Wall clock time and date at job start Wed Apr 1 2020 04:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47439 * 2 1 4 4 C 1.50705 * 109.47069 * 120.00103 * 2 1 3 5 5 H 1.07999 * 119.99834 * 119.99589 * 4 2 1 6 6 C 1.37875 * 120.00089 * 299.99792 * 4 2 1 7 7 N 1.31511 * 119.99854 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99879 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46869 * 89.99897 * 8 6 4 10 10 H 1.48500 * 109.47046 * 209.99894 * 8 6 4 11 11 H 1.48500 * 109.47199 * 330.00291 * 8 6 4 12 12 N 1.46904 * 109.46870 * 239.99848 * 2 1 3 13 13 C 1.46893 * 110.99928 * 306.04863 * 12 2 1 14 14 C 1.38585 * 110.99563 * 70.00287 * 12 2 1 15 15 N 1.31215 * 126.47346 * 293.33166 * 14 12 2 16 16 N 1.28531 * 109.85804 * 180.26295 * 15 14 12 17 17 C 1.30289 * 110.05398 * 359.73815 * 16 15 14 18 18 C 1.50700 * 126.34989 * 179.97438 * 17 16 15 19 19 C 1.53000 * 117.49561 * 8.78341 * 18 17 16 20 20 C 1.53009 * 117.49414 * 300.12891 * 18 17 16 21 21 N 1.36454 * 126.47031 * 113.15986 * 14 12 2 22 22 C 1.46499 * 127.13854 * 0.02562 * 21 14 12 23 23 C 1.52994 * 109.47241 * 266.17620 * 22 21 14 24 24 N 1.46899 * 109.47251 * 179.97438 * 23 22 21 25 25 C 1.46845 * 111.00430 * 170.00254 * 24 23 22 26 26 C 1.53043 * 109.52543 * 185.84240 * 25 24 23 27 27 C 1.53119 * 109.27355 * 300.81659 * 26 25 24 28 28 C 1.53111 * 109.16153 * 57.65574 * 27 26 25 29 29 C 1.46848 * 111.00064 * 294.21311 * 24 23 22 30 30 H 1.08996 * 109.47280 * 59.99748 * 1 2 3 31 31 H 1.09000 * 109.47439 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.46842 * 299.99913 * 1 2 3 33 33 H 0.97003 * 119.99771 * 179.97438 * 7 6 4 34 34 H 1.09004 * 109.46830 * 191.70558 * 13 12 2 35 35 H 1.08994 * 109.47329 * 311.70671 * 13 12 2 36 36 H 1.08998 * 109.47495 * 71.71131 * 13 12 2 37 37 H 1.08996 * 115.55539 * 154.45987 * 18 17 16 38 38 H 1.09001 * 117.49994 * 0.02562 * 19 18 17 39 39 H 1.09008 * 117.49579 * 145.02402 * 19 18 17 40 40 H 1.09003 * 117.49899 * 214.97433 * 20 18 17 41 41 H 1.08995 * 117.49731 * 359.97438 * 20 18 17 42 42 H 1.08999 * 109.46881 * 146.17418 * 22 21 14 43 43 H 1.09006 * 109.46759 * 26.17867 * 22 21 14 44 44 H 1.08999 * 109.47348 * 60.00084 * 23 22 21 45 45 H 1.08996 * 109.47490 * 299.99877 * 23 22 21 46 46 H 1.08991 * 109.46467 * 65.81822 * 25 24 23 47 47 H 1.09009 * 109.45531 * 305.85161 * 25 24 23 48 48 H 1.09000 * 109.50065 * 180.87602 * 26 25 24 49 49 H 1.09004 * 109.50053 * 60.75666 * 26 25 24 50 50 H 1.09002 * 109.51832 * 177.56139 * 27 26 25 51 51 H 1.08999 * 109.52217 * 297.74716 * 27 26 25 52 52 H 1.09001 * 109.50670 * 62.28601 * 28 27 26 53 53 H 1.09005 * 109.50471 * 182.40215 * 28 27 26 54 54 H 1.09004 * 109.46290 * 294.17309 * 29 24 23 55 55 H 1.08998 * 109.46478 * 54.13842 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2394 2.4828 7 7 0.9428 0.8296 2.6034 8 14 2.3214 -1.1205 4.0079 9 1 3.6297 -0.5461 4.4123 10 1 1.3432 -0.9494 5.1120 11 1 2.4859 -2.5664 3.7119 12 7 2.0196 -0.6926 -1.1995 13 6 1.4342 -2.0354 -1.3078 14 6 1.7680 0.0525 -2.3405 15 7 0.5896 0.3305 -2.8465 16 7 0.7273 1.0373 -3.9111 17 6 1.9908 1.2551 -4.1425 18 6 2.5658 2.0405 -5.2930 19 6 1.5878 2.8177 -6.1765 20 6 2.2574 1.5481 -6.7085 21 7 2.6987 0.6384 -3.1483 22 6 4.1545 0.6076 -2.9874 23 6 4.6085 1.8475 -2.2146 24 7 6.0683 1.8163 -2.0528 25 6 6.5672 3.0941 -1.5289 26 6 8.0974 3.0770 -1.5108 27 6 8.5795 1.9203 -0.6310 28 6 8.0066 0.6065 -1.1696 29 6 6.4791 0.6952 -1.1978 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8901 33 1 0.7082 1.1607 3.4845 34 1 1.9616 -2.6008 -2.0762 35 1 1.5255 -2.5499 -0.3512 36 1 0.3811 -1.9522 -1.5765 37 1 3.5459 2.4834 -5.1167 38 1 0.5287 2.7613 -5.9253 39 1 1.9248 3.7719 -6.5816 40 1 3.0345 1.6676 -7.4635 41 1 1.6390 0.6560 -6.8075 42 1 4.6283 0.5975 -3.9690 43 1 4.4402 -0.2887 -2.4368 44 1 4.1347 1.8576 -1.2331 45 1 4.3228 2.7437 -2.7652 46 1 6.1936 3.2421 -0.5158 47 1 6.2207 3.9079 -2.1661 48 1 8.4671 4.0197 -1.1074 49 1 8.4719 2.9430 -2.5257 50 1 9.6686 1.8777 -0.6499 51 1 8.2378 2.0742 0.3926 52 1 8.3797 0.4336 -2.1791 53 1 8.3115 -0.2159 -0.5225 54 1 6.1059 0.8543 -0.1861 55 1 6.0686 -0.2334 -1.5943 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001401407224.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:06 Heat of formation + Delta-G solvation = 103.062210 kcal Electronic energy + Delta-G solvation = -32747.192384 eV Core-core repulsion = 28820.940563 eV Total energy + Delta-G solvation = -3926.251822 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.238 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -44.00410 -40.06288 -39.15006 -37.88131 -36.66379 -34.87726 -34.21088 -31.82818 -31.29248 -30.21274 -29.76821 -27.36002 -27.07641 -25.82741 -24.89876 -24.03739 -23.44896 -23.14296 -22.82341 -21.05340 -20.92213 -20.61623 -18.53825 -18.13559 -17.62818 -17.14522 -16.86519 -16.62168 -16.35395 -16.12102 -15.56158 -15.46233 -15.34822 -15.32224 -14.79688 -14.63604 -14.36221 -14.29688 -13.98500 -13.51991 -13.43092 -13.26256 -13.12539 -13.05729 -12.90721 -12.76887 -12.66151 -12.45663 -12.36391 -12.29965 -12.15247 -12.13194 -12.11052 -11.85747 -11.61820 -11.59868 -11.39503 -11.35155 -11.27621 -11.02735 -10.88982 -10.57058 -9.83251 -9.51395 -9.49687 -8.17776 -6.31584 0.68737 1.26645 1.40685 1.41870 1.52561 1.75950 2.37442 2.72601 2.97269 3.06418 3.12597 3.34127 3.51886 3.73577 3.85657 3.86671 3.96271 4.00775 4.06595 4.11495 4.18174 4.22952 4.27171 4.37054 4.43569 4.47916 4.55013 4.60736 4.64963 4.68740 4.70161 4.78110 4.82965 4.87856 4.91299 4.96516 4.98917 5.01389 5.04873 5.06492 5.07953 5.11606 5.20167 5.23612 5.26939 5.33023 5.36918 5.48325 5.57737 5.61175 5.78979 5.90635 5.99302 6.02321 6.16786 6.59888 6.78055 7.37567 7.74876 8.89054 Molecular weight = 347.24amu Principal moments of inertia in cm(-1) A = 0.006532 B = 0.005042 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4285.521066 B = 5551.766004 C = 8930.939417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.243 3.757 3 H -0.012 1.012 4 C -0.514 4.514 5 H 0.070 0.930 6 C 0.014 3.986 7 N -0.921 5.921 8 Si 0.965 3.035 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.260 1.260 12 N -0.465 5.465 13 C 0.050 3.950 14 C 0.353 3.647 15 N -0.347 5.347 16 N -0.330 5.330 17 C 0.212 3.788 18 C -0.098 4.098 19 C -0.147 4.147 20 C -0.139 4.139 21 N -0.463 5.463 22 C 0.124 3.876 23 C 0.054 3.946 24 N -0.517 5.517 25 C 0.050 3.950 26 C -0.107 4.107 27 C -0.125 4.125 28 C -0.109 4.109 29 C 0.046 3.954 30 H 0.029 0.971 31 H 0.035 0.965 32 H 0.060 0.940 33 H 0.262 0.738 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.027 0.973 37 H 0.148 0.852 38 H 0.083 0.917 39 H 0.133 0.867 40 H 0.138 0.862 41 H 0.081 0.919 42 H 0.130 0.870 43 H 0.095 0.905 44 H 0.003 0.997 45 H 0.086 0.914 46 H 0.012 0.988 47 H 0.085 0.915 48 H 0.079 0.921 49 H 0.082 0.918 50 H 0.082 0.918 51 H 0.044 0.956 52 H 0.083 0.917 53 H 0.072 0.928 54 H 0.009 0.991 55 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.196 3.000 -15.472 22.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.137 3.863 3 H 0.006 0.994 4 C -0.552 4.552 5 H 0.088 0.912 6 C -0.185 4.185 7 N -0.561 5.561 8 Si 0.790 3.210 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.184 1.184 12 N -0.191 5.191 13 C -0.097 4.097 14 C -0.004 4.004 15 N -0.190 5.190 16 N -0.170 5.170 17 C -0.056 4.056 18 C -0.119 4.119 19 C -0.185 4.185 20 C -0.177 4.177 21 N -0.156 5.156 22 C 0.001 3.999 23 C -0.075 4.075 24 N -0.241 5.241 25 C -0.078 4.078 26 C -0.144 4.144 27 C -0.162 4.162 28 C -0.146 4.146 29 C -0.082 4.082 30 H 0.048 0.952 31 H 0.054 0.946 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.090 0.910 35 H 0.103 0.897 36 H 0.045 0.955 37 H 0.166 0.834 38 H 0.102 0.898 39 H 0.151 0.849 40 H 0.156 0.844 41 H 0.100 0.900 42 H 0.148 0.852 43 H 0.113 0.887 44 H 0.021 0.979 45 H 0.104 0.896 46 H 0.030 0.970 47 H 0.103 0.897 48 H 0.097 0.903 49 H 0.101 0.899 50 H 0.101 0.899 51 H 0.063 0.937 52 H 0.101 0.899 53 H 0.090 0.910 54 H 0.028 0.972 55 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 15.352 2.996 -15.875 22.286 hybrid contribution -0.397 -0.075 2.600 2.632 sum 14.955 2.921 -13.275 20.209 Atomic orbital electron populations 1.22242 0.99395 0.99686 1.00231 1.18958 0.90621 0.91628 0.85066 0.99388 1.21215 1.31344 1.12912 0.89749 0.91237 1.25745 0.95050 0.95670 1.02050 1.70063 1.37440 1.24312 1.24244 0.85441 0.77789 0.79385 0.78368 1.20251 1.21155 1.18440 1.59264 1.59000 1.02949 0.97838 1.22241 0.97085 0.87337 1.03072 1.22817 0.84629 0.98777 0.94204 1.74594 1.21347 1.16248 1.06783 1.73808 1.16020 1.15840 1.11326 1.24466 0.88210 0.99408 0.93480 1.20368 1.01573 1.03645 0.86280 1.23086 0.97907 0.97351 1.00150 1.23138 1.03505 0.98099 0.92944 1.46369 1.09178 1.39713 1.20322 1.21891 0.73896 1.00014 1.04067 1.22187 0.89029 0.98292 0.97999 1.62025 1.08413 1.04266 1.49440 1.22223 0.97267 0.90959 0.97372 1.21547 0.92626 0.98887 1.01374 1.21622 1.01274 0.94853 0.98472 1.21552 0.92474 0.98010 1.02600 1.22246 0.97715 0.94242 0.93979 0.95172 0.94566 0.92159 0.92866 0.90962 0.89652 0.95453 0.83415 0.89791 0.84933 0.84413 0.90023 0.85168 0.88685 0.97856 0.89591 0.96987 0.89653 0.90289 0.89937 0.89915 0.93702 0.89878 0.90968 0.97246 0.90461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -8.43 8.18 71.98 0.59 -7.84 16 2 C 0.24 12.90 2.28 44.17 0.10 13.01 16 3 H -0.01 -0.72 8.05 -2.39 -0.02 -0.74 16 4 C -0.51 -27.81 7.80 25.60 0.20 -27.61 16 5 H 0.07 3.63 7.20 -2.91 -0.02 3.61 16 6 C 0.01 0.76 5.30 84.65 0.45 1.21 16 7 N -0.92 -53.88 11.32 21.45 0.24 -53.64 16 8 Si 0.97 43.01 29.54 68.60 2.03 45.04 16 9 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 10 H -0.29 -12.65 7.11 99.48 0.71 -11.95 16 11 H -0.26 -11.01 7.11 99.48 0.71 -10.31 16 12 N -0.46 -20.89 4.73 -711.00 -3.36 -24.25 16 13 C 0.05 2.02 8.49 127.69 1.08 3.11 16 14 C 0.35 15.28 6.26 260.11 1.63 16.91 16 15 N -0.35 -16.17 9.81 -58.00 -0.57 -16.74 16 16 N -0.33 -13.72 11.79 -49.54 -0.58 -14.30 16 17 C 0.21 7.05 7.59 137.64 1.04 8.09 16 18 C -0.10 -2.10 5.93 -11.54 -0.07 -2.17 16 19 C -0.15 -2.73 10.15 30.62 0.31 -2.42 16 20 C -0.14 -2.30 10.24 30.62 0.31 -1.99 16 21 N -0.46 -16.14 2.81 -514.86 -1.45 -17.59 16 22 C 0.12 3.34 5.92 86.38 0.51 3.85 16 23 C 0.05 1.51 5.28 86.30 0.46 1.97 16 24 N -0.52 -12.03 4.66 -896.37 -4.17 -16.20 16 25 C 0.05 1.06 5.46 86.33 0.47 1.53 16 26 C -0.11 -1.71 6.09 30.65 0.19 -1.53 16 27 C -0.12 -2.13 6.00 30.67 0.18 -1.94 16 28 C -0.11 -2.00 6.09 30.64 0.19 -1.82 16 29 C 0.05 1.14 5.29 86.33 0.46 1.60 16 30 H 0.03 1.62 6.00 -2.39 -0.01 1.61 16 31 H 0.04 1.85 6.59 -2.39 -0.02 1.84 16 32 H 0.06 3.55 6.07 -2.38 -0.01 3.53 16 33 H 0.26 14.60 8.31 -92.71 -0.77 13.82 16 34 H 0.07 2.49 8.14 -2.38 -0.02 2.47 16 35 H 0.08 3.49 6.62 -2.39 -0.02 3.47 16 36 H 0.03 1.15 6.67 -2.39 -0.02 1.14 16 37 H 0.15 2.37 8.14 -2.39 -0.02 2.35 16 38 H 0.08 2.03 7.92 -2.39 -0.02 2.01 16 39 H 0.13 1.62 8.14 -2.38 -0.02 1.60 16 40 H 0.14 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.13 2.60 8.02 -2.39 -0.02 2.58 16 43 H 0.09 2.77 6.42 -2.38 -0.02 2.75 16 44 H 0.00 0.12 8.12 -2.39 -0.02 0.10 16 45 H 0.09 2.19 7.99 -2.39 -0.02 2.18 16 46 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 47 H 0.09 1.61 8.02 -2.38 -0.02 1.59 16 48 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 49 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 50 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 51 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 52 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 53 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 54 H 0.01 0.29 8.14 -2.38 -0.02 0.27 16 55 H 0.08 1.91 6.21 -2.39 -0.01 1.90 16 Total: -1.00 -70.38 422.41 1.09 -69.29 By element: Atomic # 1 Polarization: 23.58 SS G_CDS: 0.86 Total: 24.44 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: 8.11 Total: 3.96 kcal Atomic # 7 Polarization: -132.83 SS G_CDS: -9.89 Total: -142.73 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -70.38 1.09 -69.29 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001401407224.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.350 kcal (2) G-P(sol) polarization free energy of solvation -70.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds