Wall clock time and date at job start Wed Apr 1 2020 04:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.46965 * 2 1 4 4 C 1.50698 * 109.47142 * 119.99701 * 2 1 3 5 5 H 1.08006 * 119.99962 * 119.99980 * 4 2 1 6 6 C 1.37878 * 120.00558 * 300.00036 * 4 2 1 7 7 N 1.31513 * 119.99197 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00544 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46954 * 59.99940 * 8 6 4 10 10 H 1.48497 * 109.47100 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47011 * 300.00450 * 8 6 4 12 12 N 1.46903 * 109.47274 * 239.99926 * 2 1 3 13 13 C 1.46900 * 111.00263 * 183.95539 * 12 2 1 14 14 C 1.38580 * 110.99741 * 59.99683 * 12 2 1 15 15 N 1.31211 * 126.47138 * 58.64033 * 14 12 2 16 16 N 1.28532 * 109.86004 * 180.25483 * 15 14 12 17 17 C 1.30294 * 110.04994 * 359.73836 * 16 15 14 18 18 C 1.50701 * 126.34653 * 179.97438 * 17 16 15 19 19 C 1.52999 * 109.47207 * 270.04615 * 18 17 16 20 20 C 1.52998 * 117.50057 * 243.74554 * 19 18 17 21 21 C 1.53003 * 117.49974 * 175.08380 * 19 18 17 22 22 N 1.36449 * 126.47295 * 238.46191 * 14 12 2 23 23 C 1.46500 * 127.13553 * 0.02562 * 22 14 12 24 24 C 1.52998 * 109.47534 * 272.63484 * 23 22 14 25 25 N 1.46900 * 109.47243 * 174.16884 * 24 23 22 26 26 C 1.48564 * 110.99862 * 190.00064 * 25 24 23 27 27 C 1.54373 * 104.69786 * 200.90150 * 26 25 24 28 28 C 1.54564 * 104.91382 * 23.88263 * 27 26 25 29 29 C 1.48557 * 111.00062 * 74.58720 * 25 24 23 30 30 H 1.09002 * 109.47477 * 300.00026 * 1 2 3 31 31 H 1.08995 * 109.47177 * 60.00048 * 1 2 3 32 32 H 1.08994 * 109.47125 * 180.02562 * 1 2 3 33 33 H 0.97007 * 119.99978 * 180.02562 * 7 6 4 34 34 H 1.09002 * 109.46831 * 302.58897 * 13 12 2 35 35 H 1.08999 * 109.47088 * 62.58396 * 13 12 2 36 36 H 1.08993 * 109.47379 * 182.59111 * 13 12 2 37 37 H 1.09004 * 109.46708 * 30.04410 * 18 17 16 38 38 H 1.08993 * 109.47174 * 150.04429 * 18 17 16 39 39 H 1.09004 * 115.55192 * 29.41842 * 19 18 17 40 40 H 1.08997 * 117.49424 * 359.97438 * 20 19 18 41 41 H 1.08991 * 117.49952 * 145.02065 * 20 19 18 42 42 H 1.08995 * 117.50246 * 214.98146 * 21 19 18 43 43 H 1.09007 * 117.49781 * 359.97438 * 21 19 18 44 44 H 1.09007 * 109.47129 * 152.63874 * 23 22 14 45 45 H 1.09000 * 109.47205 * 32.64378 * 23 22 14 46 46 H 1.09005 * 109.46796 * 54.16833 * 24 23 22 47 47 H 1.08997 * 109.47312 * 294.17543 * 24 23 22 48 48 H 1.08992 * 110.41259 * 319.74320 * 26 25 24 49 49 H 1.09003 * 110.40656 * 82.06236 * 26 25 24 50 50 H 1.09004 * 110.32472 * 142.81068 * 27 26 25 51 51 H 1.09006 * 110.32570 * 265.01855 * 27 26 25 52 52 H 1.09001 * 110.30332 * 241.08378 * 28 27 26 53 53 H 1.09005 * 110.32012 * 118.89076 * 28 27 26 54 54 H 1.08999 * 110.41105 * 277.82118 * 29 25 24 55 55 H 1.09005 * 110.41102 * 40.13945 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4828 7 7 0.9436 0.8303 2.6033 8 14 2.3213 -1.1202 4.0080 9 1 3.8064 -1.1208 4.0082 10 1 1.8269 -0.4197 5.2204 11 1 1.8258 -2.5201 4.0078 12 7 2.0197 -0.6925 -1.1994 13 6 3.4851 -0.7946 -1.1870 14 6 1.5752 -0.0641 -2.3519 15 7 1.7971 1.1826 -2.6955 16 7 1.2333 1.4316 -3.8234 17 6 0.6280 0.3657 -4.2652 18 6 -0.1484 0.2479 -5.5514 19 6 -1.6139 0.6064 -5.2972 20 6 -2.6568 -0.4935 -5.5061 21 6 -2.5485 0.6592 -6.5075 22 7 0.8272 -0.6260 -3.3451 23 6 0.3343 -2.0041 -3.4093 24 6 1.3964 -2.8961 -4.0551 25 7 0.9619 -4.2981 -3.9934 26 6 2.0622 -5.2144 -4.3895 27 6 1.3538 -6.5244 -4.7959 28 6 -0.0788 -6.0967 -5.1883 29 6 -0.1115 -4.5668 -4.9847 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 0.7095 1.1620 3.4844 34 1 3.9181 0.2030 -1.1128 35 1 3.8004 -1.3921 -0.3317 36 1 3.8240 -1.2701 -2.1073 37 1 0.2694 0.9302 -6.2918 38 1 -0.0837 -0.7749 -5.9225 39 1 -1.7905 1.3212 -4.4935 40 1 -2.2988 -1.4724 -5.8250 41 1 -3.5195 -0.5021 -4.8401 42 1 -3.3401 1.4084 -6.4999 43 1 -2.1191 0.4389 -7.4849 44 1 -0.5781 -2.0363 -4.0049 45 1 0.1231 -2.3618 -2.4016 46 1 2.3393 -2.7841 -3.5197 47 1 1.5328 -2.6034 -5.0961 48 1 2.6141 -4.8027 -5.2344 49 1 2.7323 -5.3898 -3.5479 50 1 1.8607 -6.9810 -5.6460 51 1 1.3259 -7.2166 -3.9543 52 1 -0.8090 -6.5807 -4.5397 53 1 -0.2752 -6.3441 -6.2316 54 1 -1.0792 -4.2563 -4.5907 55 1 0.0993 -4.0521 -5.9222 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001390910678.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:00 Heat of formation + Delta-G solvation = 101.924102 kcal Electronic energy + Delta-G solvation = -32527.946949 eV Core-core repulsion = 28601.645775 eV Total energy + Delta-G solvation = -3926.301174 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.238 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.99609 -39.88254 -38.94066 -38.35261 -36.44477 -34.92995 -33.25106 -32.40020 -31.28343 -29.84393 -29.17552 -28.55090 -27.34216 -26.12012 -24.65341 -23.56325 -23.21327 -22.48371 -21.94452 -21.62983 -21.10385 -20.99068 -18.52903 -18.13805 -17.49071 -17.08576 -16.99223 -16.68852 -16.39216 -16.34207 -15.63845 -15.58032 -15.19658 -15.06067 -14.88246 -14.58591 -14.22812 -14.15074 -13.93489 -13.71315 -13.43571 -13.11650 -13.07034 -12.94457 -12.85112 -12.69703 -12.59343 -12.48498 -12.33892 -12.31042 -12.24750 -12.20623 -12.09683 -12.05411 -11.92981 -11.57266 -11.32631 -11.28387 -11.12399 -11.03416 -10.88197 -10.57662 -9.93711 -9.53965 -9.51343 -8.14605 -6.29006 0.75298 1.29298 1.45523 1.47577 1.55247 1.81516 2.41566 2.84472 2.85131 3.11551 3.18720 3.38928 3.57119 3.68045 3.74296 3.81309 3.93068 4.03491 4.07144 4.09653 4.15881 4.23466 4.23913 4.35676 4.37203 4.42696 4.59160 4.64156 4.64645 4.70919 4.71979 4.74965 4.78641 4.82307 4.83599 4.87321 4.90326 4.97341 5.01005 5.03264 5.05791 5.11042 5.13657 5.24630 5.26331 5.30661 5.31578 5.35362 5.55967 5.63583 5.85845 5.87397 5.94902 5.99697 6.13650 6.62692 6.81145 7.40134 7.76488 8.92552 Molecular weight = 347.24amu Principal moments of inertia in cm(-1) A = 0.008076 B = 0.003857 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3466.073353 B = 7257.995968 C = 9433.087427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.237 3.763 3 H -0.030 1.030 4 C -0.522 4.522 5 H 0.073 0.927 6 C 0.014 3.986 7 N -0.922 5.922 8 Si 0.969 3.031 9 H -0.268 1.268 10 H -0.287 1.287 11 H -0.266 1.266 12 N -0.463 5.463 13 C 0.058 3.942 14 C 0.366 3.634 15 N -0.364 5.364 16 N -0.331 5.331 17 C 0.186 3.814 18 C 0.013 3.987 19 C -0.173 4.173 20 C -0.174 4.174 21 C -0.154 4.154 22 N -0.459 5.459 23 C 0.123 3.877 24 C 0.051 3.949 25 N -0.521 5.521 26 C 0.031 3.969 27 C -0.121 4.121 28 C -0.121 4.121 29 C 0.024 3.976 30 H 0.066 0.934 31 H -0.004 1.004 32 H 0.039 0.961 33 H 0.263 0.737 34 H 0.014 0.986 35 H 0.089 0.911 36 H 0.068 0.932 37 H 0.111 0.889 38 H 0.109 0.891 39 H 0.074 0.926 40 H 0.115 0.885 41 H 0.090 0.910 42 H 0.097 0.903 43 H 0.117 0.883 44 H 0.116 0.884 45 H 0.088 0.912 46 H 0.061 0.939 47 H 0.053 0.947 48 H 0.048 0.952 49 H 0.073 0.927 50 H 0.083 0.917 51 H 0.069 0.931 52 H 0.071 0.929 53 H 0.085 0.915 54 H 0.085 0.915 55 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.020 -14.556 -22.245 27.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.132 3.868 3 H -0.012 1.012 4 C -0.560 4.560 5 H 0.091 0.909 6 C -0.186 4.186 7 N -0.561 5.561 8 Si 0.794 3.206 9 H -0.193 1.193 10 H -0.213 1.213 11 H -0.191 1.191 12 N -0.190 5.190 13 C -0.090 4.090 14 C 0.008 3.992 15 N -0.207 5.207 16 N -0.170 5.170 17 C -0.082 4.082 18 C -0.027 4.027 19 C -0.193 4.193 20 C -0.211 4.211 21 C -0.191 4.191 22 N -0.152 5.152 23 C 0.001 3.999 24 C -0.078 4.078 25 N -0.245 5.245 26 C -0.097 4.097 27 C -0.159 4.159 28 C -0.159 4.159 29 C -0.104 4.104 30 H 0.085 0.915 31 H 0.015 0.985 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.033 0.967 35 H 0.108 0.892 36 H 0.086 0.914 37 H 0.129 0.871 38 H 0.127 0.873 39 H 0.093 0.907 40 H 0.133 0.867 41 H 0.109 0.891 42 H 0.116 0.884 43 H 0.136 0.864 44 H 0.134 0.866 45 H 0.106 0.894 46 H 0.080 0.920 47 H 0.071 0.929 48 H 0.066 0.934 49 H 0.091 0.909 50 H 0.102 0.898 51 H 0.088 0.912 52 H 0.090 0.910 53 H 0.104 0.896 54 H 0.104 0.896 55 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.943 -13.600 -21.473 25.894 hybrid contribution 0.487 0.108 0.752 0.903 sum -4.455 -13.491 -20.721 25.124 Atomic orbital electron populations 1.21524 0.97558 0.99004 0.98539 1.19052 0.92214 0.90558 0.85017 1.01242 1.21290 1.32042 1.12822 0.89894 0.90877 1.25780 0.95040 0.95569 1.02164 1.70051 1.37477 1.24158 1.24422 0.85443 0.78827 0.78650 0.77723 1.19333 1.21251 1.19099 1.59166 1.12181 1.49677 0.97935 1.22163 0.84108 1.00111 1.02580 1.22679 0.96399 0.88460 0.91619 1.74581 1.23230 1.13655 1.09201 1.73857 1.13028 1.24105 1.06045 1.25394 1.02072 0.84509 0.96263 1.19728 0.90696 1.04821 0.87418 1.22052 0.90777 1.04032 1.02404 1.23207 1.00243 0.94699 1.02905 1.23075 1.00839 1.00893 0.94250 1.46421 1.39858 1.12617 1.16291 1.21797 0.97901 0.75761 1.04452 1.22291 0.97390 0.88898 0.99269 1.65244 1.08875 1.02497 1.47933 1.23140 0.93731 0.93285 0.99538 1.22335 0.95713 0.96090 1.01776 1.22343 0.97021 0.94146 1.02394 1.23333 0.95905 0.97258 0.93877 0.91489 0.98489 0.94228 0.92761 0.96703 0.89201 0.91364 0.87050 0.87267 0.90750 0.86699 0.89135 0.88417 0.86428 0.86633 0.89356 0.92017 0.92862 0.93351 0.90883 0.89820 0.91220 0.91030 0.89620 0.89623 0.92543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.73 8.84 71.98 0.64 -5.10 16 2 C 0.24 12.83 1.99 44.17 0.09 12.92 16 3 H -0.03 -1.91 8.07 -2.39 -0.02 -1.93 16 4 C -0.52 -28.66 7.95 25.60 0.20 -28.45 16 5 H 0.07 3.83 6.40 -2.91 -0.02 3.81 16 6 C 0.01 0.76 5.30 84.66 0.45 1.20 16 7 N -0.92 -54.39 11.32 21.45 0.24 -54.14 16 8 Si 0.97 43.32 29.54 68.60 2.03 45.35 16 9 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 10 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 11 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 12 N -0.46 -21.08 4.66 -711.02 -3.31 -24.39 16 13 C 0.06 2.38 9.14 127.69 1.17 3.55 16 14 C 0.37 15.87 5.03 260.12 1.31 17.18 16 15 N -0.36 -17.56 12.11 -58.01 -0.70 -18.26 16 16 N -0.33 -13.99 12.18 -49.54 -0.60 -14.59 16 17 C 0.19 6.05 7.28 137.64 1.00 7.05 16 18 C 0.01 0.26 5.67 29.85 0.17 0.43 16 19 C -0.17 -3.44 5.72 -10.79 -0.06 -3.50 16 20 C -0.17 -2.49 10.18 30.62 0.31 -2.18 16 21 C -0.15 -2.04 10.26 30.62 0.31 -1.73 16 22 N -0.46 -15.51 2.81 -514.86 -1.45 -16.95 16 23 C 0.12 3.20 5.97 86.38 0.52 3.71 16 24 C 0.05 1.13 5.15 86.30 0.44 1.57 16 25 N -0.52 -10.10 5.34 -881.52 -4.71 -14.80 16 26 C 0.03 0.51 6.45 86.45 0.56 1.07 16 27 C -0.12 -1.51 7.02 31.59 0.22 -1.29 16 28 C -0.12 -1.35 7.01 31.59 0.22 -1.13 16 29 C 0.02 0.32 5.94 86.45 0.51 0.83 16 30 H 0.07 3.88 6.07 -2.39 -0.01 3.87 16 31 H 0.00 -0.21 7.22 -2.39 -0.02 -0.23 16 32 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.26 14.77 8.31 -92.70 -0.77 13.99 16 34 H 0.01 0.64 8.14 -2.39 -0.02 0.63 16 35 H 0.09 3.63 6.33 -2.39 -0.02 3.62 16 36 H 0.07 2.40 8.10 -2.39 -0.02 2.38 16 37 H 0.11 2.04 8.14 -2.38 -0.02 2.02 16 38 H 0.11 1.51 7.57 -2.39 -0.02 1.49 16 39 H 0.07 2.02 8.07 -2.39 -0.02 2.00 16 40 H 0.11 1.16 8.03 -2.39 -0.02 1.14 16 41 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.12 1.08 8.14 -2.38 -0.02 1.06 16 44 H 0.12 2.27 7.31 -2.38 -0.02 2.25 16 45 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 46 H 0.06 1.67 8.08 -2.38 -0.02 1.65 16 47 H 0.05 1.00 7.77 -2.39 -0.02 0.99 16 48 H 0.05 0.74 8.00 -2.39 -0.02 0.73 16 49 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 50 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 51 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 52 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 53 H 0.09 0.67 8.14 -2.38 -0.02 0.65 16 54 H 0.09 1.10 8.01 -2.39 -0.02 1.08 16 55 H 0.06 0.63 7.75 -2.38 -0.02 0.61 16 Total: -1.00 -72.65 432.96 0.41 -72.25 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: 0.84 Total: 19.41 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: 8.06 Total: 6.13 kcal Atomic # 7 Polarization: -132.62 SS G_CDS: -10.53 Total: -143.14 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -72.65 0.41 -72.25 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001390910678.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.173 kcal (2) G-P(sol) polarization free energy of solvation -72.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds