Wall clock time and date at job start Wed Apr 1 2020 05:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36740 * 127.13717 * 2 1 4 4 C 1.50703 * 126.34757 * 0.04067 * 3 2 1 5 5 C 1.53001 * 109.47300 * 270.24945 * 4 3 2 6 6 C 1.50693 * 109.47514 * 179.97438 * 5 4 3 7 7 H 1.08002 * 119.99737 * 359.97438 * 6 5 4 8 8 C 1.37876 * 120.00419 * 180.02562 * 6 5 4 9 9 N 1.31522 * 119.99880 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 120.00422 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47444 * 59.99298 * 10 8 6 12 12 H 1.48495 * 109.47619 * 179.97438 * 10 8 6 13 13 H 1.48502 * 109.47117 * 299.99792 * 10 8 6 14 14 N 1.30290 * 107.30761 * 180.22815 * 3 2 1 15 15 N 1.28530 * 110.05296 * 359.77901 * 14 3 2 16 16 C 1.31216 * 109.86062 * 359.97438 * 15 14 3 17 17 N 1.38580 * 126.47454 * 179.97438 * 16 15 14 18 18 C 1.46956 * 111.00097 * 0.03548 * 17 16 15 19 19 C 1.53050 * 109.36486 * 183.18470 * 18 17 16 20 20 N 1.46952 * 109.36250 * 301.59518 * 19 18 17 21 21 C 1.46899 * 110.99678 * 183.18837 * 20 19 18 22 22 C 1.52999 * 109.47571 * 294.99847 * 21 20 19 23 23 C 1.52997 * 109.47592 * 180.02562 * 22 21 20 24 24 C 1.52996 * 109.47165 * 60.00300 * 23 22 21 25 25 C 1.53002 * 109.46972 * 300.00293 * 24 23 22 26 26 C 1.52997 * 109.47415 * 59.99860 * 25 24 23 27 27 C 1.46959 * 110.88201 * 59.32240 * 20 19 18 28 28 C 1.46962 * 110.99492 * 123.82901 * 17 16 15 29 29 H 1.08996 * 109.46923 * 270.15150 * 1 2 3 30 30 H 1.08998 * 109.47053 * 30.14554 * 1 2 3 31 31 H 1.08995 * 109.46752 * 150.14959 * 1 2 3 32 32 H 1.08997 * 109.47055 * 30.24734 * 4 3 2 33 33 H 1.08993 * 109.47202 * 150.24897 * 4 3 2 34 34 H 1.08997 * 109.47003 * 300.00667 * 5 4 3 35 35 H 1.09005 * 109.46904 * 59.99503 * 5 4 3 36 36 H 0.96996 * 120.00117 * 180.02562 * 9 8 6 37 37 H 1.08997 * 109.48712 * 63.21365 * 18 17 16 38 38 H 1.09003 * 109.49983 * 303.16486 * 18 17 16 39 39 H 1.09001 * 109.48854 * 181.62826 * 19 18 17 40 40 H 1.09003 * 109.48812 * 61.56717 * 19 18 17 41 41 H 1.09000 * 109.47162 * 55.00193 * 21 20 19 42 42 H 1.09000 * 109.47160 * 300.00348 * 22 21 20 43 43 H 1.09002 * 109.46719 * 60.00068 * 22 21 20 44 44 H 1.09000 * 109.47140 * 300.00346 * 23 22 21 45 45 H 1.09001 * 109.47375 * 180.02562 * 23 22 21 46 46 H 1.08992 * 109.47534 * 180.02562 * 24 23 22 47 47 H 1.08996 * 109.47134 * 59.99508 * 24 23 22 48 48 H 1.09000 * 109.46986 * 299.99742 * 25 24 23 49 49 H 1.09001 * 109.47601 * 180.02562 * 25 24 23 50 50 H 1.09001 * 109.46922 * 180.02562 * 26 25 24 51 51 H 1.09000 * 109.47140 * 59.99976 * 26 25 24 52 52 H 1.08997 * 109.48504 * 60.64595 * 27 20 19 53 53 H 1.09000 * 109.48696 * 180.70537 * 27 20 19 54 54 H 1.08999 * 109.48986 * 296.78181 * 28 17 16 55 55 H 1.09004 * 109.48775 * 56.82749 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2906 1.0901 0.0000 4 6 1.8622 2.5349 0.0009 5 6 1.7103 3.0228 -1.4413 6 6 1.2813 4.4674 -1.4405 7 1 1.1315 4.9856 -0.5049 8 6 1.0791 5.1272 -2.6341 9 7 1.2610 4.4959 -3.7735 10 14 0.5480 6.9180 -2.6331 11 1 1.5733 7.7381 -1.9391 12 1 0.4005 7.3915 -4.0328 13 1 -0.7515 7.0486 -1.9264 14 7 3.5162 0.6481 -0.0050 15 7 3.5212 -0.6372 -0.0034 16 6 2.2889 -1.0878 0.0032 17 7 1.8978 -2.4173 0.0063 18 6 3.0654 -3.3097 0.0019 19 6 2.5928 -4.7633 -0.0748 20 7 1.7173 -5.0520 1.0696 21 6 1.3028 -6.4613 1.0729 22 6 0.4363 -6.7410 -0.1566 23 6 0.0041 -8.2087 -0.1528 24 6 -0.8010 -8.5000 1.1152 25 6 0.0655 -8.2203 2.3448 26 6 0.4977 -6.7526 2.3410 27 6 0.5497 -4.1596 1.0741 28 6 1.0223 -2.7059 1.1508 29 1 -0.3633 0.0027 1.0276 30 1 -0.3633 0.8887 -0.5161 31 1 -0.3633 -0.8913 -0.5115 32 1 0.9081 2.6307 0.5191 33 1 2.6145 3.1367 0.5106 34 1 2.6644 2.9269 -1.9596 35 1 0.9579 2.4209 -1.9511 36 1 1.1191 4.9602 -4.6132 37 1 3.6396 -3.1616 0.9165 38 1 3.6920 -3.0849 -0.8612 39 1 3.4561 -5.4282 -0.0490 40 1 2.0418 -4.9181 -1.0024 41 1 2.1858 -7.0998 1.0480 42 1 -0.4468 -6.1025 -0.1317 43 1 1.0097 -6.5331 -1.0600 44 1 0.8869 -8.8475 -0.1775 45 1 -0.6129 -8.4081 -1.0291 46 1 -1.1085 -9.5456 1.1181 47 1 -1.6837 -7.8611 1.1399 48 1 0.9483 -8.8591 2.3201 49 1 -0.5078 -8.4282 3.2483 50 1 1.1153 -6.5535 3.2168 51 1 -0.3851 -6.1138 2.3657 52 1 -0.0246 -4.3076 0.1595 53 1 -0.0766 -4.3845 1.9374 54 1 1.5733 -2.5511 2.0784 55 1 0.1591 -2.0408 1.1251 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001351093975.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:34 Heat of formation + Delta-G solvation = 57.331348 kcal Electronic energy + Delta-G solvation = -31355.537744 eV Core-core repulsion = 27427.302884 eV Total energy + Delta-G solvation = -3928.234861 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.238 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -44.02462 -41.10208 -38.99701 -36.42293 -36.20266 -35.40401 -33.56994 -32.26293 -31.57425 -31.18495 -29.70796 -28.58079 -27.24225 -26.67206 -25.01537 -23.67492 -23.55972 -22.94883 -22.24873 -21.51952 -20.95451 -19.97795 -18.68309 -18.37892 -17.43875 -17.37917 -16.80683 -16.48927 -16.23936 -16.10586 -15.73441 -15.42568 -15.22546 -15.13860 -14.93167 -14.83356 -14.62517 -14.38227 -14.16341 -13.85238 -13.81185 -13.28064 -13.23655 -13.13332 -12.88367 -12.82878 -12.67811 -12.57837 -12.47632 -12.38818 -12.26510 -12.05745 -11.88115 -11.80662 -11.73874 -11.47548 -11.35141 -11.30331 -11.16285 -11.14583 -10.95267 -10.74937 -10.56260 -9.31442 -9.21067 -8.19828 -6.32581 0.76216 1.23323 1.43596 1.47112 1.54617 1.78766 2.42328 2.56924 2.81026 3.14147 3.46294 3.62086 3.71338 3.74164 3.85627 3.87325 3.97732 4.08379 4.13361 4.14098 4.25391 4.26384 4.28508 4.38100 4.41898 4.44658 4.50923 4.54772 4.60029 4.64879 4.66050 4.71101 4.74788 4.76334 4.81275 4.83475 4.87354 4.94100 4.99287 5.06775 5.18033 5.20938 5.25792 5.25978 5.37975 5.43514 5.46405 5.47229 5.56033 5.57855 5.62625 5.78643 6.03764 6.07418 6.14921 6.18588 6.83449 7.37487 7.74474 8.91996 Molecular weight = 347.24amu Principal moments of inertia in cm(-1) A = 0.024092 B = 0.001897 C = 0.001854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.933881 B =14753.687044 C =15100.459927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.481 5.481 3 C 0.196 3.804 4 C -0.013 4.013 5 C 0.043 3.957 6 C -0.539 4.539 7 H 0.074 0.926 8 C -0.001 4.001 9 N -0.935 5.935 10 Si 0.970 3.030 11 H -0.268 1.268 12 H -0.288 1.288 13 H -0.260 1.260 14 N -0.333 5.333 15 N -0.361 5.361 16 C 0.351 3.649 17 N -0.446 5.446 18 C 0.078 3.922 19 C 0.065 3.935 20 N -0.541 5.541 21 C 0.091 3.909 22 C -0.150 4.150 23 C -0.113 4.113 24 C -0.119 4.119 25 C -0.115 4.115 26 C -0.108 4.108 27 C 0.061 3.939 28 C 0.052 3.948 29 H 0.109 0.891 30 H 0.091 0.909 31 H 0.107 0.893 32 H 0.099 0.901 33 H 0.088 0.912 34 H -0.020 1.020 35 H -0.006 1.006 36 H 0.263 0.737 37 H 0.048 0.952 38 H 0.077 0.923 39 H 0.100 0.900 40 H 0.049 0.951 41 H 0.083 0.917 42 H 0.063 0.937 43 H 0.056 0.944 44 H 0.063 0.937 45 H 0.061 0.939 46 H 0.067 0.933 47 H 0.059 0.941 48 H 0.063 0.937 49 H 0.069 0.931 50 H 0.065 0.935 51 H 0.065 0.935 52 H 0.052 0.948 53 H 0.107 0.893 54 H 0.044 0.956 55 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.444 -28.666 13.267 32.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.175 5.175 3 C -0.073 4.073 4 C -0.053 4.053 5 C 0.004 3.996 6 C -0.577 4.577 7 H 0.092 0.908 8 C -0.199 4.199 9 N -0.575 5.575 10 Si 0.794 3.206 11 H -0.193 1.193 12 H -0.214 1.214 13 H -0.184 1.184 14 N -0.171 5.171 15 N -0.205 5.205 16 C -0.006 4.006 17 N -0.171 5.171 18 C -0.049 4.049 19 C -0.063 4.063 20 N -0.265 5.265 21 C -0.017 4.017 22 C -0.189 4.189 23 C -0.151 4.151 24 C -0.157 4.157 25 C -0.153 4.153 26 C -0.146 4.146 27 C -0.067 4.067 28 C -0.075 4.075 29 H 0.128 0.872 30 H 0.110 0.890 31 H 0.125 0.875 32 H 0.117 0.883 33 H 0.106 0.894 34 H -0.001 1.001 35 H 0.013 0.987 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.095 0.905 39 H 0.119 0.881 40 H 0.067 0.933 41 H 0.102 0.898 42 H 0.081 0.919 43 H 0.075 0.925 44 H 0.082 0.918 45 H 0.079 0.921 46 H 0.085 0.915 47 H 0.078 0.922 48 H 0.082 0.918 49 H 0.088 0.912 50 H 0.084 0.916 51 H 0.084 0.916 52 H 0.070 0.930 53 H 0.125 0.875 54 H 0.063 0.937 55 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -6.960 -28.681 13.104 32.292 hybrid contribution -1.193 1.071 -0.920 1.849 sum -8.153 -27.610 12.184 31.261 Atomic orbital electron populations 1.22460 0.73127 1.06208 1.05627 1.46200 1.09965 1.04727 1.56656 1.25324 0.86405 0.92852 1.02744 1.20129 1.02315 0.82942 0.99890 1.18838 0.94666 0.95545 0.90522 1.21566 1.45973 0.96905 0.93223 0.90804 1.26031 0.95397 1.03355 0.95132 1.70127 1.50276 1.39000 0.98118 0.85426 0.79391 0.78755 0.77024 1.19289 1.21398 1.18413 1.73870 1.19297 1.03167 1.20749 1.74386 1.17415 1.03535 1.25200 1.22838 0.86692 0.88229 1.02848 1.59037 1.20064 0.95489 1.42462 1.22086 0.89486 0.91104 1.02212 1.22151 0.97931 0.93531 0.92668 1.62431 1.17624 1.04438 1.41971 1.21746 0.97690 0.87377 0.94914 1.22186 1.00227 0.97814 0.98624 1.21446 1.00141 0.95428 0.98120 1.21543 0.98271 1.01554 0.94309 1.21497 0.99890 0.95692 0.98231 1.21575 0.99456 0.96865 0.96716 1.22221 0.92614 0.89062 1.02770 1.22584 0.96372 0.98994 0.89507 0.87247 0.88997 0.87472 0.88292 0.89399 1.00134 0.98728 0.92827 0.93399 0.90485 0.88140 0.93293 0.89838 0.91883 0.92482 0.91797 0.92068 0.91475 0.92172 0.91804 0.91200 0.91616 0.91632 0.92974 0.87501 0.93735 0.88314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.53 9.19 127.77 1.17 2.70 16 2 N -0.48 -16.16 3.21 -538.19 -1.73 -17.89 16 3 C 0.20 8.09 7.32 137.64 1.01 9.10 16 4 C -0.01 -0.54 5.36 29.85 0.16 -0.38 16 5 C 0.04 2.25 4.95 29.85 0.15 2.40 16 6 C -0.54 -29.62 9.11 25.60 0.23 -29.39 16 7 H 0.07 3.75 7.74 -2.91 -0.02 3.73 16 8 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 9 N -0.94 -57.13 13.29 21.45 0.28 -56.85 16 10 Si 0.97 43.33 29.54 68.60 2.03 45.35 16 11 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 12 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 13 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 14 N -0.33 -15.37 12.18 -49.54 -0.60 -15.98 16 15 N -0.36 -15.23 11.30 -58.00 -0.66 -15.88 16 16 C 0.35 12.12 7.21 260.11 1.88 14.00 16 17 N -0.45 -11.56 4.75 -705.53 -3.35 -14.91 16 18 C 0.08 1.90 4.99 86.31 0.43 2.33 16 19 C 0.07 1.11 5.25 86.31 0.45 1.57 16 20 N -0.54 -8.11 4.70 -870.47 -4.09 -12.20 16 21 C 0.09 1.04 2.23 44.92 0.10 1.14 16 22 C -0.15 -1.66 4.50 30.59 0.14 -1.52 16 23 C -0.11 -1.05 5.92 30.59 0.18 -0.87 16 24 C -0.12 -0.96 5.92 30.59 0.18 -0.78 16 25 C -0.12 -0.92 5.92 30.59 0.18 -0.73 16 26 C -0.11 -1.06 5.01 30.60 0.15 -0.90 16 27 C 0.06 0.87 4.81 86.31 0.42 1.28 16 28 C 0.05 0.99 5.43 86.31 0.47 1.46 16 29 H 0.11 1.74 7.79 -2.39 -0.02 1.72 16 30 H 0.09 2.33 7.91 -2.39 -0.02 2.31 16 31 H 0.11 2.03 7.65 -2.39 -0.02 2.01 16 32 H 0.10 3.45 7.95 -2.39 -0.02 3.43 16 33 H 0.09 3.62 8.14 -2.39 -0.02 3.60 16 34 H -0.02 -1.21 8.14 -2.39 -0.02 -1.23 16 35 H -0.01 -0.31 8.14 -2.38 -0.02 -0.33 16 36 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 37 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.08 2.12 8.02 -2.39 -0.02 2.10 16 39 H 0.10 1.45 8.12 -2.39 -0.02 1.43 16 40 H 0.05 0.85 6.60 -2.39 -0.02 0.83 16 41 H 0.08 0.99 8.11 -2.39 -0.02 0.97 16 42 H 0.06 0.75 6.46 -2.39 -0.02 0.73 16 43 H 0.06 0.73 6.59 -2.39 -0.02 0.72 16 44 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 45 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 46 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 47 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 48 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 49 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 50 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 51 H 0.07 0.62 6.36 -2.39 -0.02 0.60 16 52 H 0.05 0.75 6.46 -2.39 -0.02 0.73 16 53 H 0.11 1.15 6.17 -2.39 -0.01 1.13 16 54 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 55 H 0.10 1.58 5.35 -2.39 -0.01 1.56 16 Total: -1.00 -73.78 412.18 0.50 -73.27 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: 0.86 Total: 13.28 kcal Atomic # 6 Polarization: -5.97 SS G_CDS: 7.76 Total: 1.79 kcal Atomic # 7 Polarization: -123.56 SS G_CDS: -10.14 Total: -133.70 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.35 kcal Total: -73.78 0.50 -73.27 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351093975.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.605 kcal (2) G-P(sol) polarization free energy of solvation -73.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds