Wall clock time and date at job start Wed Apr 1 2020 05:02:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 N 1.46501 * 109.47306 * 2 1
4 4 C 1.36733 * 127.13819 * 268.78721 * 3 2 1
5 5 C 1.50702 * 126.35098 * 359.95863 * 4 3 2
6 6 C 1.53001 * 109.47007 * 270.29459 * 5 4 3
7 7 C 1.52999 * 109.46886 * 179.97438 * 6 5 4
8 8 C 1.50700 * 109.47279 * 179.97438 * 7 6 5
9 9 H 1.07998 * 119.99610 * 359.97438 * 8 7 6
10 10 C 1.37879 * 120.00353 * 179.97438 * 8 7 6
11 11 N 1.31513 * 119.99550 * 0.02562 * 10 8 7
12 12 Si 1.86795 * 119.99982 * 180.02562 * 10 8 7
13 13 H 1.48494 * 109.47335 * 60.00087 * 12 10 8
14 14 H 1.48503 * 109.46872 * 180.02562 * 12 10 8
15 15 H 1.48508 * 109.47139 * 300.00118 * 12 10 8
16 16 N 1.30299 * 107.30799 * 180.22459 * 4 3 2
17 17 N 1.28529 * 110.04833 * 359.77213 * 16 4 3
18 18 C 1.31208 * 109.86396 * 359.97438 * 17 16 4
19 19 N 1.38591 * 126.47573 * 179.97438 * 18 17 16
20 20 C 1.46334 * 110.99957 * 294.37493 * 19 18 17
21 21 C 1.53850 * 111.78026 * 181.56747 * 20 19 18
22 22 C 1.51599 * 107.00428 * 303.62616 * 21 20 19
23 23 H 1.09000 * 110.26265 * 303.24800 * 22 21 20
24 24 C 1.55514 * 106.74109 * 62.59813 * 22 21 20
25 25 H 1.08998 * 110.34233 * 51.72495 * 24 22 21
26 26 C 1.52811 * 101.62712 * 168.69321 * 24 22 21
27 27 C 1.55069 * 103.86679 * 331.83034 * 26 24 22
28 28 N 1.46508 * 117.39908 * 176.38074 * 22 21 20
29 29 C 1.46903 * 111.00301 * 80.49487 * 28 22 21
30 30 C 1.47680 * 110.99370 * 61.77467 * 19 18 17
31 31 H 1.09000 * 109.46900 * 299.99863 * 1 2 3
32 32 H 1.09001 * 109.46930 * 60.00005 * 1 2 3
33 33 H 1.08999 * 109.47288 * 179.97438 * 1 2 3
34 34 H 1.09000 * 109.47371 * 240.00383 * 2 1 3
35 35 H 1.09001 * 109.47383 * 119.99715 * 2 1 3
36 36 H 1.09003 * 109.46531 * 30.28666 * 5 4 3
37 37 H 1.08996 * 109.47391 * 150.28410 * 5 4 3
38 38 H 1.09003 * 109.46828 * 299.99026 * 6 5 4
39 39 H 1.08998 * 109.47590 * 59.99693 * 6 5 4
40 40 H 1.09002 * 109.47355 * 299.99906 * 7 6 5
41 41 H 1.09003 * 109.47441 * 59.99770 * 7 6 5
42 42 H 0.96998 * 119.99779 * 179.97438 * 11 10 8
43 43 H 1.09005 * 109.02039 * 302.15213 * 20 19 18
44 44 H 1.08997 * 109.02198 * 61.05054 * 20 19 18
45 45 H 1.08999 * 109.94501 * 184.25767 * 21 20 19
46 46 H 1.08990 * 109.94789 * 63.00314 * 21 20 19
47 47 H 1.09001 * 110.54890 * 90.42669 * 26 24 22
48 48 H 1.09001 * 110.54826 * 213.23787 * 26 24 22
49 49 H 1.09004 * 109.98994 * 122.02380 * 27 26 24
50 50 H 1.09006 * 109.99391 * 243.30125 * 27 26 24
51 51 H 1.08993 * 109.47118 * 59.99898 * 29 28 22
52 52 H 1.09000 * 109.47412 * 180.02562 * 29 28 22
53 53 H 1.09001 * 109.46516 * 299.99505 * 29 28 22
54 54 H 1.08996 * 109.94152 * 55.64860 * 30 19 18
55 55 H 1.09001 * 110.00501 * 294.46739 * 30 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0184 1.3812 0.0000
4 6 2.3153 2.1518 -1.0898
5 6 2.2022 1.7375 -2.5343
6 6 3.5214 1.1107 -2.9899
7 6 3.4064 0.6895 -4.4562
8 6 4.7059 0.0726 -4.9052
9 1 5.5315 -0.0103 -4.2139
10 6 4.8410 -0.3859 -6.1985
11 7 3.8358 -0.2844 -7.0404
12 14 6.4517 -1.1511 -6.7547
13 1 6.7484 -2.3422 -5.9191
14 1 6.3400 -1.5598 -8.1780
15 1 7.5472 -0.1591 -6.6095
16 7 2.7197 3.3089 -0.6478
17 7 2.6940 3.3232 0.6372
18 6 2.2679 2.1668 1.0875
19 7 2.1079 1.8085 2.4167
20 6 3.3978 1.7625 3.1063
21 6 3.2450 1.3286 4.5744
22 6 2.2734 2.2946 5.2234
23 1 2.6314 3.3186 5.1171
24 6 0.9156 2.1288 4.4835
25 1 0.6264 1.0783 4.4530
26 6 -0.0291 2.9116 5.3945
27 6 0.6246 2.7953 6.7959
28 7 1.8983 2.0395 6.6165
29 6 2.9335 2.5264 7.5380
30 6 1.1116 2.6725 3.0813
31 1 -0.3633 0.5138 0.8900
32 1 -0.3633 0.5138 -0.8900
33 1 -0.3634 -1.0276 -0.0005
34 1 1.8934 -0.5138 -0.8900
35 1 1.8934 -0.5138 0.8900
36 1 1.3980 1.0096 -2.6415
37 1 1.9846 2.6122 -3.1472
38 1 4.3257 1.8386 -2.8827
39 1 3.7389 0.2360 -2.3770
40 1 2.6021 -0.0385 -4.5632
41 1 3.1887 1.5640 -5.0695
42 1 3.9309 -0.6066 -7.9504
43 1 4.0499 1.0556 2.5932
44 1 3.8528 2.7524 3.0752
45 1 4.2101 1.3770 5.0788
46 1 2.8493 0.3142 4.6232
47 1 -0.0837 3.9548 5.0833
48 1 -1.0209 2.4595 5.3963
49 1 0.8335 3.7885 7.1933
50 1 -0.0378 2.2552 7.4724
51 1 3.0649 3.5999 7.4024
52 1 2.6300 2.3241 8.5652
53 1 3.8740 2.0160 7.3303
54 1 0.1688 2.6406 2.5353
55 1 1.4791 3.6976 3.1282
RHF calculation, no. of doubly occupied orbitals= 67
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001352421126.mol2 55
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:02:06
Heat of formation + Delta-G solvation = 61.381344 kcal
Electronic energy + Delta-G solvation = -31418.236701 eV
Core-core repulsion = 27490.177461 eV
Total energy + Delta-G solvation = -3928.059240 eV
No. of doubly occupied orbitals = 67
Molecular weight
(most abundant/longest-lived isotopes) = 347.238 amu
Computer time = 1.06 seconds
Orbital eigenvalues (eV)
-44.09642 -41.34766 -38.27368 -36.99651 -36.28455 -34.48202 -33.78108 -33.16298
-31.57608 -30.85714 -29.86460 -28.55064 -26.71963 -25.71499 -25.00946 -24.66149
-23.82296 -22.47708 -21.86743 -21.53215 -21.37847 -20.87115 -18.55396 -18.15252
-17.50943 -17.21754 -16.57532 -16.53808 -16.33528 -16.09084 -15.90493 -15.67510
-15.56083 -14.91030 -14.77662 -14.58972 -14.28528 -14.20650 -14.14148 -13.88451
-13.71729 -13.40718 -13.32583 -13.17771 -13.04880 -12.67749 -12.63624 -12.56304
-12.43114 -12.33076 -12.31951 -12.27936 -12.19400 -11.96417 -11.74175 -11.57847
-11.47751 -11.41019 -11.26671 -11.16237 -11.08808 -10.52924 -10.04701 -9.90630
-9.47948 -8.18593 -6.28594 0.64490 1.17660 1.40803 1.43143 1.50986
1.69173 2.41910 2.49285 2.88684 3.14777 3.32161 3.39060 3.61174
3.67583 3.84693 3.91041 3.92130 4.01664 4.06081 4.17316 4.20025
4.26169 4.32321 4.35507 4.41474 4.41973 4.50743 4.51179 4.53512
4.57387 4.57861 4.64195 4.67621 4.73085 4.83375 4.84049 4.85969
4.99067 5.01285 5.01829 5.04897 5.10598 5.15246 5.17494 5.19759
5.23777 5.30900 5.51114 5.54414 5.67679 5.74696 5.85456 5.86411
6.06697 6.17492 6.26664 6.86803 7.39883 7.63788 8.92481
Molecular weight = 347.24amu
Principal moments of inertia in cm(-1)
A = 0.021431 B = 0.002000 C = 0.001939
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1306.224696 B =13994.203494 C =14436.222656
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.157 4.157
2 C 0.098 3.902
3 N -0.457 5.457
4 C 0.201 3.799
5 C -0.024 4.024
6 C -0.084 4.084
7 C 0.028 3.972
8 C -0.544 4.544
9 H 0.054 0.946
10 C 0.003 3.997
11 N -0.928 5.928
12 Si 0.959 3.041
13 H -0.266 1.266
14 H -0.282 1.282
15 H -0.272 1.272
16 N -0.329 5.329
17 N -0.347 5.347
18 C 0.346 3.654
19 N -0.460 5.460
20 C 0.075 3.925
21 C -0.084 4.084
22 C 0.058 3.942
23 H 0.036 0.964
24 C -0.082 4.082
25 H 0.097 0.903
26 C -0.119 4.119
27 C 0.034 3.966
28 N -0.517 5.517
29 C 0.013 3.987
30 C 0.091 3.909
31 H 0.061 0.939
32 H 0.052 0.948
33 H 0.103 0.897
34 H 0.100 0.900
35 H 0.114 0.886
36 H 0.101 0.899
37 H 0.093 0.907
38 H 0.040 0.960
39 H 0.053 0.947
40 H 0.007 0.993
41 H -0.004 1.004
42 H 0.264 0.736
43 H 0.076 0.924
44 H 0.032 0.968
45 H 0.085 0.915
46 H 0.088 0.912
47 H 0.069 0.931
48 H 0.090 0.910
49 H 0.051 0.949
50 H 0.091 0.909
51 H 0.026 0.974
52 H 0.079 0.921
53 H 0.072 0.928
54 H 0.079 0.921
55 H 0.039 0.961
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.878 1.071 30.901 32.459
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.215 4.215
2 C -0.023 4.023
3 N -0.149 5.149
4 C -0.068 4.068
5 C -0.064 4.064
6 C -0.123 4.123
7 C -0.009 4.009
8 C -0.582 4.582
9 H 0.072 0.928
10 C -0.195 4.195
11 N -0.568 5.568
12 Si 0.784 3.216
13 H -0.191 1.191
14 H -0.207 1.207
15 H -0.198 1.198
16 N -0.170 5.170
17 N -0.191 5.191
18 C -0.011 4.011
19 N -0.187 5.187
20 C -0.052 4.052
21 C -0.123 4.123
22 C -0.051 4.051
23 H 0.054 0.946
24 C -0.102 4.102
25 H 0.115 0.885
26 C -0.157 4.157
27 C -0.093 4.093
28 N -0.240 5.240
29 C -0.136 4.136
30 C -0.036 4.036
31 H 0.081 0.919
32 H 0.072 0.928
33 H 0.122 0.878
34 H 0.118 0.882
35 H 0.132 0.868
36 H 0.119 0.881
37 H 0.111 0.889
38 H 0.059 0.941
39 H 0.072 0.928
40 H 0.025 0.975
41 H 0.015 0.985
42 H 0.073 0.927
43 H 0.094 0.906
44 H 0.050 0.950
45 H 0.103 0.897
46 H 0.106 0.894
47 H 0.088 0.912
48 H 0.109 0.891
49 H 0.069 0.931
50 H 0.109 0.891
51 H 0.045 0.955
52 H 0.098 0.902
53 H 0.090 0.910
54 H 0.098 0.902
55 H 0.057 0.943
Dipole moment (debyes) X Y Z Total
from point charges -9.658 1.404 30.903 32.407
hybrid contribution 0.966 0.316 -0.975 1.408
sum -8.692 1.720 29.928 31.212
Atomic orbital electron populations
1.22067 0.92257 1.04741 1.02400 1.22207 0.97096 0.76948 1.06042
1.46643 1.48546 1.14674 1.05026 1.25119 1.00608 0.88439 0.92610
1.20153 0.99942 1.02382 0.83889 1.21345 0.94896 0.98682 0.97382
1.18976 0.95809 0.95094 0.91050 1.21615 1.00005 1.39691 0.96930
0.92778 1.25887 1.00116 0.96543 0.96944 1.70062 1.32933 1.47971
1.05835 0.85590 0.79643 0.79046 0.77310 1.19093 1.20696 1.19750
1.73973 1.20370 1.19376 1.03235 1.74440 1.20949 1.19842 1.03886
1.22350 1.02180 0.87616 0.88982 1.57991 1.12623 1.53443 0.94616
1.22064 0.87343 1.00586 0.95225 1.21271 0.99932 1.00096 0.90963
1.22398 0.96302 0.97125 0.89315 0.94592 1.21744 0.95257 1.01796
0.91358 0.88517 1.22187 0.99439 1.00538 0.93545 1.23368 0.91408
0.96976 0.97542 1.64699 1.04132 1.52801 1.02403 1.22583 0.95580
0.97873 0.97556 1.21873 0.93754 0.93422 0.94541 0.91949 0.92842
0.87836 0.88168 0.86760 0.88098 0.88871 0.94137 0.92836 0.97457
0.98532 0.92740 0.90574 0.94986 0.89662 0.89388 0.91241 0.89091
0.93104 0.89065 0.95522 0.90246 0.90957 0.90239 0.94263
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.47 10.24 71.98 0.74 -1.73 16
2 C 0.10 1.93 6.63 86.38 0.57 2.50 16
3 N -0.46 -12.63 2.81 -514.84 -1.45 -14.08 16
4 C 0.20 6.77 7.32 137.64 1.01 7.78 16
5 C -0.02 -0.80 5.41 29.85 0.16 -0.64 16
6 C -0.08 -3.43 5.14 30.59 0.16 -3.27 16
7 C 0.03 1.42 4.97 29.85 0.15 1.56 16
8 C -0.54 -30.70 9.11 25.60 0.23 -30.46 16
9 H 0.05 2.97 7.74 -2.91 -0.02 2.95 16
10 C 0.00 0.19 5.46 84.66 0.46 0.65 16
11 N -0.93 -55.39 13.29 21.45 0.28 -55.11 16
12 Si 0.96 44.07 29.54 68.60 2.03 46.10 16
13 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16
14 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16
15 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16
16 N -0.33 -12.83 12.18 -49.54 -0.60 -13.43 16
17 N -0.35 -12.49 12.21 -58.00 -0.71 -13.20 16
18 C 0.35 9.92 6.44 260.11 1.67 11.59 16
19 N -0.46 -9.86 4.55 -706.31 -3.21 -13.07 16
20 C 0.08 1.49 5.36 86.70 0.46 1.96 16
21 C -0.08 -1.22 6.06 30.42 0.18 -1.04 16
22 C 0.06 0.84 1.65 45.40 0.07 0.92 16
23 H 0.04 0.63 7.90 -2.39 -0.02 0.61 16
24 C -0.08 -1.14 2.66 -10.43 -0.03 -1.17 16
25 H 0.10 1.39 8.08 -2.39 -0.02 1.37 16
26 C -0.12 -1.27 6.63 31.24 0.21 -1.07 16
27 C 0.03 0.37 6.74 86.57 0.58 0.95 16
28 N -0.52 -6.84 5.51 -885.07 -4.87 -11.71 16
29 C 0.01 0.14 9.43 127.69 1.20 1.34 16
30 C 0.09 1.70 5.13 85.71 0.44 2.14 16
31 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16
32 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16
33 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16
34 H 0.10 2.02 7.82 -2.39 -0.02 2.00 16
35 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16
36 H 0.10 2.90 7.89 -2.39 -0.02 2.88 16
37 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16
38 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16
39 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16
40 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16
41 H 0.00 -0.21 8.14 -2.39 -0.02 -0.22 16
42 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16
43 H 0.08 1.57 8.13 -2.38 -0.02 1.55 16
44 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16
45 H 0.08 1.07 8.01 -2.39 -0.02 1.05 16
46 H 0.09 1.24 8.09 -2.39 -0.02 1.22 16
47 H 0.07 0.77 8.07 -2.39 -0.02 0.75 16
48 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16
49 H 0.05 0.52 7.69 -2.38 -0.02 0.50 16
50 H 0.09 0.82 8.14 -2.38 -0.02 0.80 16
51 H 0.03 0.30 7.95 -2.39 -0.02 0.28 16
52 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16
53 H 0.07 0.75 8.01 -2.39 -0.02 0.73 16
54 H 0.08 1.49 8.13 -2.39 -0.02 1.47 16
55 H 0.04 0.87 8.04 -2.39 -0.02 0.85 16
Total: -1.00 -70.18 431.45 0.58 -69.60
By element:
Atomic # 1 Polarization: 12.05 SS G_CDS: 0.83 Total: 12.88 kcal
Atomic # 6 Polarization: -16.26 SS G_CDS: 8.28 Total: -7.98 kcal
Atomic # 7 Polarization: -110.04 SS G_CDS: -10.56 Total: -120.60 kcal
Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal
Total: -70.18 0.58 -69.60 kcal
The number of atoms in the molecule is 55
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001352421126.mol2 55
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 130.985 kcal
(2) G-P(sol) polarization free energy of solvation -70.183 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.802 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.579 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.604 kcal
(6) G-S(sol) free energy of system = (1) + (5) 61.381 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.06 seconds