Wall clock time and date at job start Wed Apr 1 2020 04:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.47507 * 2 1 4 4 C 1.50699 * 109.47048 * 119.99962 * 2 1 3 5 5 H 1.08001 * 120.00090 * 119.99551 * 4 2 1 6 6 C 1.37878 * 120.00216 * 299.99947 * 4 2 1 7 7 N 1.31514 * 119.99433 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 120.00407 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47191 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47373 * 119.99847 * 8 6 4 11 11 H 1.48504 * 109.47272 * 239.99965 * 8 6 4 12 12 N 1.46906 * 109.47009 * 239.99571 * 2 1 3 13 13 C 1.46894 * 111.00175 * 306.04918 * 12 2 1 14 14 C 1.38584 * 110.99798 * 70.00298 * 12 2 1 15 15 N 1.31211 * 126.47398 * 348.71409 * 14 12 2 16 16 N 1.28530 * 109.86189 * 179.73671 * 15 14 12 17 17 C 1.30290 * 110.05008 * 359.97438 * 16 15 14 18 18 C 1.50702 * 126.34546 * 180.02562 * 17 16 15 19 19 C 1.53004 * 117.49839 * 8.59621 * 18 17 16 20 20 C 1.53002 * 117.49764 * 299.97471 * 18 17 16 21 21 N 1.36451 * 126.47007 * 168.40014 * 14 12 2 22 22 C 1.46500 * 127.14082 * 0.24117 * 21 14 12 23 23 C 1.53004 * 109.46986 * 95.44356 * 22 21 14 24 24 N 1.46896 * 109.46985 * 185.76190 * 23 22 21 25 25 C 1.48560 * 111.00198 * 285.41763 * 24 23 22 26 26 C 1.54375 * 104.59564 * 200.96064 * 25 24 23 27 27 C 1.54260 * 105.06133 * 23.85441 * 26 25 24 28 28 C 1.48559 * 110.99791 * 170.00427 * 24 23 22 29 29 H 1.08997 * 110.41564 * 40.25746 * 28 24 23 30 30 C 1.53010 * 110.40910 * 277.81630 * 28 24 23 31 31 H 1.09003 * 109.47048 * 60.00472 * 1 2 3 32 32 H 1.09001 * 109.47114 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47103 * 300.00331 * 1 2 3 34 34 H 0.97004 * 119.99863 * 179.97438 * 7 6 4 35 35 H 1.09000 * 109.47339 * 190.91821 * 13 12 2 36 36 H 1.09003 * 109.47183 * 310.91199 * 13 12 2 37 37 H 1.09001 * 109.47332 * 70.91388 * 13 12 2 38 38 H 1.08999 * 115.55173 * 154.30824 * 18 17 16 39 39 H 1.08996 * 117.49570 * 0.02562 * 19 18 17 40 40 H 1.08998 * 117.49415 * 145.01832 * 19 18 17 41 41 H 1.08995 * 117.50350 * 214.97683 * 20 18 17 42 42 H 1.09001 * 117.49943 * 0.02562 * 20 18 17 43 43 H 1.09000 * 109.47391 * 215.44745 * 22 21 14 44 44 H 1.09000 * 109.46772 * 335.44991 * 22 21 14 45 45 H 1.08995 * 109.47111 * 305.76254 * 23 22 21 46 46 H 1.09006 * 109.46521 * 65.76390 * 23 22 21 47 47 H 1.08996 * 110.41403 * 319.74450 * 25 24 23 48 48 H 1.09004 * 110.40692 * 82.18472 * 25 24 23 49 49 H 1.08999 * 110.32625 * 264.95847 * 26 25 24 50 50 H 1.09006 * 110.40706 * 142.79276 * 26 25 24 51 51 H 1.09000 * 110.32672 * 241.10020 * 27 26 25 52 52 H 1.09007 * 110.32338 * 118.89506 * 27 26 25 53 53 H 1.09004 * 109.46690 * 60.00407 * 30 28 24 54 54 H 1.09001 * 109.46801 * 179.97438 * 30 28 24 55 55 H 1.08991 * 109.47329 * 299.99971 * 30 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6531 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4828 7 7 0.9436 0.8302 2.6033 8 14 2.3212 -1.1203 4.0080 9 1 3.1453 -2.2877 3.6039 10 1 3.1465 -0.1874 4.8165 11 1 1.1659 -1.5866 4.8161 12 7 2.0196 -0.6926 -1.1994 13 6 1.4342 -2.0355 -1.3078 14 6 1.7680 0.0524 -2.3406 15 7 1.0019 1.1142 -2.4257 16 7 1.0001 1.5558 -3.6328 17 6 1.7591 0.8084 -4.3830 18 6 2.0200 0.9944 -5.8555 19 6 1.5017 2.2775 -6.5082 20 6 0.8163 0.9407 -6.7985 21 7 2.2749 -0.1763 -3.5866 22 6 3.1840 -1.2528 -3.9879 23 6 2.3738 -2.4177 -4.5603 24 7 3.2696 -3.5491 -4.8345 25 6 4.0880 -3.2982 -6.0487 26 6 4.5402 -4.7004 -6.5097 27 6 3.4924 -5.6711 -5.9270 28 6 2.4953 -4.7737 -5.1630 29 1 1.6436 -4.5264 -5.7967 30 6 2.0257 -5.4676 -3.8827 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8899 34 1 0.7089 1.1615 3.4843 35 1 1.9524 -2.5961 -2.0858 36 1 1.5382 -2.5551 -0.3552 37 1 0.3778 -1.9519 -1.5626 38 1 2.9637 0.5893 -6.2207 39 1 0.9725 2.9872 -5.8724 40 1 2.1047 2.7169 -7.3028 41 1 0.9682 0.5008 -7.7841 42 1 -0.1644 0.7713 -6.3537 43 1 3.8735 -0.8823 -4.7464 44 1 3.7479 -1.5944 -3.1200 45 1 1.6150 -2.7214 -3.8393 46 1 1.8908 -2.1040 -5.4858 47 1 3.4857 -2.8199 -6.8210 48 1 4.9527 -2.6815 -5.8034 49 1 5.5295 -4.9286 -6.1131 50 1 4.5465 -4.7590 -7.5981 51 1 3.9674 -6.3758 -5.2445 52 1 2.9832 -6.2049 -6.7296 53 1 1.3910 -4.7885 -3.3134 54 1 1.4597 -6.3625 -4.1412 55 1 2.8913 -5.7457 -3.2817 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001401431756.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:54 Heat of formation + Delta-G solvation = 112.236144 kcal Electronic energy + Delta-G solvation = -32664.988685 eV Core-core repulsion = 28739.134675 eV Total energy + Delta-G solvation = -3925.854010 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.238 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.98736 -40.21544 -39.20093 -37.90820 -36.60965 -34.79332 -33.28743 -32.29017 -31.15126 -30.35291 -29.17899 -27.31918 -26.99560 -26.46656 -25.02356 -24.37802 -23.36402 -23.09495 -21.81294 -21.24042 -20.96448 -20.75326 -18.50827 -18.08311 -17.44219 -17.12823 -16.96688 -16.71967 -16.41680 -16.06459 -15.85414 -15.44360 -15.36825 -15.24059 -14.80062 -14.51207 -14.43209 -13.90386 -13.54082 -13.45648 -13.34969 -13.22276 -12.97654 -12.91652 -12.81351 -12.74803 -12.55590 -12.49878 -12.40956 -12.28303 -12.15216 -12.07945 -12.00046 -11.94859 -11.81922 -11.64707 -11.52786 -11.33684 -11.32993 -11.08884 -10.90027 -10.52024 -10.32735 -9.54198 -9.04853 -8.12489 -6.27451 0.77972 1.24859 1.43964 1.45136 1.57737 1.83345 2.41299 2.80420 2.95242 3.07101 3.16924 3.37007 3.53612 3.62434 3.66157 3.83820 3.94357 4.01262 4.03370 4.11701 4.11842 4.22282 4.28387 4.35510 4.37277 4.44530 4.47198 4.58654 4.60818 4.70411 4.78074 4.78497 4.78804 4.87195 4.88486 4.93965 4.98067 5.02103 5.07715 5.09970 5.11206 5.14238 5.19023 5.26061 5.30621 5.32559 5.36364 5.43645 5.59604 5.62746 5.84208 5.91249 5.94843 6.08001 6.20987 6.58637 6.82096 7.41350 7.86209 8.94436 Molecular weight = 347.24amu Principal moments of inertia in cm(-1) A = 0.008813 B = 0.003770 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3176.424788 B = 7425.754318 C = 9972.026153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.242 3.758 3 H 0.000 1.000 4 C -0.522 4.522 5 H 0.069 0.931 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.969 3.031 9 H -0.260 1.260 10 H -0.283 1.283 11 H -0.279 1.279 12 N -0.455 5.455 13 C 0.043 3.957 14 C 0.365 3.635 15 N -0.363 5.363 16 N -0.330 5.330 17 C 0.203 3.797 18 C -0.091 4.091 19 C -0.147 4.147 20 C -0.144 4.144 21 N -0.473 5.473 22 C 0.119 3.881 23 C 0.042 3.958 24 N -0.512 5.512 25 C 0.025 3.975 26 C -0.121 4.121 27 C -0.117 4.117 28 C 0.058 3.942 29 H 0.052 0.948 30 C -0.139 4.139 31 H 0.033 0.967 32 H 0.030 0.970 33 H 0.062 0.938 34 H 0.263 0.737 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.020 0.980 38 H 0.150 0.850 39 H 0.081 0.919 40 H 0.134 0.866 41 H 0.137 0.863 42 H 0.076 0.924 43 H 0.116 0.884 44 H 0.096 0.904 45 H 0.064 0.936 46 H 0.053 0.947 47 H 0.055 0.945 48 H 0.086 0.914 49 H 0.072 0.928 50 H 0.083 0.917 51 H 0.072 0.928 52 H 0.081 0.919 53 H 0.039 0.961 54 H 0.072 0.928 55 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.394 -12.796 -25.365 29.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.136 3.864 3 H 0.018 0.982 4 C -0.560 4.560 5 H 0.087 0.913 6 C -0.187 4.187 7 N -0.559 5.559 8 Si 0.794 3.206 9 H -0.184 1.184 10 H -0.209 1.209 11 H -0.205 1.205 12 N -0.179 5.179 13 C -0.104 4.104 14 C 0.008 3.992 15 N -0.206 5.206 16 N -0.168 5.168 17 C -0.065 4.065 18 C -0.112 4.112 19 C -0.185 4.185 20 C -0.182 4.182 21 N -0.168 5.168 22 C -0.004 4.004 23 C -0.087 4.087 24 N -0.237 5.237 25 C -0.102 4.102 26 C -0.159 4.159 27 C -0.155 4.155 28 C -0.050 4.050 29 H 0.070 0.930 30 C -0.196 4.196 31 H 0.052 0.948 32 H 0.049 0.951 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.038 0.962 38 H 0.168 0.832 39 H 0.100 0.900 40 H 0.153 0.847 41 H 0.155 0.845 42 H 0.095 0.905 43 H 0.134 0.866 44 H 0.114 0.886 45 H 0.083 0.917 46 H 0.071 0.929 47 H 0.073 0.927 48 H 0.105 0.895 49 H 0.091 0.909 50 H 0.102 0.898 51 H 0.091 0.909 52 H 0.099 0.901 53 H 0.058 0.942 54 H 0.091 0.909 55 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.230 -11.727 -24.233 27.633 hybrid contribution -0.514 -0.527 0.617 0.960 sum 5.716 -12.254 -23.617 27.214 Atomic orbital electron populations 1.22182 0.99192 0.98884 1.00882 1.18926 0.90917 0.92283 0.84228 0.98203 1.21317 1.31594 1.13026 0.90064 0.91288 1.25785 0.95091 0.95683 1.02143 1.70095 1.37413 1.24138 1.24205 0.85335 0.78068 0.78603 0.78583 1.18401 1.20915 1.20519 1.59157 1.56492 1.03693 0.98513 1.22462 0.96362 0.87573 1.04019 1.23066 0.94095 0.96114 0.85938 1.74727 1.20165 1.13158 1.12582 1.73799 1.20324 1.25070 0.97651 1.24379 0.97609 0.88433 0.96080 1.20312 1.01556 1.07497 0.81808 1.23069 1.02905 0.90385 1.02150 1.23105 0.94649 1.00578 0.99846 1.46198 1.38684 1.24958 1.06992 1.21892 0.90794 0.84901 1.02788 1.22454 0.94960 0.90973 1.00317 1.65265 1.20290 1.02212 1.35950 1.23299 0.97958 0.98530 0.90452 1.22279 0.99296 0.93172 1.01120 1.22351 0.96103 0.97531 0.99507 1.22695 0.95547 0.90349 0.96422 0.93040 1.21747 1.01190 1.00053 0.96650 0.94790 0.95070 0.91952 0.92827 0.89617 0.89582 0.96155 0.83220 0.90003 0.84747 0.84493 0.90521 0.86557 0.88577 0.91719 0.92884 0.92684 0.89517 0.90913 0.89816 0.90899 0.90073 0.94152 0.90909 0.92124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -8.27 8.19 71.98 0.59 -7.68 16 2 C 0.24 13.30 2.01 44.17 0.09 13.39 16 3 H 0.00 0.00 7.93 -2.39 -0.02 -0.02 16 4 C -0.52 -29.11 7.81 25.60 0.20 -28.91 16 5 H 0.07 3.71 7.19 -2.91 -0.02 3.69 16 6 C 0.01 0.68 5.30 84.65 0.45 1.13 16 7 N -0.92 -55.10 11.32 21.45 0.24 -54.85 16 8 Si 0.97 43.92 29.54 68.60 2.03 45.95 16 9 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 10 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 11 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 12 N -0.46 -20.85 4.70 -711.01 -3.34 -24.19 16 13 C 0.04 1.65 8.22 127.69 1.05 2.69 16 14 C 0.37 16.07 6.66 260.11 1.73 17.80 16 15 N -0.36 -17.94 9.34 -58.01 -0.54 -18.48 16 16 N -0.33 -14.20 11.79 -49.54 -0.58 -14.79 16 17 C 0.20 6.70 7.59 137.64 1.04 7.75 16 18 C -0.09 -1.88 6.01 -11.54 -0.07 -1.95 16 19 C -0.15 -2.71 10.15 30.60 0.31 -2.40 16 20 C -0.14 -2.39 10.23 30.60 0.31 -2.07 16 21 N -0.47 -15.83 2.81 -514.85 -1.45 -17.27 16 22 C 0.12 2.84 5.26 86.38 0.45 3.29 16 23 C 0.04 0.86 4.73 86.31 0.41 1.27 16 24 N -0.51 -8.75 5.02 -856.72 -4.30 -13.05 16 25 C 0.02 0.30 5.94 86.45 0.51 0.82 16 26 C -0.12 -1.20 7.00 31.49 0.22 -0.97 16 27 C -0.12 -1.31 6.55 31.49 0.21 -1.11 16 28 C 0.06 0.88 2.87 45.07 0.13 1.01 16 29 H 0.05 0.79 8.00 -2.39 -0.02 0.77 16 30 C -0.14 -2.34 9.36 71.99 0.67 -1.66 16 31 H 0.03 1.84 5.95 -2.39 -0.01 1.83 16 32 H 0.03 1.57 6.58 -2.39 -0.02 1.55 16 33 H 0.06 3.72 6.07 -2.39 -0.01 3.70 16 34 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 35 H 0.09 2.74 4.83 -2.39 -0.01 2.73 16 36 H 0.09 3.46 6.63 -2.39 -0.02 3.44 16 37 H 0.02 0.80 6.86 -2.39 -0.02 0.78 16 38 H 0.15 2.07 7.68 -2.39 -0.02 2.05 16 39 H 0.08 2.02 7.92 -2.39 -0.02 2.00 16 40 H 0.13 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.14 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.12 2.06 7.22 -2.39 -0.02 2.04 16 44 H 0.10 2.65 7.93 -2.39 -0.02 2.63 16 45 H 0.06 1.61 5.13 -2.39 -0.01 1.60 16 46 H 0.05 0.99 7.77 -2.38 -0.02 0.97 16 47 H 0.05 0.57 7.75 -2.39 -0.02 0.55 16 48 H 0.09 0.99 8.01 -2.39 -0.02 0.97 16 49 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 50 H 0.08 0.58 8.14 -2.38 -0.02 0.56 16 51 H 0.07 0.86 7.82 -2.39 -0.02 0.85 16 52 H 0.08 0.70 8.14 -2.38 -0.02 0.68 16 53 H 0.04 0.81 7.28 -2.38 -0.02 0.79 16 54 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 55 H 0.06 1.09 8.09 -2.39 -0.02 1.07 16 Total: -1.00 -74.20 417.66 1.24 -72.96 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: 0.87 Total: 21.32 kcal Atomic # 6 Polarization: -5.91 SS G_CDS: 8.31 Total: 2.40 kcal Atomic # 7 Polarization: -132.66 SS G_CDS: -9.97 Total: -142.63 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -74.20 1.24 -72.96 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001401431756.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.201 kcal (2) G-P(sol) polarization free energy of solvation -74.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds