Wall clock time and date at job start Wed Apr 1 2020 04:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.46810 * 2 1 4 4 C 1.50697 * 109.47408 * 239.99946 * 2 1 3 5 5 H 1.07997 * 120.00175 * 240.00178 * 4 2 1 6 6 C 1.37879 * 120.00197 * 59.99341 * 4 2 1 7 7 N 1.31519 * 119.99524 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00249 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.46955 * 90.00603 * 8 6 4 10 10 H 1.48503 * 109.46848 * 210.00476 * 8 6 4 11 11 H 1.48501 * 109.46725 * 330.00462 * 8 6 4 12 12 N 1.46901 * 109.47156 * 119.99788 * 2 1 3 13 13 C 1.46906 * 111.00105 * 176.04893 * 12 2 1 14 14 C 1.38583 * 110.99993 * 300.00135 * 12 2 1 15 15 N 1.31215 * 126.47169 * 307.71294 * 14 12 2 16 16 N 1.28527 * 109.86174 * 179.97438 * 15 14 12 17 17 C 1.30296 * 110.05202 * 0.02562 * 16 15 14 18 18 C 1.50705 * 126.34996 * 179.97438 * 17 16 15 19 19 C 1.53001 * 117.49729 * 8.64067 * 18 17 16 20 20 C 1.52998 * 59.99966 * 252.51493 * 19 18 17 21 21 N 1.36451 * 126.47388 * 127.71319 * 14 12 2 22 22 C 1.46499 * 127.13456 * 0.02562 * 21 14 12 23 23 C 1.53003 * 109.47185 * 265.79669 * 22 21 14 24 24 N 1.46889 * 109.47324 * 180.02562 * 23 22 21 25 25 C 1.48560 * 111.00176 * 285.41495 * 24 23 22 26 26 C 1.54379 * 104.59922 * 200.95830 * 25 24 23 27 27 C 1.54263 * 105.05911 * 23.85737 * 26 25 24 28 28 C 1.48563 * 111.00010 * 169.99793 * 24 23 22 29 29 H 1.09000 * 110.41126 * 40.26187 * 28 24 23 30 30 C 1.52993 * 110.41193 * 277.81640 * 28 24 23 31 31 H 1.08999 * 109.47255 * 60.00715 * 1 2 3 32 32 H 1.09007 * 109.46887 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47144 * 300.00009 * 1 2 3 34 34 H 0.96999 * 119.99431 * 179.97438 * 7 6 4 35 35 H 1.08997 * 109.47184 * 177.75236 * 13 12 2 36 36 H 1.09006 * 109.46663 * 297.75734 * 13 12 2 37 37 H 1.09002 * 109.46611 * 57.75077 * 13 12 2 38 38 H 1.08998 * 115.55188 * 154.34934 * 18 17 16 39 39 H 1.09007 * 117.49714 * 0.02562 * 19 18 17 40 40 H 1.08994 * 117.49768 * 145.01865 * 19 18 17 41 41 H 1.09005 * 117.49333 * 252.51070 * 20 19 18 42 42 H 1.08996 * 117.50054 * 107.49155 * 20 19 18 43 43 H 1.09000 * 109.47291 * 25.79412 * 22 21 14 44 44 H 1.09005 * 109.47147 * 145.79806 * 22 21 14 45 45 H 1.09000 * 109.46796 * 300.00046 * 23 22 21 46 46 H 1.09000 * 109.47038 * 59.99537 * 23 22 21 47 47 H 1.08997 * 110.41015 * 319.74408 * 25 24 23 48 48 H 1.09008 * 110.41026 * 82.18299 * 25 24 23 49 49 H 1.08991 * 110.32784 * 264.95794 * 26 25 24 50 50 H 1.09001 * 110.40869 * 142.78964 * 26 25 24 51 51 H 1.09001 * 110.32190 * 241.10799 * 27 26 25 52 52 H 1.08993 * 110.32794 * 118.89123 * 27 26 25 53 53 H 1.09005 * 109.47215 * 60.00246 * 30 28 24 54 54 H 1.09001 * 109.47113 * 179.97438 * 30 28 24 55 55 H 1.09003 * 109.47669 * 299.99907 * 30 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9434 0.8301 -2.6034 8 14 2.3214 -1.1205 -4.0079 9 1 1.3428 -2.1618 -4.4118 10 1 2.4866 -0.1414 -5.1123 11 1 3.6294 -1.7584 -3.7121 12 7 2.0196 -0.6925 1.1995 13 6 3.4851 -0.7944 1.1871 14 6 1.5753 -0.0640 2.3519 15 7 1.6968 1.2099 2.6421 16 7 1.1720 1.4481 3.7909 17 6 0.6890 0.3493 4.2979 18 6 -0.0050 0.2090 5.6282 19 6 -0.3468 1.4937 6.3856 20 6 0.7854 0.5917 6.8811 21 7 0.9287 -0.6531 3.3992 22 6 0.5668 -2.0663 3.5332 23 6 -0.8673 -2.2743 3.0419 24 7 -1.2304 -3.6912 3.1767 25 6 -0.5709 -4.5119 2.1287 26 6 -1.4240 -5.7960 2.0459 27 6 -2.8134 -5.3892 2.5786 28 6 -2.6828 -3.8935 2.9385 29 1 -3.0223 -3.2721 2.1099 30 6 -3.4804 -3.5780 4.2054 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8899 34 1 0.7093 1.1616 -3.4844 35 1 3.8236 -1.2755 2.1048 36 1 3.8008 -1.3870 0.3283 37 1 3.9181 0.2035 1.1189 38 1 -0.7034 -0.6240 5.7086 39 1 -0.0700 2.4403 5.9215 40 1 -1.2703 1.5061 6.9644 41 1 0.6066 0.0107 7.7859 42 1 1.8073 0.9449 6.7431 43 1 1.2470 -2.6738 2.9362 44 1 0.6388 -2.3622 4.5798 45 1 -1.5475 -1.6668 3.6389 46 1 -0.9393 -1.9783 1.9953 47 1 -0.5799 -3.9872 1.1734 48 1 0.4511 -4.7528 2.4216 49 1 -0.9929 -6.5779 2.6710 50 1 -1.4993 -6.1363 1.0131 51 1 -3.0642 -5.9713 3.4653 52 1 -3.5703 -5.5281 1.8068 53 1 -3.3092 -2.5408 4.4937 54 1 -4.5424 -3.7308 4.0136 55 1 -3.1578 -4.2371 5.0115 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001401431757.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:58 Heat of formation + Delta-G solvation = 104.161439 kcal Electronic energy + Delta-G solvation = -32845.824519 eV Core-core repulsion = 28919.620363 eV Total energy + Delta-G solvation = -3926.204155 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.238 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -44.01527 -40.21069 -38.98872 -37.87534 -36.53699 -34.91088 -33.28670 -32.30151 -31.49806 -30.60343 -29.12619 -27.57867 -26.49736 -26.19583 -25.16691 -24.34492 -23.39791 -23.18786 -21.86320 -21.33138 -20.99251 -20.75008 -18.55797 -18.04473 -17.73207 -17.19040 -16.79457 -16.63139 -16.49227 -16.03437 -15.75858 -15.52936 -15.44007 -15.14909 -15.01184 -14.50962 -14.25190 -13.92521 -13.80527 -13.48810 -13.39157 -13.11482 -12.97540 -12.93599 -12.81051 -12.71717 -12.63294 -12.47061 -12.35221 -12.27346 -12.24661 -12.16740 -12.12114 -11.97932 -11.83930 -11.66438 -11.61089 -11.38745 -11.36579 -11.12366 -11.03264 -10.61074 -9.85689 -9.65943 -9.52635 -8.17507 -6.32171 0.69009 1.25653 1.42744 1.43528 1.54317 1.76073 2.38357 2.77596 2.96208 3.03434 3.14768 3.34231 3.50968 3.63610 3.70092 3.85582 3.93800 3.99486 4.08187 4.14461 4.15743 4.23723 4.27056 4.32413 4.42655 4.46188 4.55583 4.57573 4.63615 4.66487 4.74974 4.77483 4.79129 4.81550 4.85214 4.88633 4.92624 4.96338 4.98712 5.05400 5.09994 5.10510 5.18809 5.22793 5.28851 5.31824 5.33009 5.36390 5.50904 5.60595 5.78394 5.85456 5.89685 5.94946 6.10119 6.58540 6.78285 7.37115 7.74968 8.89837 Molecular weight = 347.24amu Principal moments of inertia in cm(-1) A = 0.007450 B = 0.004530 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3757.516518 B = 6180.065240 C = 8950.881461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.239 3.761 3 H -0.028 1.028 4 C -0.521 4.521 5 H 0.074 0.926 6 C 0.013 3.987 7 N -0.922 5.922 8 Si 0.969 3.031 9 H -0.274 1.274 10 H -0.287 1.287 11 H -0.261 1.261 12 N -0.464 5.464 13 C 0.054 3.946 14 C 0.364 3.636 15 N -0.362 5.362 16 N -0.329 5.329 17 C 0.211 3.789 18 C -0.097 4.097 19 C -0.147 4.147 20 C -0.139 4.139 21 N -0.462 5.462 22 C 0.126 3.874 23 C 0.044 3.956 24 N -0.491 5.491 25 C 0.024 3.976 26 C -0.120 4.120 27 C -0.114 4.114 28 C 0.049 3.951 29 H 0.031 0.969 30 C -0.129 4.129 31 H 0.065 0.935 32 H 0.032 0.968 33 H -0.005 1.005 34 H 0.263 0.737 35 H 0.071 0.929 36 H 0.092 0.908 37 H 0.014 0.986 38 H 0.148 0.852 39 H 0.082 0.918 40 H 0.134 0.866 41 H 0.139 0.861 42 H 0.080 0.920 43 H 0.094 0.906 44 H 0.127 0.873 45 H 0.081 0.919 46 H 0.016 0.984 47 H 0.024 0.976 48 H 0.088 0.912 49 H 0.086 0.914 50 H 0.070 0.930 51 H 0.089 0.911 52 H 0.072 0.928 53 H 0.048 0.952 54 H 0.070 0.930 55 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.234 -14.084 18.624 24.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.133 3.867 3 H -0.011 1.011 4 C -0.559 4.559 5 H 0.092 0.908 6 C -0.186 4.186 7 N -0.561 5.561 8 Si 0.793 3.207 9 H -0.199 1.199 10 H -0.213 1.213 11 H -0.185 1.185 12 N -0.190 5.190 13 C -0.094 4.094 14 C 0.006 3.994 15 N -0.205 5.205 16 N -0.169 5.169 17 C -0.057 4.057 18 C -0.117 4.117 19 C -0.185 4.185 20 C -0.177 4.177 21 N -0.155 5.155 22 C 0.004 3.996 23 C -0.086 4.086 24 N -0.216 5.216 25 C -0.104 4.104 26 C -0.158 4.158 27 C -0.152 4.152 28 C -0.059 4.059 29 H 0.050 0.950 30 C -0.187 4.187 31 H 0.084 0.916 32 H 0.051 0.949 33 H 0.014 0.986 34 H 0.072 0.928 35 H 0.090 0.910 36 H 0.110 0.890 37 H 0.032 0.968 38 H 0.166 0.834 39 H 0.101 0.899 40 H 0.152 0.848 41 H 0.157 0.843 42 H 0.099 0.901 43 H 0.113 0.887 44 H 0.145 0.855 45 H 0.099 0.901 46 H 0.034 0.966 47 H 0.043 0.957 48 H 0.106 0.894 49 H 0.104 0.896 50 H 0.088 0.912 51 H 0.107 0.893 52 H 0.091 0.909 53 H 0.067 0.933 54 H 0.089 0.911 55 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.949 -13.160 18.850 24.016 hybrid contribution 0.118 0.194 -2.415 2.426 sum -6.831 -12.966 16.434 22.020 Atomic orbital electron populations 1.21491 0.97758 0.98423 0.98427 1.19019 0.92008 0.90707 0.84921 1.01053 1.21309 1.31999 1.12814 0.89812 0.90770 1.25794 0.95060 0.95556 1.02202 1.70063 1.37508 1.24157 1.24362 0.85389 0.79140 0.78011 0.78116 1.19911 1.21294 1.18471 1.59179 1.12160 1.49749 0.97942 1.22228 0.84004 1.00213 1.02921 1.22688 0.98162 0.87861 0.90657 1.74588 1.22451 1.13769 1.09701 1.73806 1.15073 1.23896 1.04103 1.24478 1.02086 0.83757 0.95337 1.20358 1.03865 1.03778 0.83749 1.23073 1.01275 0.93043 1.01117 1.23126 0.96592 1.02387 0.95620 1.46366 1.43342 1.10993 1.14828 1.21810 0.96723 0.75958 1.05121 1.22363 0.95746 0.91397 0.99064 1.65347 1.06204 1.05018 1.45033 1.23234 0.99802 0.94685 0.92694 1.22280 0.95034 0.96639 1.01839 1.22356 0.97155 0.93776 1.01937 1.22784 0.87910 0.97357 0.97814 0.95034 1.21680 0.99211 1.01628 0.96158 0.91592 0.94854 0.98636 0.92772 0.91001 0.88967 0.96759 0.83397 0.89896 0.84845 0.84340 0.90120 0.88749 0.85546 0.90055 0.96610 0.95710 0.89387 0.89573 0.91173 0.89255 0.90889 0.93281 0.91113 0.90826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -5.48 8.84 71.98 0.64 -4.84 16 2 C 0.24 12.86 1.95 44.17 0.09 12.95 16 3 H -0.03 -1.78 7.99 -2.39 -0.02 -1.80 16 4 C -0.52 -28.28 7.95 25.60 0.20 -28.07 16 5 H 0.07 3.82 6.40 -2.91 -0.02 3.81 16 6 C 0.01 0.72 5.30 84.65 0.45 1.17 16 7 N -0.92 -54.19 11.32 21.45 0.24 -53.95 16 8 Si 0.97 42.91 29.54 68.60 2.03 44.94 16 9 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 10 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 11 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 12 N -0.46 -20.95 4.65 -710.99 -3.30 -24.26 16 13 C 0.05 2.18 9.14 127.69 1.17 3.35 16 14 C 0.36 15.88 5.10 260.11 1.33 17.21 16 15 N -0.36 -17.68 11.95 -58.01 -0.69 -18.37 16 16 N -0.33 -14.07 11.79 -49.53 -0.58 -14.65 16 17 C 0.21 7.09 7.59 137.64 1.04 8.14 16 18 C -0.10 -2.09 5.95 -11.54 -0.07 -2.16 16 19 C -0.15 -2.78 10.15 30.59 0.31 -2.47 16 20 C -0.14 -2.35 10.23 30.59 0.31 -2.04 16 21 N -0.46 -15.95 2.81 -514.84 -1.45 -17.40 16 22 C 0.13 3.29 6.10 86.38 0.53 3.82 16 23 C 0.04 1.15 5.10 86.31 0.44 1.59 16 24 N -0.49 -10.57 5.02 -856.72 -4.30 -14.87 16 25 C 0.02 0.53 5.91 86.45 0.51 1.04 16 26 C -0.12 -2.04 7.00 31.49 0.22 -1.82 16 27 C -0.11 -1.78 6.55 31.49 0.21 -1.57 16 28 C 0.05 0.96 2.87 45.06 0.13 1.09 16 29 H 0.03 0.75 8.00 -2.39 -0.02 0.73 16 30 C -0.13 -1.93 9.36 71.98 0.67 -1.26 16 31 H 0.07 3.85 6.07 -2.39 -0.01 3.83 16 32 H 0.03 1.68 7.70 -2.38 -0.02 1.66 16 33 H -0.01 -0.29 7.22 -2.39 -0.02 -0.31 16 34 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 35 H 0.07 2.46 8.10 -2.39 -0.02 2.44 16 36 H 0.09 3.64 6.32 -2.38 -0.02 3.63 16 37 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.15 2.38 8.14 -2.39 -0.02 2.36 16 39 H 0.08 2.05 7.92 -2.38 -0.02 2.03 16 40 H 0.13 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.14 1.36 8.14 -2.38 -0.02 1.34 16 42 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.09 2.62 7.46 -2.39 -0.02 2.60 16 44 H 0.13 2.49 8.04 -2.38 -0.02 2.47 16 45 H 0.08 2.02 7.16 -2.39 -0.02 2.00 16 46 H 0.02 0.54 7.33 -2.39 -0.02 0.53 16 47 H 0.02 0.70 7.75 -2.39 -0.02 0.68 16 48 H 0.09 1.85 7.85 -2.38 -0.02 1.83 16 49 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 50 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 51 H 0.09 1.12 7.82 -2.39 -0.02 1.10 16 52 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 53 H 0.05 0.78 7.28 -2.38 -0.02 0.76 16 54 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 55 H 0.07 0.97 8.09 -2.39 -0.02 0.95 16 Total: -1.00 -71.95 429.58 0.97 -70.98 By element: Atomic # 1 Polarization: 20.60 SS G_CDS: 0.85 Total: 21.45 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: 8.18 Total: 6.13 kcal Atomic # 7 Polarization: -133.42 SS G_CDS: -10.08 Total: -143.50 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -71.95 0.97 -70.98 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001401431757.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.143 kcal (2) G-P(sol) polarization free energy of solvation -71.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds