Wall clock time and date at job start Wed Apr 1 2020 04:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.47391 * 2 1 4 4 N 1.30298 * 126.34417 * 285.23327 * 3 2 1 5 5 N 1.28524 * 110.05125 * 179.97438 * 4 3 2 6 6 C 1.31218 * 109.86009 * 359.74805 * 5 4 3 7 7 N 1.38590 * 126.47130 * 180.25370 * 6 5 4 8 8 C 1.46898 * 110.99960 * 250.66984 * 7 6 5 9 9 C 1.46897 * 111.00034 * 14.62792 * 7 6 5 10 10 H 1.09006 * 109.47297 * 54.99642 * 9 7 6 11 11 C 1.53004 * 109.47262 * 294.99882 * 9 7 6 12 12 C 1.50695 * 109.46980 * 175.00001 * 9 7 6 13 13 H 1.08000 * 120.00127 * 359.97438 * 12 9 7 14 14 C 1.37883 * 119.99962 * 180.02562 * 12 9 7 15 15 N 1.31517 * 119.99973 * 359.97438 * 14 12 9 16 16 Si 1.86801 * 119.99975 * 180.02562 * 14 12 9 17 17 H 1.48499 * 109.47199 * 59.99773 * 16 14 12 18 18 H 1.48505 * 109.46827 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.46883 * 299.99689 * 16 14 12 20 20 N 1.36448 * 107.05620 * 0.40124 * 6 5 4 21 21 C 1.46498 * 127.13883 * 179.87730 * 20 6 5 22 22 C 1.53004 * 109.47028 * 82.31144 * 21 20 6 23 23 H 1.09000 * 110.76397 * 307.40488 * 22 21 20 24 24 C 1.55137 * 110.70450 * 70.60785 * 22 21 20 25 25 C 1.54913 * 101.65240 * 154.03688 * 24 22 21 26 26 N 1.47843 * 104.79411 * 322.92696 * 25 24 22 27 27 C 1.46898 * 111.00075 * 146.36454 * 26 25 24 28 28 C 1.53000 * 117.50019 * 122.90242 * 27 26 25 29 29 C 1.53000 * 117.49964 * 54.24529 * 27 26 25 30 30 C 1.47444 * 108.56635 * 24.09731 * 26 25 24 31 31 H 1.08994 * 109.47584 * 292.86482 * 1 2 3 32 32 H 1.09005 * 109.46760 * 52.86711 * 1 2 3 33 33 H 1.08997 * 109.47320 * 172.86185 * 1 2 3 34 34 H 1.09007 * 109.47319 * 239.99705 * 2 1 3 35 35 H 1.09006 * 109.47112 * 119.99901 * 2 1 3 36 36 H 1.09008 * 109.46568 * 63.64174 * 8 7 6 37 37 H 1.09002 * 109.47151 * 183.63783 * 8 7 6 38 38 H 1.09001 * 109.47536 * 303.64518 * 8 7 6 39 39 H 1.09006 * 109.46964 * 59.99777 * 11 9 7 40 40 H 1.08996 * 109.47402 * 179.97438 * 11 9 7 41 41 H 1.09006 * 109.46769 * 300.00084 * 11 9 7 42 42 H 0.96993 * 120.00030 * 179.97438 * 15 14 12 43 43 H 1.08999 * 109.47234 * 322.31192 * 21 20 6 44 44 H 1.08995 * 109.47216 * 202.31014 * 21 20 6 45 45 H 1.08994 * 110.99308 * 35.94330 * 24 22 21 46 46 H 1.09000 * 111.02352 * 272.13913 * 24 22 21 47 47 H 1.09001 * 110.37353 * 204.09820 * 25 24 22 48 48 H 1.08991 * 110.37476 * 81.75568 * 25 24 22 49 49 H 1.09000 * 115.54822 * 268.57615 * 27 26 25 50 50 H 1.08999 * 117.49570 * 0.02562 * 28 27 26 51 51 H 1.08999 * 117.50254 * 145.01963 * 28 27 26 52 52 H 1.08996 * 117.50001 * 214.98109 * 29 27 26 53 53 H 1.09000 * 117.49724 * 359.97438 * 29 27 26 54 54 H 1.08998 * 109.89195 * 118.41931 * 30 26 25 55 55 H 1.09005 * 109.88923 * 239.60327 * 30 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.0298 2.2407 -1.0126 5 7 2.5299 3.3724 -0.6646 6 6 2.8763 3.3365 0.6005 7 7 3.4440 4.3699 1.3289 8 6 4.8513 4.0844 1.6387 9 6 3.3102 5.6493 0.6196 10 1 2.2604 5.8272 0.3861 11 6 4.1200 5.6005 -0.6776 12 6 3.8265 6.7639 1.4925 13 1 4.2149 6.5440 2.4759 14 6 3.8022 8.0648 1.0360 15 7 3.3288 8.3327 -0.1614 16 14 4.4430 9.4464 2.1177 17 1 5.8733 9.2041 2.4347 18 1 4.3075 10.7398 1.4007 19 1 3.6579 9.4935 3.3773 20 7 2.5749 2.0886 1.0627 21 6 2.7835 1.5731 2.4181 22 6 1.6266 2.0166 3.3160 23 1 1.4830 3.0954 3.2566 24 6 0.3213 1.2678 2.9386 25 6 -0.4596 1.3071 4.2759 26 7 0.5724 1.1377 5.3209 27 6 0.2258 1.8953 6.5308 28 6 0.1170 1.1180 7.8441 29 6 -1.1470 1.6390 7.1558 30 6 1.8695 1.5779 4.7754 31 1 -0.3634 0.3993 0.9468 32 1 -0.3633 0.6204 -0.8193 33 1 -0.3634 -1.0197 -0.1277 34 1 1.8934 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 5.4228 4.0267 0.7122 37 1 5.2542 4.8803 2.2650 38 1 4.9213 3.1344 2.1685 39 1 3.7465 4.7942 -1.3090 40 1 4.0203 6.5497 -1.2041 41 1 5.1698 5.4226 -0.4441 42 1 3.3113 9.2478 -0.4824 43 1 3.7211 1.9626 2.8147 44 1 2.8251 0.4843 2.3904 45 1 0.5326 0.2411 2.6398 46 1 -0.2203 1.7969 2.1545 47 1 -1.1804 0.4905 4.3185 48 1 -0.9641 2.2662 4.3927 49 1 0.6186 2.9110 6.5781 50 1 0.3030 0.0445 7.8104 51 1 0.4379 1.6223 8.7556 52 1 -1.6572 2.4858 7.6146 53 1 -1.7931 0.9085 6.6689 54 1 2.2505 2.4176 5.3565 55 1 2.5817 0.7530 4.8010 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001401439532.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:14 Heat of formation + Delta-G solvation = 114.046162 kcal Electronic energy + Delta-G solvation = -32721.253997 eV Core-core repulsion = 28795.478476 eV Total energy + Delta-G solvation = -3925.775522 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.238 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.93543 -40.43689 -39.07962 -37.62505 -35.71310 -35.13660 -34.29571 -31.69655 -30.79325 -30.43801 -29.95115 -27.30655 -27.27199 -26.39371 -24.91940 -23.68832 -23.35145 -23.03314 -21.82141 -21.31860 -21.13080 -20.78388 -18.45725 -17.97506 -17.59165 -17.26105 -17.14996 -16.59499 -16.41181 -15.98366 -15.54010 -15.23661 -15.17445 -14.97278 -14.91108 -14.55600 -14.39649 -14.15581 -13.60386 -13.48066 -13.31147 -13.20020 -13.12492 -13.07666 -12.94402 -12.71030 -12.66635 -12.57223 -12.44092 -12.30871 -12.20698 -12.07027 -12.03244 -11.98777 -11.74276 -11.63055 -11.36196 -11.30686 -11.06331 -10.87660 -10.81782 -10.49908 -10.36930 -9.32943 -9.05296 -8.13223 -6.28756 0.89479 1.36986 1.43663 1.44867 1.52761 1.95748 2.40121 2.76603 2.94234 3.04508 3.16156 3.41405 3.46988 3.55103 3.71522 3.91724 3.99469 4.01662 4.04498 4.13329 4.20899 4.24549 4.37756 4.38754 4.44407 4.45965 4.52287 4.54806 4.61782 4.65262 4.69407 4.78874 4.80759 4.85660 4.89424 4.92922 4.98391 4.99053 5.02672 5.08062 5.12722 5.14271 5.21007 5.26850 5.31184 5.31707 5.41408 5.48720 5.62713 5.66110 5.87465 5.89258 6.09530 6.12391 6.22469 6.64017 6.81004 7.40263 7.93737 8.93110 Molecular weight = 347.24amu Principal moments of inertia in cm(-1) A = 0.008572 B = 0.003777 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3265.730497 B = 7411.473657 C = 9855.037991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.026 4.026 3 C 0.182 3.818 4 N -0.340 5.340 5 N -0.365 5.365 6 C 0.362 3.638 7 N -0.456 5.456 8 C 0.040 3.960 9 C 0.246 3.754 10 H -0.006 1.006 11 C -0.161 4.161 12 C -0.524 4.524 13 H 0.071 0.929 14 C 0.012 3.988 15 N -0.920 5.920 16 Si 0.968 3.032 17 H -0.264 1.264 18 H -0.288 1.288 19 H -0.270 1.270 20 N -0.470 5.470 21 C 0.119 3.881 22 C -0.119 4.119 23 H 0.051 0.949 24 C -0.119 4.119 25 C 0.049 3.951 26 N -0.496 5.496 27 C -0.021 4.021 28 C -0.151 4.151 29 C -0.174 4.174 30 C 0.062 3.938 31 H 0.065 0.935 32 H 0.037 0.963 33 H 0.095 0.905 34 H 0.103 0.897 35 H 0.112 0.888 36 H 0.023 0.977 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.049 0.951 40 H 0.057 0.943 41 H 0.027 0.973 42 H 0.262 0.738 43 H 0.100 0.900 44 H 0.134 0.866 45 H 0.104 0.896 46 H 0.054 0.946 47 H 0.095 0.905 48 H 0.033 0.967 49 H 0.081 0.919 50 H 0.102 0.898 51 H 0.103 0.897 52 H 0.099 0.901 53 H 0.100 0.900 54 H 0.055 0.945 55 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.520 -22.147 14.274 26.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.066 4.066 3 C -0.087 4.087 4 N -0.178 5.178 5 N -0.208 5.208 6 C 0.004 3.996 7 N -0.179 5.179 8 C -0.107 4.107 9 C 0.140 3.860 10 H 0.012 0.988 11 C -0.221 4.221 12 C -0.562 4.562 13 H 0.089 0.911 14 C -0.187 4.187 15 N -0.559 5.559 16 Si 0.792 3.208 17 H -0.189 1.189 18 H -0.213 1.213 19 H -0.196 1.196 20 N -0.165 5.165 21 C -0.003 4.003 22 C -0.139 4.139 23 H 0.070 0.930 24 C -0.157 4.157 25 C -0.078 4.078 26 N -0.220 5.220 27 C -0.130 4.130 28 C -0.189 4.189 29 C -0.211 4.211 30 C -0.067 4.067 31 H 0.084 0.916 32 H 0.056 0.944 33 H 0.114 0.886 34 H 0.121 0.879 35 H 0.130 0.870 36 H 0.042 0.958 37 H 0.106 0.894 38 H 0.102 0.898 39 H 0.068 0.932 40 H 0.076 0.924 41 H 0.046 0.954 42 H 0.071 0.929 43 H 0.118 0.882 44 H 0.152 0.848 45 H 0.123 0.877 46 H 0.073 0.927 47 H 0.113 0.887 48 H 0.051 0.949 49 H 0.099 0.901 50 H 0.120 0.880 51 H 0.121 0.879 52 H 0.117 0.883 53 H 0.118 0.882 54 H 0.073 0.927 55 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -4.964 -21.933 13.367 26.160 hybrid contribution 0.645 2.215 0.238 2.319 sum -4.319 -19.718 13.605 24.342 Atomic orbital electron populations 1.21955 0.93023 1.03695 1.02435 1.20204 0.97095 0.83483 1.05799 1.25544 1.00580 0.99227 0.83328 1.73842 1.19530 0.98142 1.26308 1.74691 1.20489 1.16203 1.09413 1.23052 1.01410 0.86016 0.89107 1.59240 1.17389 0.99977 1.41330 1.22409 0.85333 1.02578 1.00400 1.18840 0.94231 0.82753 0.90221 0.98828 1.22339 0.97835 1.01768 1.00147 1.21292 1.41886 0.91301 1.01741 0.91140 1.25790 0.95400 1.01203 0.96326 1.70087 1.46618 1.20289 1.18883 0.85467 0.79204 0.77612 0.78473 1.18894 1.21319 1.19556 1.46368 1.47689 1.10012 1.12459 1.22180 0.99693 1.01721 0.76663 1.22636 0.95566 0.99815 0.95898 0.93039 1.22947 0.94632 1.01444 0.96632 1.22988 0.94760 1.00531 0.89541 1.63518 1.02123 1.52345 1.03997 1.22768 1.02418 0.96136 0.91664 1.23094 1.00313 1.00950 0.94507 1.23105 0.90526 1.03803 1.03700 1.22780 0.92323 1.00264 0.91292 0.91640 0.94383 0.88581 0.87891 0.87014 0.95832 0.89388 0.89807 0.93193 0.92393 0.95437 0.92877 0.88200 0.84809 0.87747 0.92741 0.88701 0.94879 0.90134 0.87953 0.87905 0.88274 0.88192 0.92689 0.87829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 9.74 71.98 0.70 -1.82 16 2 C -0.03 -0.47 6.18 29.85 0.18 -0.28 16 3 C 0.18 5.52 7.32 137.64 1.01 6.53 16 4 N -0.34 -14.16 12.18 -49.54 -0.60 -14.76 16 5 N -0.36 -17.49 8.96 -58.00 -0.52 -18.01 16 6 C 0.36 15.13 6.68 260.11 1.74 16.87 16 7 N -0.46 -20.00 4.77 -710.98 -3.39 -23.39 16 8 C 0.04 1.45 8.76 127.69 1.12 2.57 16 9 C 0.25 13.26 2.08 44.17 0.09 13.35 16 10 H -0.01 -0.40 8.11 -2.38 -0.02 -0.42 16 11 C -0.16 -8.77 8.27 71.98 0.60 -8.17 16 12 C -0.52 -28.75 7.93 25.60 0.20 -28.54 16 13 H 0.07 3.67 6.75 -2.91 -0.02 3.65 16 14 C 0.01 0.67 5.30 84.66 0.45 1.12 16 15 N -0.92 -55.03 11.32 21.45 0.24 -54.78 16 16 Si 0.97 43.45 29.54 68.60 2.03 45.47 16 17 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 18 H -0.29 -12.85 7.11 99.48 0.71 -12.15 16 19 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 20 N -0.47 -14.31 2.71 -514.85 -1.40 -15.70 16 21 C 0.12 2.39 5.27 86.38 0.46 2.84 16 22 C -0.12 -2.51 3.17 -9.61 -0.03 -2.54 16 23 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 24 C -0.12 -2.17 5.10 31.98 0.16 -2.01 16 25 C 0.05 0.86 6.02 86.78 0.52 1.38 16 26 N -0.50 -8.63 5.34 -860.37 -4.59 -13.22 16 27 C -0.02 -0.36 5.07 44.92 0.23 -0.13 16 28 C -0.15 -2.08 10.46 30.62 0.32 -1.75 16 29 C -0.17 -2.52 9.83 30.62 0.30 -2.22 16 30 C 0.06 1.06 6.49 86.65 0.56 1.62 16 31 H 0.06 1.07 4.31 -2.39 -0.01 1.06 16 32 H 0.04 0.85 8.13 -2.38 -0.02 0.83 16 33 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.10 1.66 8.14 -2.38 -0.02 1.64 16 35 H 0.11 1.17 6.61 -2.38 -0.02 1.15 16 36 H 0.02 0.91 6.30 -2.38 -0.02 0.90 16 37 H 0.09 3.28 6.52 -2.39 -0.02 3.26 16 38 H 0.08 2.34 5.85 -2.39 -0.01 2.33 16 39 H 0.05 2.73 5.39 -2.38 -0.01 2.71 16 40 H 0.06 3.47 6.07 -2.39 -0.01 3.45 16 41 H 0.03 1.39 6.39 -2.38 -0.02 1.37 16 42 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 43 H 0.10 1.94 5.91 -2.39 -0.01 1.93 16 44 H 0.13 1.60 6.73 -2.39 -0.02 1.58 16 45 H 0.10 1.39 6.56 -2.39 -0.02 1.38 16 46 H 0.05 1.27 7.05 -2.39 -0.02 1.25 16 47 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 48 H 0.03 0.70 7.79 -2.39 -0.02 0.68 16 49 H 0.08 1.60 7.66 -2.39 -0.02 1.58 16 50 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 51 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 52 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 53 H 0.10 1.40 7.95 -2.39 -0.02 1.38 16 54 H 0.05 1.06 7.30 -2.39 -0.02 1.04 16 55 H 0.10 1.34 7.82 -2.38 -0.02 1.32 16 Total: -1.00 -74.63 410.33 1.26 -73.37 By element: Atomic # 1 Polarization: 21.32 SS G_CDS: 0.89 Total: 22.20 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: 8.61 Total: -1.18 kcal Atomic # 7 Polarization: -129.60 SS G_CDS: -10.26 Total: -139.87 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Total: -74.63 1.26 -73.37 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001401439532.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.417 kcal (2) G-P(sol) polarization free energy of solvation -74.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds