Wall clock time and date at job start Wed Apr 1 2020 05:35:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99682 * 2 1 4 4 H 1.48502 * 109.47039 * 274.56582 * 3 2 1 5 5 H 1.48503 * 109.47063 * 34.56602 * 3 2 1 6 6 H 1.48499 * 109.47042 * 154.56732 * 3 2 1 7 7 C 1.37877 * 120.00033 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00231 * 354.03138 * 7 2 1 9 9 C 1.50699 * 119.99860 * 174.03111 * 7 2 1 10 10 C 1.52998 * 115.55149 * 93.64978 * 9 7 2 11 11 N 1.46504 * 109.47086 * 65.20123 * 10 9 7 12 12 C 1.34773 * 120.00209 * 185.23237 * 11 10 9 13 13 O 1.21639 * 119.99944 * 4.82467 * 12 11 10 14 14 C 1.47207 * 120.00216 * 184.82607 * 12 11 10 15 15 C 1.47089 * 127.20499 * 4.92789 * 14 12 11 16 16 C 1.34114 * 105.97153 * 179.87114 * 15 14 12 17 17 S 1.76199 * 125.41012 * 180.13849 * 16 15 14 18 18 N 1.65597 * 107.22095 * 90.33445 * 17 16 15 19 19 O 1.42101 * 106.40203 * 203.87483 * 17 16 15 20 20 O 1.42099 * 106.40124 * 336.79163 * 17 16 15 21 21 O 1.34288 * 109.18139 * 0.40023 * 16 15 14 22 22 C 1.33685 * 110.91334 * 359.73603 * 21 16 15 23 23 Cl 1.73601 * 125.82715 * 179.97438 * 22 21 16 24 24 C 1.52998 * 117.50278 * 239.32224 * 9 7 2 25 25 C 1.53004 * 117.49996 * 307.98438 * 9 7 2 26 26 H 0.97000 * 120.00580 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.47717 * 185.20561 * 10 9 7 28 28 H 1.09008 * 109.47216 * 305.20770 * 10 9 7 29 29 H 0.97003 * 119.99866 * 5.23918 * 11 10 9 30 30 H 1.07997 * 127.01012 * 0.02562 * 15 14 12 31 31 H 0.97000 * 120.00004 * 359.97438 * 18 17 16 32 32 H 0.97001 * 120.00638 * 180.02562 * 18 17 16 33 33 H 1.09000 * 117.49973 * 215.00671 * 24 9 7 34 34 H 1.09008 * 117.49252 * 0.02562 * 24 9 7 35 35 H 1.09001 * 117.49881 * 359.97066 * 25 9 7 36 36 H 1.08999 * 117.50269 * 144.97403 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4000 2.1022 -1.3957 5 1 1.4980 2.6229 0.7944 6 1 3.5915 1.4143 0.6013 7 6 2.0045 -1.1940 -0.0005 8 1 1.4690 -2.1269 0.0963 9 6 3.5054 -1.1975 -0.1363 10 6 4.2869 -1.2157 1.1790 11 7 4.0341 -2.4772 1.8798 12 6 4.5354 -2.6740 3.1152 13 8 5.1228 -1.7732 3.6838 14 6 4.3724 -3.9790 3.7765 15 6 3.7846 -5.1993 3.2031 16 6 3.8515 -6.1293 4.1671 17 16 3.2882 -7.7925 4.0221 18 7 4.5616 -8.6950 3.4687 19 8 3.0217 -8.2426 5.3433 20 8 2.3136 -7.7973 2.9880 21 8 4.4109 -5.5900 5.2623 22 6 4.7298 -4.3087 5.0536 23 17 5.4709 -3.2449 6.2081 24 6 4.1056 -1.9507 -1.3250 25 6 4.1107 -0.4201 -1.3068 26 1 -0.4851 0.8400 0.0004 27 1 5.3526 -1.1236 0.9698 28 1 3.9659 -0.3823 1.8040 29 1 3.5058 -3.1708 1.4546 30 1 3.3835 -5.3221 2.2079 31 1 5.4159 -8.2709 3.2916 32 1 4.4532 -9.6475 3.3208 33 1 5.0571 -2.4594 -1.1701 34 1 3.4147 -2.4435 -2.0093 35 1 3.4233 0.0934 -1.9791 36 1 5.0654 0.0786 -1.1399 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363105635.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:35:04 Heat of formation + Delta-G solvation = -90.455107 kcal Electronic energy + Delta-G solvation = -25792.552595 eV Core-core repulsion = 21624.885463 eV Total energy + Delta-G solvation = -4167.667132 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.042 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.09747 -40.64523 -38.75178 -38.45800 -38.41010 -37.16682 -35.25581 -34.43960 -34.16418 -34.13656 -31.46389 -28.67045 -27.35776 -24.74391 -23.70905 -23.34803 -21.96993 -21.24112 -20.49712 -20.03341 -18.74171 -18.46880 -18.37101 -17.80542 -17.71141 -16.99378 -16.83671 -16.73893 -16.56430 -16.06491 -15.51070 -15.02110 -14.88082 -14.74967 -14.47337 -14.23387 -13.79172 -13.53867 -13.45768 -13.37152 -13.30945 -13.24804 -13.09392 -12.68356 -12.50018 -12.16721 -11.94174 -11.63174 -11.53484 -11.43978 -11.29992 -10.93686 -10.65887 -10.51329 -10.35541 -9.94444 -8.29433 -6.35133 -1.06046 -0.53946 -0.35354 0.09152 1.33575 1.40957 1.50500 1.71514 1.94842 2.06664 2.22264 2.36725 2.44335 3.05540 3.15843 3.24663 3.38724 3.65749 3.69342 4.02196 4.09910 4.38799 4.42300 4.50665 4.51315 4.80948 4.89212 5.02388 5.12767 5.24211 5.31676 5.43874 5.53133 5.71127 6.28523 6.30262 6.52912 6.73996 7.10965 7.35233 8.85366 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.012486 B = 0.003322 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2241.970761 B = 8425.750412 C = 9560.942768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.024 3.976 3 Si 0.930 3.070 4 H -0.268 1.268 5 H -0.307 1.307 6 H -0.238 1.238 7 C -0.480 4.480 8 H 0.046 0.954 9 C -0.042 4.042 10 C 0.165 3.835 11 N -0.689 5.689 12 C 0.577 3.423 13 O -0.564 6.564 14 C -0.232 4.232 15 C -0.035 4.035 16 C -0.559 4.559 17 S 2.769 3.231 18 N -1.223 6.223 19 O -0.972 6.972 20 O -0.956 6.956 21 O -0.113 6.113 22 C 0.133 3.867 23 Cl 0.082 6.918 24 C -0.150 4.150 25 C -0.193 4.193 26 H 0.263 0.737 27 H 0.068 0.932 28 H 0.041 0.959 29 H 0.412 0.588 30 H 0.213 0.787 31 H 0.433 0.567 32 H 0.437 0.563 33 H 0.109 0.891 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.938 -17.067 6.426 23.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.174 4.174 3 Si 0.756 3.244 4 H -0.194 1.194 5 H -0.235 1.235 6 H -0.161 1.161 7 C -0.518 4.518 8 H 0.064 0.936 9 C -0.044 4.044 10 C 0.042 3.958 11 N -0.338 5.338 12 C 0.364 3.636 13 O -0.445 6.445 14 C -0.238 4.238 15 C -0.056 4.056 16 C -0.685 4.685 17 S 2.847 3.153 18 N -0.908 5.908 19 O -0.961 6.961 20 O -0.945 6.945 21 O -0.008 6.008 22 C 0.049 3.951 23 Cl 0.111 6.889 24 C -0.187 4.187 25 C -0.231 4.231 26 H 0.072 0.928 27 H 0.087 0.913 28 H 0.059 0.941 29 H 0.248 0.752 30 H 0.230 0.770 31 H 0.264 0.736 32 H 0.273 0.727 33 H 0.127 0.873 34 H 0.103 0.897 35 H 0.094 0.906 36 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 14.334 -16.516 7.434 23.098 hybrid contribution 0.141 1.513 -0.263 1.542 sum 14.475 -15.003 7.170 22.046 Atomic orbital electron populations 1.70029 1.08198 1.27851 1.52366 1.25740 0.95066 1.02541 0.94024 0.86022 0.80374 0.79459 0.78522 1.19357 1.23456 1.16090 1.20385 0.89084 0.93035 1.49247 0.93564 1.19458 0.93118 1.04602 0.87181 1.20983 0.97734 0.84796 0.92328 1.45607 1.52824 1.19527 1.15858 1.17176 0.79288 0.85713 0.81444 1.90802 1.44682 1.44056 1.64984 1.21314 1.11340 0.96822 0.94370 1.23486 0.92204 0.88579 1.01336 1.35631 1.19024 1.23041 0.90762 1.00261 0.72097 0.69747 0.73212 1.52499 1.29019 1.22331 1.86981 1.93604 1.83563 1.78471 1.40489 1.93689 1.57346 1.84792 1.58663 1.83897 1.60382 1.20874 1.35653 1.23416 0.96231 0.83863 0.91557 1.98518 1.77699 1.55502 1.57175 1.22936 1.01839 0.92825 1.01091 1.22996 1.01835 0.95765 1.02462 0.92754 0.91346 0.94060 0.75212 0.76979 0.73628 0.72707 0.87260 0.89684 0.90649 0.87963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.10 13.96 21.45 0.30 -56.80 16 2 C 0.02 1.34 5.46 84.65 0.46 1.80 16 3 Si 0.93 43.32 24.73 68.60 1.70 45.02 16 4 H -0.27 -11.90 7.10 99.48 0.71 -11.20 16 5 H -0.31 -14.83 7.11 99.48 0.71 -14.12 16 6 H -0.24 -10.21 5.96 99.48 0.59 -9.62 16 7 C -0.48 -24.68 9.33 25.60 0.24 -24.44 16 8 H 0.05 2.62 8.06 -2.91 -0.02 2.59 16 9 C -0.04 -1.70 0.83 -52.93 -0.04 -1.74 16 10 C 0.17 6.21 5.23 86.38 0.45 6.66 16 11 N -0.69 -23.10 5.45 -466.56 -2.54 -25.65 16 12 C 0.58 19.42 7.80 86.60 0.68 20.09 16 13 O -0.56 -22.02 15.65 -4.15 -0.07 -22.09 16 14 C -0.23 -6.37 6.31 -18.97 -0.12 -6.49 16 15 C -0.04 -0.73 10.28 23.65 0.24 -0.49 16 16 C -0.56 -10.71 7.29 66.88 0.49 -10.23 16 17 S 2.77 42.16 6.43 -56.49 -0.36 41.80 16 18 N -1.22 -6.61 9.55 37.02 0.35 -6.25 16 19 O -0.97 -21.78 18.02 -127.90 -2.30 -24.08 16 20 O -0.96 -20.09 17.81 -128.00 -2.28 -22.37 16 21 O -0.11 -2.56 10.53 3.47 0.04 -2.53 16 22 C 0.13 3.45 7.99 67.45 0.54 3.99 16 23 Cl 0.08 2.04 27.93 -2.72 -0.08 1.97 16 24 C -0.15 -4.87 9.96 30.62 0.30 -4.56 16 25 C -0.19 -6.96 7.41 30.62 0.23 -6.74 16 26 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 27 H 0.07 2.29 8.09 -2.39 -0.02 2.27 16 28 H 0.04 1.79 7.17 -2.38 -0.02 1.78 16 29 H 0.41 12.40 7.68 -92.71 -0.71 11.69 16 30 H 0.21 3.26 7.78 -2.91 -0.02 3.24 16 31 H 0.43 0.41 8.92 -96.75 -0.86 -0.46 16 32 H 0.44 0.63 8.96 -96.74 -0.87 -0.23 16 33 H 0.11 2.82 8.14 -2.39 -0.02 2.80 16 34 H 0.08 2.87 8.14 -2.38 -0.02 2.85 16 35 H 0.08 2.98 6.84 -2.39 -0.02 2.96 16 36 H 0.10 3.17 8.14 -2.39 -0.02 3.15 16 Total: -1.00 -77.87 344.35 -3.14 -81.01 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -1.36 Total: 12.10 kcal Atomic # 6 Polarization: -25.60 SS G_CDS: 3.47 Total: -22.14 kcal Atomic # 7 Polarization: -86.81 SS G_CDS: -1.89 Total: -88.70 kcal Atomic # 8 Polarization: -66.45 SS G_CDS: -4.61 Total: -71.06 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 1.70 Total: 45.02 kcal Atomic # 16 Polarization: 42.16 SS G_CDS: -0.36 Total: 41.80 kcal Atomic # 17 Polarization: 2.04 SS G_CDS: -0.08 Total: 1.97 kcal Total: -77.87 -3.14 -81.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363105635.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.442 kcal (2) G-P(sol) polarization free energy of solvation -77.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds