Wall clock time and date at job start Wed Apr 1 2020 04:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 108.93758 * 2 1 4 4 C 1.50797 * 108.88592 * 118.70992 * 2 1 3 5 5 N 1.47915 * 108.49820 * 213.17548 * 4 2 1 6 6 C 1.38579 * 110.99670 * 153.78743 * 5 4 2 7 7 N 1.31218 * 126.47481 * 4.04675 * 6 5 4 8 8 N 1.28530 * 109.85916 * 179.97438 * 7 6 5 9 9 C 1.30296 * 110.05273 * 359.97438 * 8 7 6 10 10 C 1.50701 * 126.34262 * 179.97438 * 9 8 7 11 11 C 1.53004 * 109.47211 * 90.03217 * 10 9 8 12 12 C 1.50701 * 109.47211 * 179.97438 * 11 10 9 13 13 H 1.08002 * 119.99761 * 359.97438 * 12 11 10 14 14 C 1.37871 * 119.99694 * 180.27574 * 12 11 10 15 15 N 1.31514 * 120.00482 * 359.71466 * 14 12 11 16 16 Si 1.86801 * 119.99746 * 179.72062 * 14 12 11 17 17 H 1.48504 * 109.47266 * 60.00049 * 16 14 12 18 18 H 1.48504 * 109.46970 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47383 * 299.99456 * 16 14 12 20 20 N 1.36457 * 126.47138 * 184.32348 * 6 5 4 21 21 C 1.46495 * 127.13661 * 0.02562 * 20 6 5 22 22 C 1.40014 * 114.06835 * 280.08090 * 5 4 2 23 23 C 1.54198 * 112.08151 * 61.80399 * 22 5 4 24 24 N 1.44571 * 108.85271 * 281.17876 * 23 22 5 25 25 C 1.46895 * 111.00329 * 220.34894 * 24 23 22 26 26 C 1.53785 * 113.61237 * 153.54608 * 25 24 23 27 27 C 1.53779 * 87.07972 * 220.02154 * 26 25 24 28 28 C 1.53780 * 87.08445 * 25.43234 * 27 26 25 29 29 C 1.48069 * 113.85018 * 94.23427 * 24 23 22 30 30 H 1.08998 * 109.46790 * 178.74945 * 1 2 3 31 31 H 1.08999 * 109.46718 * 298.74163 * 1 2 3 32 32 H 1.09000 * 109.47142 * 58.74775 * 1 2 3 33 33 H 1.08999 * 109.63153 * 93.47932 * 4 2 1 34 34 H 1.09002 * 109.63351 * 332.88077 * 4 2 1 35 35 H 1.09000 * 109.47827 * 330.02621 * 10 9 8 36 36 H 1.09007 * 109.47098 * 210.02344 * 10 9 8 37 37 H 1.09000 * 109.47211 * 59.99027 * 11 10 9 38 38 H 1.09007 * 109.46376 * 299.99569 * 11 10 9 39 39 H 0.96995 * 120.00207 * 179.97438 * 15 14 12 40 40 H 1.08996 * 109.47302 * 270.17758 * 21 20 6 41 41 H 1.09002 * 109.47227 * 30.17867 * 21 20 6 42 42 H 1.09000 * 109.47338 * 150.17506 * 21 20 6 43 43 H 1.08994 * 108.95602 * 182.47469 * 22 5 4 44 44 H 1.09000 * 108.95510 * 301.13596 * 22 5 4 45 45 H 1.09000 * 109.57841 * 40.99420 * 23 22 5 46 46 H 1.09005 * 109.57144 * 161.37204 * 23 22 5 47 47 H 1.08996 * 112.85480 * 284.85164 * 25 24 23 48 48 H 1.09001 * 113.61595 * 334.56599 * 26 25 24 49 49 H 1.09000 * 113.61361 * 105.47210 * 26 25 24 50 50 H 1.09007 * 113.61708 * 270.88097 * 27 26 25 51 51 H 1.09008 * 113.61725 * 139.98145 * 27 26 25 52 52 H 1.09000 * 113.61813 * 220.01988 * 28 27 26 53 53 H 1.09004 * 113.68643 * 89.12356 * 28 27 26 54 54 H 1.08997 * 108.88712 * 79.08901 * 29 24 23 55 55 H 1.09003 * 108.88000 * 197.64875 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8838 1.0310 0.0000 4 6 2.0182 -0.6854 1.2514 5 7 3.2810 -0.0429 1.6762 6 6 3.4736 -0.1813 3.0416 7 7 2.7122 -0.8532 3.8727 8 7 3.1868 -0.7698 5.0642 9 6 4.2704 -0.0462 5.0639 10 6 5.1214 0.2880 6.2619 11 6 6.2006 -0.7827 6.4355 12 6 7.0520 -0.4482 7.6331 13 1 6.8445 0.4396 8.2122 14 6 8.0997 -1.2720 7.9858 15 7 8.3527 -2.3528 7.2805 16 14 9.1600 -0.8532 9.4656 17 1 8.3130 -0.8082 10.6846 18 1 10.2103 -1.8899 9.6313 19 1 9.7992 0.4709 9.2578 20 7 4.4882 0.3597 3.7765 21 6 5.5853 1.1980 3.2871 22 6 4.4077 -0.4720 0.9643 23 6 4.3023 -0.1458 -0.5391 24 7 3.4441 -1.1232 -1.1702 25 6 3.9730 -1.5192 -2.4821 26 6 3.5451 -2.9304 -2.9183 27 6 4.9731 -3.1108 -3.4596 28 6 5.4126 -2.0575 -2.4290 29 6 2.0293 -0.6990 -1.2745 30 1 -0.3633 -1.0274 -0.0224 31 1 -0.3633 0.4942 0.9011 32 1 -0.3633 0.5332 -0.8785 33 1 2.1957 -1.7409 1.0453 34 1 1.2721 -0.5835 2.0395 35 1 4.4961 0.3216 7.1540 36 1 5.5938 1.2589 6.1125 37 1 6.8260 -0.8163 5.5434 38 1 5.7282 -1.7537 6.5849 39 1 9.0900 -2.9322 7.5284 40 1 6.4243 0.5656 2.9970 41 1 5.2472 1.7715 2.4240 42 1 5.9007 1.8808 4.0760 43 1 5.2918 0.0179 1.3720 44 1 4.5141 -1.5500 1.0862 45 1 3.8782 0.8500 -0.6679 46 1 5.2934 -0.1839 -0.9913 47 1 3.8193 -0.7588 -3.2477 48 1 3.3073 -3.5917 -2.0851 49 1 2.7801 -2.9342 -3.6947 50 1 5.0924 -2.7865 -4.4935 51 1 5.3881 -4.1018 -3.2753 52 1 6.1552 -1.3566 -2.8103 53 1 5.6857 -2.4789 -1.4615 54 1 1.9276 -0.0135 -2.1157 55 1 1.4105 -1.5773 -1.4589 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001351094201.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:51 Heat of formation + Delta-G solvation = 97.058843 kcal Electronic energy + Delta-G solvation = -31869.703144 eV Core-core repulsion = 27943.190997 eV Total energy + Delta-G solvation = -3926.512147 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.238 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -44.04961 -41.12730 -39.38794 -36.64469 -36.41269 -35.43977 -34.78878 -33.54889 -30.89049 -29.41612 -28.40548 -27.62965 -27.18576 -26.81779 -26.13582 -24.39626 -23.71980 -22.79103 -21.72864 -21.58293 -20.51292 -20.17549 -18.69463 -18.31802 -17.59415 -17.31530 -16.95618 -16.93776 -16.52342 -16.45604 -16.11385 -15.51667 -15.22947 -14.95562 -14.61366 -14.48531 -14.26135 -14.18005 -14.08708 -13.73569 -13.46641 -13.31103 -13.27099 -13.19313 -12.85483 -12.82545 -12.71260 -12.54624 -12.44483 -12.32388 -12.15973 -11.98995 -11.95042 -11.83389 -11.76838 -11.45040 -11.42483 -11.32775 -11.19397 -11.12306 -11.07125 -10.68571 -10.56047 -9.22705 -9.15901 -8.19818 -6.32477 0.78983 1.27790 1.43465 1.46959 1.54377 1.81033 2.42505 2.58814 2.85798 3.14321 3.43388 3.56060 3.67119 3.74663 3.81297 3.84656 3.92567 3.97836 4.03985 4.05399 4.16441 4.23656 4.25329 4.31725 4.42689 4.47699 4.48910 4.58518 4.60701 4.68277 4.69332 4.75875 4.79962 4.84638 4.87780 4.88929 4.92539 4.93995 4.95671 5.05617 5.08130 5.10010 5.13158 5.26130 5.32994 5.39404 5.44522 5.52277 5.56347 5.59833 5.78660 5.86219 6.15411 6.20966 6.23665 6.27290 6.83470 7.37675 7.76774 8.92103 Molecular weight = 347.24amu Principal moments of inertia in cm(-1) A = 0.013454 B = 0.002453 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.632694 B =11411.578003 C =12802.644198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.084 4.084 3 H 0.080 0.920 4 C 0.093 3.907 5 N -0.444 5.444 6 C 0.355 3.645 7 N -0.361 5.361 8 N -0.333 5.333 9 C 0.196 3.804 10 C -0.014 4.014 11 C 0.045 3.955 12 C -0.539 4.539 13 H 0.073 0.927 14 C 0.001 3.999 15 N -0.936 5.936 16 Si 0.968 3.032 17 H -0.268 1.268 18 H -0.288 1.288 19 H -0.260 1.260 20 N -0.482 5.482 21 C 0.068 3.932 22 C 0.063 3.937 23 C 0.080 3.920 24 N -0.560 5.560 25 C 0.062 3.938 26 C -0.127 4.127 27 C -0.138 4.138 28 C -0.134 4.134 29 C 0.074 3.926 30 H 0.059 0.941 31 H 0.053 0.947 32 H 0.075 0.925 33 H 0.047 0.953 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.098 0.902 37 H -0.006 1.006 38 H -0.020 1.020 39 H 0.263 0.737 40 H 0.082 0.918 41 H 0.117 0.883 42 H 0.106 0.894 43 H 0.083 0.917 44 H 0.017 0.983 45 H 0.062 0.938 46 H 0.095 0.905 47 H 0.077 0.923 48 H 0.071 0.929 49 H 0.073 0.927 50 H 0.093 0.907 51 H 0.066 0.934 52 H 0.076 0.924 53 H 0.071 0.929 54 H 0.050 0.950 55 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.965 8.339 -26.584 29.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.103 4.103 3 H 0.098 0.902 4 C -0.033 4.033 5 N -0.167 5.167 6 C -0.002 4.002 7 N -0.206 5.206 8 N -0.171 5.171 9 C -0.074 4.074 10 C -0.053 4.053 11 C 0.006 3.994 12 C -0.577 4.577 13 H 0.092 0.908 14 C -0.197 4.197 15 N -0.575 5.575 16 Si 0.792 3.208 17 H -0.193 1.193 18 H -0.213 1.213 19 H -0.184 1.184 20 N -0.177 5.177 21 C -0.073 4.073 22 C -0.066 4.066 23 C -0.049 4.049 24 N -0.285 5.285 25 C -0.045 4.045 26 C -0.165 4.165 27 C -0.176 4.176 28 C -0.172 4.172 29 C -0.053 4.053 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.094 0.906 33 H 0.066 0.934 34 H 0.092 0.908 35 H 0.105 0.895 36 H 0.117 0.883 37 H 0.013 0.987 38 H -0.002 1.002 39 H 0.072 0.928 40 H 0.101 0.899 41 H 0.135 0.865 42 H 0.125 0.875 43 H 0.101 0.899 44 H 0.036 0.964 45 H 0.081 0.919 46 H 0.113 0.887 47 H 0.095 0.905 48 H 0.090 0.910 49 H 0.092 0.908 50 H 0.112 0.888 51 H 0.085 0.915 52 H 0.095 0.905 53 H 0.090 0.910 54 H 0.068 0.932 55 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -10.020 7.439 -25.973 28.816 hybrid contribution 1.716 0.184 0.278 1.748 sum -8.305 7.623 -25.695 28.059 Atomic orbital electron populations 1.21783 0.92726 1.02554 1.02603 1.20982 0.96975 1.00052 0.92313 0.90172 1.21868 0.87387 0.96454 0.97558 1.56211 1.06788 1.58809 0.94914 1.22810 0.88943 0.95948 0.92495 1.74387 1.27456 1.21819 0.96917 1.73869 1.10013 1.18700 1.14564 1.25281 0.96698 0.98398 0.87000 1.20139 0.94547 1.00672 0.89960 1.18817 0.92009 0.92643 0.95915 1.21574 1.13637 1.09754 1.12759 0.90844 1.26002 0.99085 0.94648 0.99999 1.70119 1.30914 1.14909 1.41607 0.85453 0.77964 0.78252 0.79098 1.19296 1.21347 1.18405 1.46213 1.23416 1.41001 1.07060 1.22432 0.87042 0.94729 1.03062 1.21408 0.91135 0.98185 0.95901 1.21725 0.98296 0.94394 0.90497 1.60852 1.02320 1.43011 1.22271 1.23234 0.95846 0.96373 0.89052 1.22918 0.97277 0.96008 1.00268 1.22724 0.96328 0.99354 0.99151 1.22999 0.95602 0.98881 0.99716 1.22416 0.87795 0.99116 0.95974 0.92187 0.92787 0.90591 0.93434 0.90752 0.89451 0.88331 0.98721 1.00202 0.92814 0.89926 0.86455 0.87514 0.89918 0.96421 0.91946 0.88655 0.90496 0.91012 0.90824 0.88823 0.91508 0.90524 0.91039 0.93162 0.90709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 8.85 71.98 0.64 -1.30 16 2 C -0.08 -1.41 2.25 -11.27 -0.03 -1.43 16 3 H 0.08 1.37 7.23 -2.39 -0.02 1.35 16 4 C 0.09 2.31 4.51 85.39 0.39 2.69 16 5 N -0.44 -11.73 4.12 -721.42 -2.97 -14.70 16 6 C 0.36 12.46 7.15 260.11 1.86 14.32 16 7 N -0.36 -15.42 10.88 -58.00 -0.63 -16.05 16 8 N -0.33 -15.55 12.18 -49.54 -0.60 -16.15 16 9 C 0.20 8.15 7.32 137.64 1.01 9.16 16 10 C -0.01 -0.56 5.53 29.85 0.17 -0.40 16 11 C 0.04 2.35 4.96 29.85 0.15 2.50 16 12 C -0.54 -29.71 9.11 25.60 0.23 -29.48 16 13 H 0.07 3.74 7.74 -2.91 -0.02 3.72 16 14 C 0.00 0.03 5.46 84.65 0.46 0.49 16 15 N -0.94 -57.08 13.29 21.45 0.28 -56.80 16 16 Si 0.97 43.32 29.54 68.60 2.03 45.35 16 17 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 18 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 19 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 20 N -0.48 -16.47 3.20 -538.20 -1.72 -18.20 16 21 C 0.07 1.60 9.25 127.77 1.18 2.78 16 22 C 0.06 1.45 4.88 87.95 0.43 1.88 16 23 C 0.08 1.29 5.23 87.15 0.46 1.74 16 24 N -0.56 -9.09 3.91 -866.90 -3.39 -12.48 16 25 C 0.06 0.82 3.17 45.44 0.14 0.96 16 26 C -0.13 -1.67 7.75 31.12 0.24 -1.43 16 27 C -0.14 -1.61 8.08 31.12 0.25 -1.36 16 28 C -0.13 -1.78 6.19 31.12 0.19 -1.59 16 29 C 0.07 1.06 4.75 86.31 0.41 1.47 16 30 H 0.06 0.83 8.11 -2.39 -0.02 0.81 16 31 H 0.05 0.86 8.02 -2.39 -0.02 0.84 16 32 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.05 1.33 7.57 -2.39 -0.02 1.31 16 34 H 0.07 2.16 6.70 -2.39 -0.02 2.14 16 35 H 0.09 3.63 8.14 -2.39 -0.02 3.61 16 36 H 0.10 3.47 7.26 -2.38 -0.02 3.45 16 37 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 38 H -0.02 -1.26 8.14 -2.38 -0.02 -1.28 16 39 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 40 H 0.08 1.91 7.73 -2.39 -0.02 1.89 16 41 H 0.12 2.00 7.67 -2.39 -0.02 1.98 16 42 H 0.11 2.26 7.25 -2.39 -0.02 2.24 16 43 H 0.08 1.79 5.00 -2.39 -0.01 1.78 16 44 H 0.02 0.51 8.07 -2.39 -0.02 0.49 16 45 H 0.06 0.93 6.93 -2.39 -0.02 0.91 16 46 H 0.10 1.29 6.43 -2.38 -0.02 1.28 16 47 H 0.08 0.85 8.08 -2.39 -0.02 0.83 16 48 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 49 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 50 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 51 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 52 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 53 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 54 H 0.05 0.59 7.98 -2.39 -0.02 0.57 16 55 H 0.07 1.09 7.95 -2.39 -0.02 1.07 16 Total: -1.00 -73.71 418.32 2.02 -71.68 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: 0.85 Total: 16.35 kcal Atomic # 6 Polarization: -7.18 SS G_CDS: 8.18 Total: 1.00 kcal Atomic # 7 Polarization: -125.35 SS G_CDS: -9.04 Total: -134.38 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -73.71 2.02 -71.68 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351094201.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.743 kcal (2) G-P(sol) polarization free energy of solvation -73.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds