Wall clock time and date at job start Wed Apr 1 2020 05:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50699 * 120.00050 * 2 1 4 4 C 1.53001 * 109.47076 * 359.97438 * 3 2 1 5 5 C 1.52998 * 109.47573 * 239.99796 * 3 2 1 6 6 C 1.53003 * 109.47468 * 119.99623 * 3 2 1 7 7 C 1.50696 * 109.47431 * 173.51971 * 6 3 2 8 8 N 1.30296 * 126.34632 * 83.11904 * 7 6 3 9 9 N 1.28527 * 110.05660 * 179.69420 * 8 7 6 10 10 C 1.31218 * 109.85565 * 0.44731 * 9 8 7 11 11 N 1.38577 * 126.46935 * 179.82164 * 10 9 8 12 12 C 1.46961 * 111.00134 * 305.79500 * 11 10 9 13 13 C 1.53049 * 109.36270 * 183.19015 * 12 11 10 14 14 N 1.46955 * 109.36693 * 301.59693 * 13 12 11 15 15 C 1.46895 * 111.00505 * 183.19164 * 14 13 12 16 16 C 1.50697 * 109.47609 * 170.00265 * 15 14 13 17 17 H 1.07996 * 119.99763 * 359.97438 * 16 15 14 18 18 C 1.37873 * 120.00158 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00361 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99925 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47101 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.47172 * 120.00258 * 20 18 16 23 23 H 1.48500 * 109.47425 * 240.00186 * 20 18 16 24 24 C 1.46961 * 110.87855 * 59.32235 * 14 13 12 25 25 C 1.46955 * 111.00221 * 69.59471 * 11 10 9 26 26 N 1.36444 * 107.05640 * 359.56598 * 10 9 8 27 27 C 1.46501 * 127.14132 * 180.27769 * 26 10 9 28 28 C 1.53004 * 109.47028 * 97.49567 * 27 26 10 29 29 H 1.08001 * 119.99509 * 179.97438 * 1 2 3 30 30 H 1.08001 * 120.00253 * 0.02562 * 1 2 3 31 31 H 1.08001 * 120.00253 * 179.97438 * 2 1 3 32 32 H 1.08999 * 109.47245 * 182.20932 * 4 3 2 33 33 H 1.08997 * 109.46837 * 302.20923 * 4 3 2 34 34 H 1.08997 * 109.47206 * 62.20831 * 4 3 2 35 35 H 1.09007 * 109.46967 * 300.00405 * 5 3 2 36 36 H 1.08999 * 109.46893 * 59.99372 * 5 3 2 37 37 H 1.08995 * 109.47726 * 180.02562 * 5 3 2 38 38 H 1.09005 * 109.46719 * 53.51859 * 6 3 2 39 39 H 1.08997 * 109.46985 * 293.52374 * 6 3 2 40 40 H 1.08997 * 109.48933 * 63.22239 * 12 11 10 41 41 H 1.09003 * 109.48909 * 303.15400 * 12 11 10 42 42 H 1.09004 * 109.48729 * 181.63158 * 13 12 11 43 43 H 1.08998 * 109.49248 * 61.56417 * 13 12 11 44 44 H 1.09004 * 109.46843 * 289.99980 * 15 14 13 45 45 H 1.08995 * 109.47475 * 49.99837 * 15 14 13 46 46 H 0.96996 * 120.00438 * 180.02562 * 19 18 16 47 47 H 1.08997 * 109.48933 * 60.64790 * 24 14 13 48 48 H 1.09003 * 109.48909 * 180.71630 * 24 14 13 49 49 H 1.09004 * 109.48998 * 296.78007 * 25 11 10 50 50 H 1.09001 * 109.48514 * 56.82163 * 25 11 10 51 51 H 1.08997 * 109.47730 * 217.50228 * 27 26 10 52 52 H 1.08997 * 109.46984 * 337.50371 * 27 26 10 53 53 H 1.09006 * 109.46788 * 55.09025 * 28 27 26 54 54 H 1.09001 * 109.47173 * 175.08828 * 28 27 26 55 55 H 1.09000 * 109.47632 * 295.09238 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.0693 2.4680 -0.0006 5 6 2.9432 1.3862 -1.2492 6 6 2.9431 1.3863 1.2493 7 6 3.8139 2.6137 1.1717 8 7 3.4711 3.8259 1.5044 9 7 4.4570 4.6294 1.3190 10 6 5.4872 3.9689 0.8453 11 7 6.7256 4.4981 0.5190 12 6 6.5883 5.6188 -0.4217 13 6 7.9783 6.1223 -0.8176 14 7 8.7080 6.5374 0.3886 15 6 10.0209 7.0984 0.0428 16 6 10.6336 7.7332 1.2646 17 1 10.1008 7.7214 2.2039 18 6 11.8743 8.3289 1.1832 19 7 12.5230 8.3436 0.0392 20 14 12.6334 9.1163 2.6975 21 1 11.7085 8.9667 3.8496 22 1 13.9231 8.4490 3.0087 23 1 12.8725 10.5588 2.4382 24 6 8.8454 5.4167 1.3293 25 6 7.4553 4.9132 1.7252 26 7 5.1104 2.6617 0.7400 27 6 5.9259 1.5418 0.2636 28 6 6.5183 0.7966 1.4614 29 1 -0.5399 -0.9354 -0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.6137 3.4115 -0.0403 33 1 0.4172 2.3880 -0.8704 34 1 0.4686 2.4330 0.9082 35 1 3.6515 0.5576 -1.2492 36 1 2.3166 1.3284 -2.1392 37 1 3.4885 2.3299 -1.2490 38 1 3.5719 0.4979 1.3092 39 1 2.3111 1.4445 2.1354 40 1 6.0307 6.4260 0.0532 41 1 6.0560 5.2833 -1.3118 42 1 7.8786 6.9722 -1.4928 43 1 8.5261 5.3231 -1.3169 44 1 10.6722 6.3026 -0.3185 45 1 9.9006 7.8512 -0.7361 46 1 13.3960 8.7624 -0.0180 47 1 9.4029 4.6095 0.8544 48 1 9.3777 5.7522 2.2194 49 1 6.9076 5.7125 2.2246 50 1 7.5547 4.0634 2.4005 51 1 5.3039 0.8604 -0.3169 52 1 6.7327 1.9208 -0.3636 53 1 5.7157 0.4932 2.1337 54 1 7.0527 -0.0867 1.1116 55 1 7.2085 1.4523 1.9922 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001356267674.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:42 Heat of formation + Delta-G solvation = 93.068901 kcal Electronic energy + Delta-G solvation = -31934.991148 eV Core-core repulsion = 28008.305984 eV Total energy + Delta-G solvation = -3926.685164 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.238 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -44.11219 -40.32165 -39.09404 -36.88899 -36.55074 -34.59329 -32.92185 -32.06405 -31.52602 -30.98229 -29.63528 -28.31193 -28.00794 -26.73429 -24.94613 -24.66272 -23.83408 -23.51405 -22.33315 -21.28855 -20.56274 -19.05502 -18.52083 -18.39871 -17.66995 -17.33807 -16.67122 -16.54809 -16.05105 -15.93590 -15.71213 -15.54467 -15.41675 -15.18781 -14.99390 -14.79977 -14.45262 -14.14331 -14.01191 -13.88170 -13.52346 -13.26299 -13.15741 -13.14580 -12.81590 -12.74822 -12.63086 -12.61560 -12.45440 -12.35242 -12.28638 -12.26509 -12.17662 -12.10902 -11.77960 -11.67114 -11.54260 -11.41326 -11.23319 -11.05241 -10.62140 -10.34518 -10.03524 -9.83423 -9.06176 -8.20681 -6.30228 0.66684 1.20519 1.40620 1.42143 1.48122 1.55180 1.78287 2.40149 2.62455 3.11300 3.20451 3.28191 3.61657 3.72282 3.74975 3.89724 3.98824 4.02234 4.03701 4.16029 4.17163 4.25267 4.26459 4.31659 4.32493 4.44351 4.46751 4.55185 4.61625 4.68026 4.69139 4.71643 4.81012 4.83113 4.88104 4.93753 4.94433 4.97567 5.00751 5.04865 5.13364 5.16679 5.19247 5.20268 5.24509 5.29924 5.44261 5.54468 5.60944 5.65556 5.81603 5.98529 6.03714 6.20704 6.30302 6.58020 6.85337 7.39388 7.70635 8.90455 Molecular weight = 347.24amu Principal moments of inertia in cm(-1) A = 0.026074 B = 0.002134 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.604455 B =13116.841749 C =13230.405347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.146 4.146 3 C -0.026 4.026 4 C -0.142 4.142 5 C -0.138 4.138 6 C -0.017 4.017 7 C 0.202 3.798 8 N -0.322 5.322 9 N -0.348 5.348 10 C 0.342 3.658 11 N -0.458 5.458 12 C 0.087 3.913 13 C 0.061 3.939 14 N -0.548 5.548 15 C 0.210 3.790 16 C -0.522 4.522 17 H 0.061 0.939 18 C 0.003 3.997 19 N -0.932 5.932 20 Si 0.967 3.033 21 H -0.265 1.265 22 H -0.277 1.277 23 H -0.280 1.280 24 C 0.076 3.924 25 C 0.085 3.915 26 N -0.454 5.454 27 C 0.096 3.904 28 C -0.163 4.163 29 H 0.109 0.891 30 H 0.099 0.901 31 H 0.129 0.871 32 H 0.037 0.963 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.077 0.923 36 H 0.062 0.938 37 H 0.030 0.970 38 H 0.112 0.888 39 H 0.102 0.898 40 H 0.043 0.957 41 H 0.090 0.910 42 H 0.080 0.920 43 H 0.036 0.964 44 H -0.032 1.032 45 H 0.007 0.993 46 H 0.264 0.736 47 H 0.031 0.969 48 H 0.077 0.923 49 H 0.039 0.961 50 H 0.089 0.911 51 H 0.121 0.879 52 H 0.099 0.901 53 H 0.067 0.933 54 H 0.104 0.896 55 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.765 -24.254 -1.273 31.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.164 4.164 3 C -0.027 4.027 4 C -0.199 4.199 5 C -0.195 4.195 6 C -0.057 4.057 7 C -0.066 4.066 8 N -0.162 5.162 9 N -0.192 5.192 10 C -0.016 4.016 11 N -0.184 5.184 12 C -0.041 4.041 13 C -0.067 4.067 14 N -0.274 5.274 15 C 0.084 3.916 16 C -0.561 4.561 17 H 0.080 0.920 18 C -0.195 4.195 19 N -0.573 5.573 20 Si 0.792 3.208 21 H -0.189 1.189 22 H -0.203 1.203 23 H -0.206 1.206 24 C -0.052 4.052 25 C -0.042 4.042 26 N -0.146 5.146 27 C -0.025 4.025 28 C -0.221 4.221 29 H 0.128 0.872 30 H 0.117 0.883 31 H 0.147 0.853 32 H 0.056 0.944 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.096 0.904 36 H 0.081 0.919 37 H 0.049 0.951 38 H 0.130 0.870 39 H 0.120 0.880 40 H 0.061 0.939 41 H 0.108 0.892 42 H 0.098 0.902 43 H 0.054 0.946 44 H -0.014 1.014 45 H 0.025 0.975 46 H 0.073 0.927 47 H 0.050 0.950 48 H 0.095 0.905 49 H 0.057 0.943 50 H 0.107 0.893 51 H 0.139 0.861 52 H 0.117 0.883 53 H 0.086 0.914 54 H 0.123 0.877 55 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -21.408 -23.051 -0.868 31.471 hybrid contribution 1.689 0.119 -0.061 1.694 sum -19.719 -22.932 -0.930 30.259 Atomic orbital electron populations 1.24189 0.96345 1.02695 0.99755 1.22821 0.95870 0.96757 1.00906 1.19559 0.94811 0.94428 0.93878 1.21943 0.98769 0.97209 1.02005 1.21915 0.99500 1.01031 0.97083 1.20337 0.95406 0.89885 1.00047 1.25201 0.83585 0.98087 0.99741 1.73951 1.21584 0.99375 1.21287 1.74587 0.98600 1.27149 1.18845 1.22342 0.93205 0.83697 1.02313 1.58975 1.10486 1.33854 1.15057 1.22054 0.96817 0.90273 0.94910 1.22113 0.93169 0.98948 0.92495 1.62182 1.20799 1.30793 1.13587 1.19347 0.83856 0.92602 0.95765 1.21467 1.02086 1.35963 0.96541 0.92042 1.25869 0.97588 0.96763 0.99283 1.70079 1.14773 1.45793 1.26646 0.85360 0.78176 0.77974 0.79256 1.18938 1.20268 1.20572 1.21922 0.94580 0.91354 0.97362 1.22122 0.93379 0.99190 0.89514 1.46588 1.11858 1.08117 1.48038 1.22274 0.95609 0.86061 0.98595 1.22137 1.01575 1.01149 0.97229 0.87230 0.88325 0.85294 0.94362 0.91997 0.91943 0.90385 0.91903 0.95128 0.86957 0.87989 0.93858 0.89175 0.90166 0.94589 1.01401 0.97518 0.92676 0.95033 0.90476 0.94290 0.89294 0.86101 0.88300 0.91394 0.87720 0.93630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.70 13.70 67.78 0.93 -0.77 16 2 C -0.15 -1.23 8.76 25.65 0.22 -1.00 16 3 C -0.03 -0.31 0.77 -52.93 -0.04 -0.35 16 4 C -0.14 -2.32 6.89 71.98 0.50 -1.82 16 5 C -0.14 -1.71 7.46 71.98 0.54 -1.17 16 6 C -0.02 -0.22 4.68 29.85 0.14 -0.08 16 7 C 0.20 4.41 5.29 137.64 0.73 5.14 16 8 N -0.32 -9.86 11.17 -49.54 -0.55 -10.41 16 9 N -0.35 -12.05 12.06 -58.01 -0.70 -12.75 16 10 C 0.34 10.06 6.51 260.12 1.69 11.75 16 11 N -0.46 -13.88 4.66 -705.55 -3.29 -17.17 16 12 C 0.09 2.78 5.46 86.31 0.47 3.25 16 13 C 0.06 2.22 5.61 86.31 0.48 2.71 16 14 N -0.55 -24.01 4.70 -900.30 -4.23 -28.24 16 15 C 0.21 11.17 4.72 85.56 0.40 11.58 16 16 C -0.52 -29.57 8.47 25.60 0.22 -29.35 16 17 H 0.06 3.44 7.13 -2.91 -0.02 3.42 16 18 C 0.00 0.18 5.46 84.65 0.46 0.64 16 19 N -0.93 -55.81 13.29 21.45 0.28 -55.52 16 20 Si 0.97 44.43 29.54 68.60 2.03 46.46 16 21 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 22 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 23 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 24 C 0.08 2.95 5.43 86.31 0.47 3.42 16 25 C 0.09 2.81 5.55 86.31 0.48 3.29 16 26 N -0.45 -9.77 2.50 -514.87 -1.29 -11.06 16 27 C 0.10 1.29 6.41 86.38 0.55 1.85 16 28 C -0.16 -1.82 10.24 71.98 0.74 -1.08 16 29 H 0.11 0.68 8.06 -2.91 -0.02 0.66 16 30 H 0.10 0.99 5.69 -2.91 -0.02 0.97 16 31 H 0.13 0.61 8.06 -2.91 -0.02 0.59 16 32 H 0.04 0.87 6.74 -2.39 -0.02 0.85 16 33 H 0.06 0.90 7.36 -2.39 -0.02 0.88 16 34 H 0.06 0.98 7.63 -2.39 -0.02 0.96 16 35 H 0.08 0.61 6.66 -2.38 -0.02 0.59 16 36 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.03 0.54 6.80 -2.39 -0.02 0.53 16 38 H 0.11 0.81 7.42 -2.38 -0.02 0.79 16 39 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.04 1.56 8.10 -2.39 -0.02 1.54 16 41 H 0.09 2.53 8.13 -2.39 -0.02 2.51 16 42 H 0.08 2.87 8.07 -2.38 -0.02 2.85 16 43 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 44 H -0.03 -1.81 8.12 -2.39 -0.02 -1.82 16 45 H 0.01 0.38 8.03 -2.39 -0.02 0.37 16 46 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 47 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 48 H 0.08 3.22 6.79 -2.39 -0.02 3.20 16 49 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 50 H 0.09 2.57 8.13 -2.39 -0.02 2.55 16 51 H 0.12 0.93 5.90 -2.39 -0.01 0.92 16 52 H 0.10 1.54 8.07 -2.39 -0.02 1.52 16 53 H 0.07 0.68 7.75 -2.38 -0.02 0.66 16 54 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 55 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 Total: -1.00 -71.48 424.55 2.08 -69.40 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: 0.84 Total: 11.30 kcal Atomic # 6 Polarization: -0.99 SS G_CDS: 8.98 Total: 7.99 kcal Atomic # 7 Polarization: -125.37 SS G_CDS: -9.78 Total: -135.15 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -71.48 2.08 -69.40 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356267674.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.469 kcal (2) G-P(sol) polarization free energy of solvation -71.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds