Wall clock time and date at job start Wed Apr 1 2020 05:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46501 * 109.47306 * 2 1 4 4 C 1.36733 * 127.13819 * 268.78721 * 3 2 1 5 5 C 1.50702 * 126.35098 * 359.95863 * 4 3 2 6 6 C 1.53001 * 109.47007 * 270.29459 * 5 4 3 7 7 C 1.52999 * 109.46886 * 179.97438 * 6 5 4 8 8 C 1.50700 * 109.47279 * 179.97438 * 7 6 5 9 9 H 1.07998 * 119.99610 * 359.97438 * 8 7 6 10 10 C 1.37879 * 120.00353 * 179.97438 * 8 7 6 11 11 N 1.31513 * 119.99550 * 0.02562 * 10 8 7 12 12 Si 1.86795 * 119.99982 * 180.02562 * 10 8 7 13 13 H 1.48494 * 109.47335 * 60.00087 * 12 10 8 14 14 H 1.48503 * 109.46872 * 180.02562 * 12 10 8 15 15 H 1.48508 * 109.47139 * 300.00118 * 12 10 8 16 16 N 1.30299 * 107.30799 * 180.22459 * 4 3 2 17 17 N 1.28529 * 110.04833 * 359.77213 * 16 4 3 18 18 C 1.31208 * 109.86396 * 359.97438 * 17 16 4 19 19 N 1.38591 * 126.47573 * 179.97438 * 18 17 16 20 20 C 1.46334 * 110.99957 * 294.37493 * 19 18 17 21 21 C 1.53850 * 111.78026 * 181.56747 * 20 19 18 22 22 C 1.51599 * 107.00428 * 303.62616 * 21 20 19 23 23 H 1.09000 * 110.26265 * 303.24800 * 22 21 20 24 24 C 1.55514 * 106.74109 * 62.59813 * 22 21 20 25 25 H 1.08998 * 110.34233 * 51.72495 * 24 22 21 26 26 C 1.52811 * 101.62712 * 168.69321 * 24 22 21 27 27 C 1.55069 * 103.86679 * 331.83034 * 26 24 22 28 28 N 1.46508 * 117.39908 * 176.38074 * 22 21 20 29 29 C 1.46903 * 111.00301 * 80.49487 * 28 22 21 30 30 C 1.47680 * 110.99370 * 61.77467 * 19 18 17 31 31 H 1.09000 * 109.46900 * 299.99863 * 1 2 3 32 32 H 1.09001 * 109.46930 * 60.00005 * 1 2 3 33 33 H 1.08999 * 109.47288 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.47371 * 240.00383 * 2 1 3 35 35 H 1.09001 * 109.47383 * 119.99715 * 2 1 3 36 36 H 1.09003 * 109.46531 * 30.28666 * 5 4 3 37 37 H 1.08996 * 109.47391 * 150.28410 * 5 4 3 38 38 H 1.09003 * 109.46828 * 299.99026 * 6 5 4 39 39 H 1.08998 * 109.47590 * 59.99693 * 6 5 4 40 40 H 1.09002 * 109.47355 * 299.99906 * 7 6 5 41 41 H 1.09003 * 109.47441 * 59.99770 * 7 6 5 42 42 H 0.96998 * 119.99779 * 179.97438 * 11 10 8 43 43 H 1.09005 * 109.02039 * 302.15213 * 20 19 18 44 44 H 1.08997 * 109.02198 * 61.05054 * 20 19 18 45 45 H 1.08999 * 109.94501 * 184.25767 * 21 20 19 46 46 H 1.08990 * 109.94789 * 63.00314 * 21 20 19 47 47 H 1.09001 * 110.54890 * 90.42669 * 26 24 22 48 48 H 1.09001 * 110.54826 * 213.23787 * 26 24 22 49 49 H 1.09004 * 109.98994 * 122.02380 * 27 26 24 50 50 H 1.09006 * 109.99391 * 243.30125 * 27 26 24 51 51 H 1.08993 * 109.47118 * 59.99898 * 29 28 22 52 52 H 1.09000 * 109.47412 * 180.02562 * 29 28 22 53 53 H 1.09001 * 109.46516 * 299.99505 * 29 28 22 54 54 H 1.08996 * 109.94152 * 55.64860 * 30 19 18 55 55 H 1.09001 * 110.00501 * 294.46739 * 30 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3153 2.1518 -1.0898 5 6 2.2022 1.7375 -2.5343 6 6 3.5214 1.1107 -2.9899 7 6 3.4064 0.6895 -4.4562 8 6 4.7059 0.0726 -4.9052 9 1 5.5315 -0.0103 -4.2139 10 6 4.8410 -0.3859 -6.1985 11 7 3.8358 -0.2844 -7.0404 12 14 6.4517 -1.1511 -6.7547 13 1 6.7484 -2.3422 -5.9191 14 1 6.3400 -1.5598 -8.1780 15 1 7.5472 -0.1591 -6.6095 16 7 2.7197 3.3089 -0.6478 17 7 2.6940 3.3232 0.6372 18 6 2.2679 2.1668 1.0875 19 7 2.1079 1.8085 2.4167 20 6 3.3978 1.7625 3.1063 21 6 3.2450 1.3286 4.5744 22 6 2.2734 2.2946 5.2234 23 1 2.6314 3.3186 5.1171 24 6 0.9156 2.1288 4.4835 25 1 0.6264 1.0783 4.4530 26 6 -0.0291 2.9116 5.3945 27 6 0.6246 2.7953 6.7959 28 7 1.8983 2.0395 6.6165 29 6 2.9335 2.5264 7.5380 30 6 1.1116 2.6725 3.0813 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 1.3980 1.0096 -2.6415 37 1 1.9846 2.6122 -3.1472 38 1 4.3257 1.8386 -2.8827 39 1 3.7389 0.2360 -2.3770 40 1 2.6021 -0.0385 -4.5632 41 1 3.1887 1.5640 -5.0695 42 1 3.9309 -0.6066 -7.9504 43 1 4.0499 1.0556 2.5932 44 1 3.8528 2.7524 3.0752 45 1 4.2101 1.3770 5.0788 46 1 2.8493 0.3142 4.6232 47 1 -0.0837 3.9548 5.0833 48 1 -1.0209 2.4595 5.3963 49 1 0.8335 3.7885 7.1933 50 1 -0.0378 2.2552 7.4724 51 1 3.0649 3.5999 7.4024 52 1 2.6300 2.3241 8.5652 53 1 3.8740 2.0160 7.3303 54 1 0.1688 2.6406 2.5353 55 1 1.4791 3.6976 3.1282 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001352421126.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:06 Heat of formation + Delta-G solvation = 61.381344 kcal Electronic energy + Delta-G solvation = -31418.236701 eV Core-core repulsion = 27490.177461 eV Total energy + Delta-G solvation = -3928.059240 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.238 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -44.09642 -41.34766 -38.27368 -36.99651 -36.28455 -34.48202 -33.78108 -33.16298 -31.57608 -30.85714 -29.86460 -28.55064 -26.71963 -25.71499 -25.00946 -24.66149 -23.82296 -22.47708 -21.86743 -21.53215 -21.37847 -20.87115 -18.55396 -18.15252 -17.50943 -17.21754 -16.57532 -16.53808 -16.33528 -16.09084 -15.90493 -15.67510 -15.56083 -14.91030 -14.77662 -14.58972 -14.28528 -14.20650 -14.14148 -13.88451 -13.71729 -13.40718 -13.32583 -13.17771 -13.04880 -12.67749 -12.63624 -12.56304 -12.43114 -12.33076 -12.31951 -12.27936 -12.19400 -11.96417 -11.74175 -11.57847 -11.47751 -11.41019 -11.26671 -11.16237 -11.08808 -10.52924 -10.04701 -9.90630 -9.47948 -8.18593 -6.28594 0.64490 1.17660 1.40803 1.43143 1.50986 1.69173 2.41910 2.49285 2.88684 3.14777 3.32161 3.39060 3.61174 3.67583 3.84693 3.91041 3.92130 4.01664 4.06081 4.17316 4.20025 4.26169 4.32321 4.35507 4.41474 4.41973 4.50743 4.51179 4.53512 4.57387 4.57861 4.64195 4.67621 4.73085 4.83375 4.84049 4.85969 4.99067 5.01285 5.01829 5.04897 5.10598 5.15246 5.17494 5.19759 5.23777 5.30900 5.51114 5.54414 5.67679 5.74696 5.85456 5.86411 6.06697 6.17492 6.26664 6.86803 7.39883 7.63788 8.92481 Molecular weight = 347.24amu Principal moments of inertia in cm(-1) A = 0.021431 B = 0.002000 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.224696 B =13994.203494 C =14436.222656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.098 3.902 3 N -0.457 5.457 4 C 0.201 3.799 5 C -0.024 4.024 6 C -0.084 4.084 7 C 0.028 3.972 8 C -0.544 4.544 9 H 0.054 0.946 10 C 0.003 3.997 11 N -0.928 5.928 12 Si 0.959 3.041 13 H -0.266 1.266 14 H -0.282 1.282 15 H -0.272 1.272 16 N -0.329 5.329 17 N -0.347 5.347 18 C 0.346 3.654 19 N -0.460 5.460 20 C 0.075 3.925 21 C -0.084 4.084 22 C 0.058 3.942 23 H 0.036 0.964 24 C -0.082 4.082 25 H 0.097 0.903 26 C -0.119 4.119 27 C 0.034 3.966 28 N -0.517 5.517 29 C 0.013 3.987 30 C 0.091 3.909 31 H 0.061 0.939 32 H 0.052 0.948 33 H 0.103 0.897 34 H 0.100 0.900 35 H 0.114 0.886 36 H 0.101 0.899 37 H 0.093 0.907 38 H 0.040 0.960 39 H 0.053 0.947 40 H 0.007 0.993 41 H -0.004 1.004 42 H 0.264 0.736 43 H 0.076 0.924 44 H 0.032 0.968 45 H 0.085 0.915 46 H 0.088 0.912 47 H 0.069 0.931 48 H 0.090 0.910 49 H 0.051 0.949 50 H 0.091 0.909 51 H 0.026 0.974 52 H 0.079 0.921 53 H 0.072 0.928 54 H 0.079 0.921 55 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.878 1.071 30.901 32.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.023 4.023 3 N -0.149 5.149 4 C -0.068 4.068 5 C -0.064 4.064 6 C -0.123 4.123 7 C -0.009 4.009 8 C -0.582 4.582 9 H 0.072 0.928 10 C -0.195 4.195 11 N -0.568 5.568 12 Si 0.784 3.216 13 H -0.191 1.191 14 H -0.207 1.207 15 H -0.198 1.198 16 N -0.170 5.170 17 N -0.191 5.191 18 C -0.011 4.011 19 N -0.187 5.187 20 C -0.052 4.052 21 C -0.123 4.123 22 C -0.051 4.051 23 H 0.054 0.946 24 C -0.102 4.102 25 H 0.115 0.885 26 C -0.157 4.157 27 C -0.093 4.093 28 N -0.240 5.240 29 C -0.136 4.136 30 C -0.036 4.036 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.122 0.878 34 H 0.118 0.882 35 H 0.132 0.868 36 H 0.119 0.881 37 H 0.111 0.889 38 H 0.059 0.941 39 H 0.072 0.928 40 H 0.025 0.975 41 H 0.015 0.985 42 H 0.073 0.927 43 H 0.094 0.906 44 H 0.050 0.950 45 H 0.103 0.897 46 H 0.106 0.894 47 H 0.088 0.912 48 H 0.109 0.891 49 H 0.069 0.931 50 H 0.109 0.891 51 H 0.045 0.955 52 H 0.098 0.902 53 H 0.090 0.910 54 H 0.098 0.902 55 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -9.658 1.404 30.903 32.407 hybrid contribution 0.966 0.316 -0.975 1.408 sum -8.692 1.720 29.928 31.212 Atomic orbital electron populations 1.22067 0.92257 1.04741 1.02400 1.22207 0.97096 0.76948 1.06042 1.46643 1.48546 1.14674 1.05026 1.25119 1.00608 0.88439 0.92610 1.20153 0.99942 1.02382 0.83889 1.21345 0.94896 0.98682 0.97382 1.18976 0.95809 0.95094 0.91050 1.21615 1.00005 1.39691 0.96930 0.92778 1.25887 1.00116 0.96543 0.96944 1.70062 1.32933 1.47971 1.05835 0.85590 0.79643 0.79046 0.77310 1.19093 1.20696 1.19750 1.73973 1.20370 1.19376 1.03235 1.74440 1.20949 1.19842 1.03886 1.22350 1.02180 0.87616 0.88982 1.57991 1.12623 1.53443 0.94616 1.22064 0.87343 1.00586 0.95225 1.21271 0.99932 1.00096 0.90963 1.22398 0.96302 0.97125 0.89315 0.94592 1.21744 0.95257 1.01796 0.91358 0.88517 1.22187 0.99439 1.00538 0.93545 1.23368 0.91408 0.96976 0.97542 1.64699 1.04132 1.52801 1.02403 1.22583 0.95580 0.97873 0.97556 1.21873 0.93754 0.93422 0.94541 0.91949 0.92842 0.87836 0.88168 0.86760 0.88098 0.88871 0.94137 0.92836 0.97457 0.98532 0.92740 0.90574 0.94986 0.89662 0.89388 0.91241 0.89091 0.93104 0.89065 0.95522 0.90246 0.90957 0.90239 0.94263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.47 10.24 71.98 0.74 -1.73 16 2 C 0.10 1.93 6.63 86.38 0.57 2.50 16 3 N -0.46 -12.63 2.81 -514.84 -1.45 -14.08 16 4 C 0.20 6.77 7.32 137.64 1.01 7.78 16 5 C -0.02 -0.80 5.41 29.85 0.16 -0.64 16 6 C -0.08 -3.43 5.14 30.59 0.16 -3.27 16 7 C 0.03 1.42 4.97 29.85 0.15 1.56 16 8 C -0.54 -30.70 9.11 25.60 0.23 -30.46 16 9 H 0.05 2.97 7.74 -2.91 -0.02 2.95 16 10 C 0.00 0.19 5.46 84.66 0.46 0.65 16 11 N -0.93 -55.39 13.29 21.45 0.28 -55.11 16 12 Si 0.96 44.07 29.54 68.60 2.03 46.10 16 13 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 14 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 15 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 16 N -0.33 -12.83 12.18 -49.54 -0.60 -13.43 16 17 N -0.35 -12.49 12.21 -58.00 -0.71 -13.20 16 18 C 0.35 9.92 6.44 260.11 1.67 11.59 16 19 N -0.46 -9.86 4.55 -706.31 -3.21 -13.07 16 20 C 0.08 1.49 5.36 86.70 0.46 1.96 16 21 C -0.08 -1.22 6.06 30.42 0.18 -1.04 16 22 C 0.06 0.84 1.65 45.40 0.07 0.92 16 23 H 0.04 0.63 7.90 -2.39 -0.02 0.61 16 24 C -0.08 -1.14 2.66 -10.43 -0.03 -1.17 16 25 H 0.10 1.39 8.08 -2.39 -0.02 1.37 16 26 C -0.12 -1.27 6.63 31.24 0.21 -1.07 16 27 C 0.03 0.37 6.74 86.57 0.58 0.95 16 28 N -0.52 -6.84 5.51 -885.07 -4.87 -11.71 16 29 C 0.01 0.14 9.43 127.69 1.20 1.34 16 30 C 0.09 1.70 5.13 85.71 0.44 2.14 16 31 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.10 2.02 7.82 -2.39 -0.02 2.00 16 35 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.10 2.90 7.89 -2.39 -0.02 2.88 16 37 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 38 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 41 H 0.00 -0.21 8.14 -2.39 -0.02 -0.22 16 42 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 43 H 0.08 1.57 8.13 -2.38 -0.02 1.55 16 44 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.08 1.07 8.01 -2.39 -0.02 1.05 16 46 H 0.09 1.24 8.09 -2.39 -0.02 1.22 16 47 H 0.07 0.77 8.07 -2.39 -0.02 0.75 16 48 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 49 H 0.05 0.52 7.69 -2.38 -0.02 0.50 16 50 H 0.09 0.82 8.14 -2.38 -0.02 0.80 16 51 H 0.03 0.30 7.95 -2.39 -0.02 0.28 16 52 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 53 H 0.07 0.75 8.01 -2.39 -0.02 0.73 16 54 H 0.08 1.49 8.13 -2.39 -0.02 1.47 16 55 H 0.04 0.87 8.04 -2.39 -0.02 0.85 16 Total: -1.00 -70.18 431.45 0.58 -69.60 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: 0.83 Total: 12.88 kcal Atomic # 6 Polarization: -16.26 SS G_CDS: 8.28 Total: -7.98 kcal Atomic # 7 Polarization: -110.04 SS G_CDS: -10.56 Total: -120.60 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -70.18 0.58 -69.60 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352421126.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.985 kcal (2) G-P(sol) polarization free energy of solvation -70.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds