73.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds