Wall clock time and date at job start Wed Apr 1 2020 05:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46495 * 109.47197 * 2 1 4 4 C 1.36738 * 127.13820 * 85.45568 * 3 2 1 5 5 C 1.50705 * 126.34325 * 359.96324 * 4 3 2 6 6 C 1.53002 * 109.47001 * 90.00433 * 5 4 3 7 7 C 1.52997 * 109.46742 * 179.97438 * 6 5 4 8 8 C 1.50703 * 109.47148 * 179.97438 * 7 6 5 9 9 H 1.07998 * 119.99863 * 0.02562 * 8 7 6 10 10 C 1.37874 * 120.00656 * 179.97438 * 8 7 6 11 11 N 1.31508 * 120.00653 * 180.02562 * 10 8 7 12 12 Si 1.86808 * 119.99466 * 0.02562 * 10 8 7 13 13 H 1.48500 * 109.47007 * 90.00097 * 12 10 8 14 14 H 1.48497 * 109.46923 * 210.00174 * 12 10 8 15 15 H 1.48494 * 109.47197 * 330.00055 * 12 10 8 16 16 N 1.30292 * 107.30604 * 179.83555 * 4 3 2 17 17 N 1.28527 * 110.05167 * 0.43597 * 16 4 3 18 18 C 1.31215 * 109.86338 * 359.72604 * 17 16 4 19 19 N 1.38575 * 126.47227 * 180.02562 * 18 17 16 20 20 C 1.47166 * 111.00317 * 106.18733 * 19 18 17 21 21 C 1.52681 * 108.51783 * 171.28469 * 20 19 18 22 22 C 1.53156 * 110.61168 * 61.41972 * 21 20 19 23 23 H 1.09010 * 112.37360 * 73.82094 * 22 21 20 24 24 C 1.54065 * 110.43507 * 308.44233 * 22 21 20 25 25 H 1.08997 * 109.72485 * 169.52820 * 24 22 21 26 26 C 1.54321 * 102.24656 * 285.81629 * 24 22 21 27 27 C 1.54641 * 102.34646 * 322.85415 * 26 24 22 28 28 N 1.47579 * 107.21333 * 21.70246 * 27 26 24 29 29 C 1.46897 * 111.00111 * 125.05320 * 28 27 26 30 30 C 1.46664 * 111.00558 * 343.71513 * 19 18 17 31 31 H 1.09004 * 109.46673 * 300.39902 * 1 2 3 32 32 H 1.08992 * 109.47057 * 60.40054 * 1 2 3 33 33 H 1.08996 * 109.47046 * 180.40283 * 1 2 3 34 34 H 1.08997 * 109.47158 * 120.00421 * 2 1 3 35 35 H 1.09005 * 109.47189 * 239.99622 * 2 1 3 36 36 H 1.08999 * 109.46953 * 209.99885 * 5 4 3 37 37 H 1.08997 * 109.47174 * 329.99734 * 5 4 3 38 38 H 1.08999 * 109.46820 * 299.99534 * 6 5 4 39 39 H 1.08998 * 109.47235 * 59.99824 * 6 5 4 40 40 H 1.08999 * 109.47254 * 299.99478 * 7 6 5 41 41 H 1.08998 * 109.47228 * 60.00030 * 7 6 5 42 42 H 0.97000 * 120.00314 * 180.02562 * 11 10 8 43 43 H 1.08998 * 109.62689 * 290.99538 * 20 19 18 44 44 H 1.09001 * 109.62478 * 51.57331 * 20 19 18 45 45 H 1.08997 * 109.24881 * 301.12739 * 21 20 19 46 46 H 1.09002 * 109.24528 * 181.71197 * 21 20 19 47 47 H 1.09001 * 110.83083 * 81.07042 * 26 24 22 48 48 H 1.09000 * 110.82802 * 204.63948 * 26 24 22 49 49 H 1.08997 * 109.89019 * 262.29895 * 27 26 24 50 50 H 1.09004 * 110.02489 * 141.17788 * 27 26 24 51 51 H 1.09000 * 109.47145 * 299.59446 * 29 28 27 52 52 H 1.09004 * 109.47203 * 59.59071 * 29 28 27 53 53 H 1.08996 * 109.47591 * 179.59511 * 29 28 27 54 54 H 1.09010 * 109.04630 * 304.50180 * 30 19 18 55 55 H 1.08999 * 109.05138 * 63.38750 * 30 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2121 2.1883 1.0866 5 6 1.9606 1.8227 2.5269 6 6 3.2310 1.2191 3.1291 7 6 2.9758 0.8486 4.5914 8 6 4.2269 0.2534 5.1846 9 1 5.1152 0.1502 4.5792 10 6 4.2378 -0.1584 6.5003 11 7 5.3296 -0.6773 7.0180 12 14 2.7013 0.0208 7.5477 13 1 1.8756 -1.2077 7.4294 14 1 3.0903 0.2211 8.9668 15 1 1.9169 1.1915 7.0796 16 7 2.6571 3.3310 0.6463 17 7 2.7482 3.3040 -0.6355 18 6 2.3686 2.1311 -1.0849 19 7 2.3313 1.7296 -2.4106 20 6 3.4274 0.7941 -2.7096 21 6 3.2089 0.2223 -4.1083 22 6 3.2324 1.3384 -5.1568 23 1 4.2390 1.7144 -5.3402 24 6 2.2667 2.4709 -4.7586 25 1 2.4258 3.3342 -5.4046 26 6 0.8879 1.8461 -5.0589 27 6 1.1672 1.0300 -6.3424 28 7 2.6203 0.7767 -6.3914 29 6 2.9004 -0.6604 -6.5110 30 6 2.4027 2.8844 -3.3119 31 1 -0.3633 0.5200 0.8864 32 1 -0.3633 0.5076 -0.8935 33 1 -0.3633 -1.0276 0.0072 34 1 1.8933 -0.5139 0.8899 35 1 1.8934 -0.5139 -0.8900 36 1 1.6830 2.7166 3.0854 37 1 1.1513 1.0946 2.5809 38 1 3.5086 0.3252 2.5706 39 1 4.0403 1.9473 3.0751 40 1 2.6985 1.7427 5.1497 41 1 2.1665 0.1205 4.6459 42 1 5.3371 -0.9673 7.9436 43 1 4.3798 1.3230 -2.6748 44 1 3.4276 -0.0149 -1.9791 45 1 2.2439 -0.2833 -4.1431 46 1 3.9984 -0.4959 -4.3301 47 1 0.5729 1.1929 -4.2451 48 1 0.1440 2.6204 -5.2460 49 1 0.8605 1.6008 -7.2189 50 1 0.6267 0.0840 -6.3083 51 1 2.4892 -1.1838 -5.6478 52 1 2.4416 -1.0455 -7.4217 53 1 3.9780 -0.8184 -6.5522 54 1 1.6006 3.5796 -3.0636 55 1 3.3610 3.3850 -3.1735 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001352421128.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:13 Heat of formation + Delta-G solvation = 70.831646 kcal Electronic energy + Delta-G solvation = -31889.453013 eV Core-core repulsion = 27961.803569 eV Total energy + Delta-G solvation = -3927.649444 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.238 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -44.10564 -41.58870 -38.25524 -37.06451 -36.29555 -34.46465 -33.85409 -32.85647 -31.65145 -30.95185 -29.95681 -28.77001 -26.97487 -25.70458 -25.09681 -24.60528 -23.96358 -22.36929 -22.02249 -21.51949 -21.43460 -19.79547 -18.94635 -18.57594 -17.59814 -17.31715 -16.65562 -16.45860 -16.32651 -16.20215 -15.84929 -15.68458 -15.22543 -14.97049 -14.87110 -14.69236 -14.34863 -14.15663 -14.13232 -13.95653 -13.68921 -13.55807 -13.42751 -13.22675 -12.91734 -12.88899 -12.69822 -12.57392 -12.48585 -12.33194 -12.29667 -11.98788 -11.85223 -11.80863 -11.75335 -11.69085 -11.49776 -11.38355 -11.35811 -11.34743 -11.11647 -10.74430 -10.58866 -9.45886 -9.19930 -8.27474 -6.32445 0.68558 1.18273 1.38729 1.42545 1.54135 1.72127 2.38940 2.54433 2.95954 3.08333 3.32694 3.46702 3.55449 3.62020 3.72818 3.83255 3.94219 3.99950 4.01589 4.15274 4.21505 4.25208 4.26714 4.30122 4.35550 4.43567 4.44510 4.50990 4.54291 4.57514 4.60141 4.65558 4.68845 4.74192 4.81049 4.82721 4.91559 4.93275 4.97044 5.01178 5.04027 5.07733 5.09900 5.13997 5.17556 5.31579 5.34301 5.44396 5.50871 5.57749 5.61396 5.68169 5.96843 6.13221 6.14501 6.29349 6.75805 7.32164 7.68580 8.89611 Molecular weight = 347.24amu Principal moments of inertia in cm(-1) A = 0.020645 B = 0.002169 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.966431 B =12908.924628 C =13141.821419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.096 3.904 3 N -0.467 5.467 4 C 0.196 3.804 5 C -0.025 4.025 6 C -0.082 4.082 7 C -0.009 4.009 8 C -0.534 4.534 9 H 0.024 0.976 10 C 0.000 4.000 11 N -0.955 5.955 12 Si 0.954 3.046 13 H -0.261 1.261 14 H -0.289 1.289 15 H -0.241 1.241 16 N -0.328 5.328 17 N -0.356 5.356 18 C 0.350 3.650 19 N -0.434 5.434 20 C 0.055 3.945 21 C -0.125 4.125 22 C 0.077 3.923 23 H 0.095 0.905 24 C -0.083 4.083 25 H 0.096 0.904 26 C -0.125 4.125 27 C 0.042 3.958 28 N -0.542 5.542 29 C 0.012 3.988 30 C 0.086 3.914 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.111 0.889 36 H 0.100 0.900 37 H 0.108 0.892 38 H 0.049 0.951 39 H 0.036 0.964 40 H 0.024 0.976 41 H 0.034 0.966 42 H 0.266 0.734 43 H 0.042 0.958 44 H 0.081 0.919 45 H 0.081 0.919 46 H 0.090 0.910 47 H 0.072 0.928 48 H 0.079 0.921 49 H 0.078 0.922 50 H 0.059 0.941 51 H 0.042 0.958 52 H 0.070 0.930 53 H 0.070 0.930 54 H 0.075 0.925 55 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.999 -1.303 -29.512 32.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.025 4.025 3 N -0.161 5.161 4 C -0.073 4.073 5 C -0.065 4.065 6 C -0.121 4.121 7 C -0.046 4.046 8 C -0.572 4.572 9 H 0.043 0.957 10 C -0.196 4.196 11 N -0.596 5.596 12 Si 0.777 3.223 13 H -0.186 1.186 14 H -0.215 1.215 15 H -0.164 1.164 16 N -0.167 5.167 17 N -0.200 5.200 18 C -0.008 4.008 19 N -0.159 5.159 20 C -0.073 4.073 21 C -0.163 4.163 22 C -0.031 4.031 23 H 0.113 0.887 24 C -0.103 4.103 25 H 0.115 0.885 26 C -0.163 4.163 27 C -0.085 4.085 28 N -0.265 5.265 29 C -0.136 4.136 30 C -0.041 4.041 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.122 0.878 34 H 0.120 0.880 35 H 0.129 0.871 36 H 0.118 0.882 37 H 0.126 0.874 38 H 0.068 0.932 39 H 0.055 0.945 40 H 0.043 0.957 41 H 0.052 0.948 42 H 0.074 0.926 43 H 0.060 0.940 44 H 0.099 0.901 45 H 0.099 0.901 46 H 0.109 0.891 47 H 0.090 0.910 48 H 0.097 0.903 49 H 0.097 0.903 50 H 0.078 0.922 51 H 0.060 0.940 52 H 0.089 0.911 53 H 0.089 0.911 54 H 0.094 0.906 55 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -13.676 0.000 -29.968 32.941 hybrid contribution 0.193 -1.192 1.663 2.055 sum -13.483 -1.193 -28.305 31.375 Atomic orbital electron populations 1.22072 0.92153 1.04698 1.02620 1.22254 0.97305 0.77062 1.05924 1.46453 1.49768 1.14757 1.05097 1.25110 1.01851 0.87702 0.92651 1.20212 0.99437 1.03253 0.83597 1.21219 0.95644 0.98905 0.96317 1.19518 0.95468 0.96539 0.93083 1.21483 0.98432 1.40421 0.96832 0.95747 1.26100 0.99944 0.94122 0.99472 1.70085 1.30448 1.43906 1.15147 0.85599 0.79236 0.80432 0.77044 1.18562 1.21549 1.16369 1.73916 1.19190 1.20351 1.03252 1.74467 1.22674 1.19172 1.03724 1.22708 1.00435 0.89004 0.88623 1.59265 1.44553 1.16929 0.95166 1.22365 0.90677 0.94970 0.99258 1.22177 1.03665 0.98749 0.91742 1.22745 0.98688 0.93657 0.88012 0.88737 1.21591 0.96273 0.99065 0.93356 0.88533 1.22640 0.96341 0.99801 0.97535 1.22901 0.87847 0.99776 0.98022 1.64008 1.10600 1.15424 1.36486 1.22663 1.02238 0.87365 1.01348 1.21397 1.01928 0.89864 0.90928 0.92355 0.92239 0.87847 0.87980 0.87109 0.88166 0.87376 0.93172 0.94496 0.95724 0.94770 0.92563 0.94003 0.90085 0.90079 0.89137 0.90969 0.90255 0.90332 0.92207 0.93996 0.91118 0.91127 0.90637 0.93857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.19 10.24 71.98 0.74 -1.46 16 2 C 0.10 1.67 6.47 86.38 0.56 2.23 16 3 N -0.47 -12.05 2.81 -514.86 -1.45 -13.49 16 4 C 0.20 6.20 7.32 137.64 1.01 7.21 16 5 C -0.03 -0.75 5.51 29.85 0.16 -0.59 16 6 C -0.08 -3.11 5.14 30.59 0.16 -2.95 16 7 C -0.01 -0.38 4.04 29.85 0.12 -0.26 16 8 C -0.53 -30.55 9.66 25.60 0.25 -30.30 16 9 H 0.02 1.56 7.99 -2.91 -0.02 1.54 16 10 C 0.00 -0.01 5.47 84.65 0.46 0.46 16 11 N -0.96 -60.08 13.96 21.44 0.30 -59.78 16 12 Si 0.95 43.01 27.47 68.60 1.88 44.89 16 13 H -0.26 -11.02 7.11 99.48 0.71 -10.32 16 14 H -0.29 -13.05 7.11 99.48 0.71 -12.35 16 15 H -0.24 -9.87 6.54 99.48 0.65 -9.22 16 16 N -0.33 -12.34 12.18 -49.54 -0.60 -12.94 16 17 N -0.36 -12.42 11.39 -58.01 -0.66 -13.08 16 18 C 0.35 9.59 6.90 260.12 1.79 11.39 16 19 N -0.43 -8.66 4.26 -710.19 -3.02 -11.68 16 20 C 0.05 0.92 5.23 86.15 0.45 1.37 16 21 C -0.12 -1.47 3.65 30.54 0.11 -1.36 16 22 C 0.08 0.99 3.76 44.96 0.17 1.16 16 23 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 24 C -0.08 -1.14 3.01 -10.61 -0.03 -1.17 16 25 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 26 C -0.12 -1.48 5.86 31.60 0.19 -1.29 16 27 C 0.04 0.46 6.63 86.73 0.57 1.03 16 28 N -0.54 -6.70 5.44 -884.48 -4.81 -11.51 16 29 C 0.01 0.11 8.10 127.69 1.03 1.15 16 30 C 0.09 1.64 4.26 85.72 0.36 2.00 16 31 H 0.06 0.91 7.93 -2.39 -0.02 0.89 16 32 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.10 1.79 8.05 -2.39 -0.02 1.77 16 35 H 0.11 1.54 6.35 -2.38 -0.02 1.53 16 36 H 0.10 2.93 8.14 -2.39 -0.02 2.91 16 37 H 0.11 2.53 7.76 -2.39 -0.02 2.52 16 38 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.02 1.07 7.20 -2.39 -0.02 1.06 16 41 H 0.03 1.38 7.57 -2.39 -0.02 1.36 16 42 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 43 H 0.04 0.83 8.08 -2.39 -0.02 0.81 16 44 H 0.08 1.33 6.40 -2.39 -0.02 1.32 16 45 H 0.08 0.94 5.87 -2.39 -0.01 0.93 16 46 H 0.09 0.88 7.36 -2.39 -0.02 0.86 16 47 H 0.07 0.98 7.24 -2.39 -0.02 0.96 16 48 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 49 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 50 H 0.06 0.58 7.59 -2.38 -0.02 0.56 16 51 H 0.04 0.36 5.83 -2.39 -0.01 0.35 16 52 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 53 H 0.07 0.64 8.00 -2.39 -0.02 0.62 16 54 H 0.08 1.60 8.11 -2.38 -0.02 1.58 16 55 H 0.04 0.96 8.01 -2.39 -0.02 0.94 16 Total: -1.00 -74.14 414.56 0.54 -73.60 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: 0.80 Total: 15.39 kcal Atomic # 6 Polarization: -19.50 SS G_CDS: 8.11 Total: -11.39 kcal Atomic # 7 Polarization: -112.24 SS G_CDS: -10.25 Total: -122.49 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 1.88 Total: 44.89 kcal Total: -74.14 0.54 -73.60 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352421128.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.433 kcal (2) G-P(sol) polarization free energy of solvation -74.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds