Wall clock time and date at job start Wed Apr 1 2020 04:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46894 * 109.47370 * 2 1 4 4 C 1.47847 * 110.99976 * 290.83945 * 3 2 1 5 5 C 1.54907 * 104.79867 * 213.63522 * 4 3 2 6 6 C 1.55146 * 101.65003 * 37.07125 * 5 4 3 7 7 H 1.09001 * 110.69965 * 82.73077 * 6 5 4 8 8 C 1.52999 * 110.85184 * 205.89085 * 6 5 4 9 9 N 1.46499 * 109.47299 * 287.96603 * 8 6 5 10 10 C 1.36737 * 127.13623 * 95.90796 * 9 8 6 11 11 C 1.50703 * 126.34796 * 359.94988 * 10 9 8 12 12 N 1.30297 * 107.30600 * 179.97438 * 10 9 8 13 13 N 1.28523 * 110.05295 * 0.02562 * 12 10 9 14 14 C 1.31224 * 109.86105 * 359.74235 * 13 12 10 15 15 N 1.38578 * 126.47466 * 180.25465 * 14 13 12 16 16 C 1.46898 * 110.99805 * 106.60635 * 15 14 13 17 17 C 1.50696 * 109.47325 * 302.24265 * 16 15 14 18 18 H 1.08007 * 119.99972 * 4.41763 * 17 16 15 19 19 C 1.37876 * 120.00011 * 184.41883 * 17 16 15 20 20 N 1.31515 * 120.00344 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99951 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47138 * 89.99790 * 21 19 17 23 23 H 1.48500 * 109.47440 * 209.99943 * 21 19 17 24 24 H 1.48501 * 109.47043 * 329.99583 * 21 19 17 25 25 C 1.46902 * 110.99960 * 342.65583 * 15 14 13 26 26 C 1.53011 * 109.47023 * 195.11032 * 25 15 14 27 27 C 1.52998 * 117.49410 * 243.28621 * 26 25 15 28 28 C 1.52991 * 117.49740 * 174.66585 * 26 25 15 29 29 C 1.47440 * 111.00018 * 170.00011 * 3 2 1 30 30 H 1.08996 * 109.46921 * 299.99982 * 1 2 3 31 31 H 1.09001 * 109.47098 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46656 * 60.00277 * 1 2 3 33 33 H 1.09000 * 109.47146 * 120.00292 * 2 1 3 34 34 H 1.09006 * 109.47098 * 239.99230 * 2 1 3 35 35 H 1.09000 * 110.37428 * 332.47221 * 4 3 2 36 36 H 1.09006 * 110.37171 * 94.80329 * 4 3 2 37 37 H 1.08994 * 110.99156 * 278.98166 * 5 4 3 38 38 H 1.09003 * 111.02180 * 155.17593 * 5 4 3 39 39 H 1.09001 * 109.46971 * 47.96725 * 8 6 5 40 40 H 1.08998 * 109.46618 * 167.96943 * 8 6 5 41 41 H 1.08999 * 109.47617 * 94.60269 * 11 10 9 42 42 H 1.08997 * 109.46983 * 214.60420 * 11 10 9 43 43 H 1.09004 * 109.46481 * 334.60042 * 11 10 9 44 44 H 1.08993 * 109.47218 * 62.24797 * 16 15 14 45 45 H 1.09005 * 109.47079 * 182.24254 * 16 15 14 46 46 H 0.96997 * 120.00092 * 179.97438 * 20 19 17 47 47 H 1.09007 * 109.47041 * 315.10364 * 25 15 14 48 48 H 1.08998 * 109.47347 * 75.11043 * 25 15 14 49 49 H 1.08992 * 115.54761 * 28.99240 * 26 25 15 50 50 H 1.08998 * 117.50092 * 0.02562 * 27 26 25 51 51 H 1.09002 * 117.49069 * 145.01764 * 27 26 25 52 52 H 1.09003 * 117.50205 * 214.97886 * 28 26 25 53 53 H 1.09008 * 117.50130 * 0.02562 * 28 26 25 54 54 H 1.08996 * 109.88962 * 242.66177 * 29 3 2 55 55 H 1.09000 * 109.89101 * 3.69044 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7334 2.0481 -1.2900 5 6 2.9257 3.0117 -1.5127 6 6 4.1093 2.1807 -0.9509 7 1 4.4752 1.4770 -1.6986 8 6 5.2388 3.0955 -0.4733 9 7 5.9108 3.6878 -1.6325 10 6 5.6699 4.9131 -2.1894 11 6 4.6513 5.9213 -1.7234 12 7 6.4838 5.0473 -3.1980 13 7 7.2165 3.9980 -3.3156 14 6 6.9106 3.1331 -2.3773 15 7 7.4913 1.8902 -2.1815 16 6 8.3728 1.9002 -1.0064 17 6 9.4334 2.9561 -1.1831 18 1 9.4090 3.6072 -2.0445 19 6 10.4348 3.0910 -0.2451 20 7 10.4643 2.2986 0.8041 21 14 11.7491 4.4004 -0.4637 22 1 11.3079 5.6586 0.1901 23 1 13.0165 3.9381 0.1569 24 1 11.9677 4.6453 -1.9120 25 6 8.2181 1.4538 -3.3812 26 6 8.5191 -0.0429 -3.2789 27 6 9.9885 -0.4660 -3.2274 28 6 9.1636 -0.7182 -4.4910 29 6 3.4739 1.4312 0.2390 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3632 0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.8934 -0.5140 -0.8900 35 1 1.6851 1.3122 -2.0926 36 1 0.7996 2.6073 -1.2301 37 1 2.7932 3.9341 -0.9473 38 1 3.0652 3.2226 -2.5730 39 1 4.8253 3.8877 0.1510 40 1 5.9569 2.5144 0.1053 41 1 5.1276 6.6350 -1.0511 42 1 4.2432 6.4502 -2.5846 43 1 3.8464 5.4080 -1.1973 44 1 7.7865 2.1198 -0.1142 45 1 8.8462 0.9242 -0.8990 46 1 11.1691 2.3933 1.4638 47 1 7.6077 1.6421 -4.2644 48 1 9.1534 2.0079 -3.4610 49 1 7.8060 -0.6271 -2.6973 50 1 10.7407 0.3218 -3.2659 51 1 10.2423 -1.3288 -2.6116 52 1 8.8749 -1.7470 -4.7067 53 1 9.3737 -0.0962 -5.3612 54 1 3.6804 1.9652 1.1665 55 1 3.8725 0.4184 0.2978 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001411802342.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:06 Heat of formation + Delta-G solvation = 96.436081 kcal Electronic energy + Delta-G solvation = -32706.241274 eV Core-core repulsion = 28779.702122 eV Total energy + Delta-G solvation = -3926.539152 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.238 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.82208 -40.25358 -39.41573 -37.11421 -36.50477 -34.69016 -33.91677 -32.55895 -30.62285 -30.11889 -29.55594 -28.25474 -27.08981 -26.45882 -24.48155 -23.88074 -23.15486 -22.33104 -22.03397 -21.47022 -21.02581 -20.87800 -18.77298 -18.02726 -17.51872 -17.23952 -16.97017 -16.63055 -16.21781 -16.04169 -15.72096 -15.40238 -15.13792 -14.86307 -14.64493 -14.52862 -14.45775 -14.13729 -13.78682 -13.61719 -13.48313 -13.33690 -13.27990 -13.15482 -13.11437 -12.70160 -12.62020 -12.46323 -12.38773 -12.33031 -12.29854 -12.19053 -12.06283 -12.03923 -11.86205 -11.83749 -11.53072 -11.26332 -11.20467 -10.87613 -10.72294 -10.65635 -10.34684 -9.31915 -9.12021 -8.26917 -6.39278 0.97130 1.26131 1.29042 1.39944 1.47349 2.00126 2.30773 2.87315 2.99137 3.02762 3.10525 3.45493 3.53968 3.59470 3.78366 3.90214 3.95479 4.04257 4.15401 4.17714 4.19017 4.28814 4.30035 4.32799 4.35948 4.51466 4.55864 4.56812 4.62267 4.65273 4.72019 4.73789 4.81035 4.86872 4.90140 4.93770 4.97600 4.98902 5.03606 5.04586 5.07747 5.14178 5.19728 5.23168 5.25143 5.30987 5.31701 5.37045 5.37390 5.65150 5.75292 5.92740 5.97053 6.02472 6.11242 6.51694 6.74796 7.30076 7.94789 8.77726 Molecular weight = 347.24amu Principal moments of inertia in cm(-1) A = 0.009626 B = 0.003639 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2908.154833 B = 7693.295539 C = 8535.670995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.041 3.959 3 N -0.530 5.530 4 C 0.048 3.952 5 C -0.118 4.118 6 C -0.110 4.110 7 H 0.062 0.938 8 C 0.123 3.877 9 N -0.469 5.469 10 C 0.171 3.829 11 C -0.060 4.060 12 N -0.337 5.337 13 N -0.371 5.371 14 C 0.389 3.611 15 N -0.455 5.455 16 C 0.216 3.784 17 C -0.554 4.554 18 H 0.045 0.955 19 C 0.033 3.967 20 N -0.911 5.911 21 Si 0.938 3.062 22 H -0.279 1.279 23 H -0.271 1.271 24 H -0.281 1.281 25 C 0.119 3.881 26 C -0.149 4.149 27 C -0.181 4.181 28 C -0.152 4.152 29 C 0.056 3.944 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.053 0.947 33 H 0.076 0.924 34 H 0.028 0.972 35 H 0.041 0.959 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.062 0.938 39 H 0.120 0.880 40 H 0.080 0.920 41 H 0.092 0.908 42 H 0.104 0.896 43 H 0.102 0.898 44 H 0.015 0.985 45 H 0.040 0.960 46 H 0.267 0.733 47 H 0.065 0.935 48 H 0.032 0.968 49 H 0.109 0.891 50 H 0.073 0.927 51 H 0.099 0.901 52 H 0.119 0.881 53 H 0.094 0.906 54 H 0.089 0.911 55 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.260 -4.000 -0.911 19.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.087 4.087 3 N -0.255 5.255 4 C -0.079 4.079 5 C -0.156 4.156 6 C -0.131 4.131 7 H 0.080 0.920 8 C 0.000 4.000 9 N -0.163 5.163 10 C -0.098 4.098 11 C -0.119 4.119 12 N -0.176 5.176 13 N -0.215 5.215 14 C 0.031 3.969 15 N -0.178 5.178 16 C 0.091 3.909 17 C -0.593 4.593 18 H 0.064 0.936 19 C -0.168 4.168 20 N -0.550 5.550 21 Si 0.764 3.236 22 H -0.205 1.205 23 H -0.196 1.196 24 H -0.207 1.207 25 C -0.009 4.009 26 C -0.168 4.168 27 C -0.218 4.218 28 C -0.190 4.190 29 C -0.073 4.073 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.094 0.906 34 H 0.047 0.953 35 H 0.059 0.941 36 H 0.113 0.887 37 H 0.113 0.887 38 H 0.081 0.919 39 H 0.138 0.862 40 H 0.098 0.902 41 H 0.110 0.890 42 H 0.122 0.878 43 H 0.120 0.880 44 H 0.033 0.967 45 H 0.058 0.942 46 H 0.076 0.924 47 H 0.083 0.917 48 H 0.050 0.950 49 H 0.127 0.873 50 H 0.091 0.909 51 H 0.117 0.883 52 H 0.137 0.863 53 H 0.113 0.887 54 H 0.107 0.893 55 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -19.114 -3.554 -1.426 19.494 hybrid contribution 1.906 0.099 0.350 1.940 sum -17.208 -3.455 -1.076 17.585 Atomic orbital electron populations 1.21706 0.93620 1.02169 1.02337 1.22369 0.97219 0.88446 1.00685 1.63728 1.12856 1.16787 1.32110 1.23042 0.99016 0.96325 0.89533 1.22839 0.92909 0.98919 1.00913 1.22568 0.94665 0.97229 0.98616 0.91952 1.22008 0.94718 0.98301 0.84932 1.46199 1.28479 1.15257 1.26397 1.25482 1.02282 0.87663 0.94349 1.20465 0.93814 0.94250 1.03331 1.73733 1.07427 1.17976 1.18514 1.74482 1.22447 0.99109 1.25452 1.22554 0.90739 0.92288 0.91315 1.59330 1.34093 1.16640 1.07729 1.19529 0.88809 0.96961 0.85615 1.21855 1.11652 1.17937 1.07885 0.93637 1.25426 0.99136 0.97399 0.94878 1.69979 1.34493 1.38847 1.11652 0.85868 0.79740 0.80026 0.77948 1.20517 1.19613 1.20666 1.21291 0.96318 0.93728 0.89566 1.22066 0.96662 0.94256 1.03830 1.22936 0.93877 1.03011 1.01968 1.23030 1.02382 1.02115 0.91435 1.22718 0.87112 0.99830 0.97628 0.91974 0.91338 0.92774 0.90584 0.95340 0.94073 0.88724 0.88659 0.91905 0.86227 0.90151 0.88979 0.87783 0.87963 0.96693 0.94184 0.92400 0.91706 0.94998 0.87330 0.90882 0.88261 0.86327 0.88747 0.89326 0.92531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.96 71.98 0.72 -1.13 16 2 C 0.04 0.67 5.28 86.30 0.46 1.12 16 3 N -0.53 -9.67 5.16 -885.54 -4.57 -14.25 16 4 C 0.05 0.82 5.78 86.77 0.50 1.32 16 5 C -0.12 -2.20 6.04 31.98 0.19 -2.00 16 6 C -0.11 -2.55 3.15 -9.61 -0.03 -2.58 16 7 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 8 C 0.12 3.39 5.23 86.38 0.45 3.84 16 9 N -0.47 -16.75 2.74 -514.85 -1.41 -18.16 16 10 C 0.17 5.88 8.07 137.64 1.11 7.00 16 11 C -0.06 -1.25 10.12 71.24 0.72 -0.53 16 12 N -0.34 -14.71 12.18 -49.53 -0.60 -15.32 16 13 N -0.37 -17.86 10.88 -58.00 -0.63 -18.49 16 14 C 0.39 17.04 5.70 260.11 1.48 18.52 16 15 N -0.45 -19.68 4.71 -710.34 -3.34 -23.02 16 16 C 0.22 10.72 4.95 85.56 0.42 11.14 16 17 C -0.55 -30.98 7.54 25.60 0.19 -30.79 16 18 H 0.05 2.75 6.41 -2.91 -0.02 2.73 16 19 C 0.03 1.83 5.46 84.65 0.46 2.29 16 20 N -0.91 -51.73 13.29 21.45 0.28 -51.45 16 21 Si 0.94 45.64 29.54 68.60 2.03 47.66 16 22 H -0.28 -13.44 7.11 99.48 0.71 -12.74 16 23 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 24 H -0.28 -14.05 7.11 99.48 0.71 -13.34 16 25 C 0.12 4.92 4.59 86.31 0.40 5.31 16 26 C -0.15 -5.16 4.99 -10.79 -0.05 -5.21 16 27 C -0.18 -6.07 10.18 30.59 0.31 -5.76 16 28 C -0.15 -4.19 10.25 30.59 0.31 -3.88 16 29 C 0.06 1.12 6.46 86.65 0.56 1.68 16 30 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.05 0.70 7.49 -2.39 -0.02 0.68 16 33 H 0.08 1.21 8.03 -2.39 -0.02 1.19 16 34 H 0.03 0.50 7.85 -2.38 -0.02 0.48 16 35 H 0.04 0.74 7.62 -2.39 -0.02 0.72 16 36 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 37 H 0.10 1.46 6.05 -2.39 -0.01 1.45 16 38 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.12 2.57 7.33 -2.39 -0.02 2.55 16 40 H 0.08 2.61 6.17 -2.39 -0.01 2.60 16 41 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 43 H 0.10 1.53 5.11 -2.38 -0.01 1.52 16 44 H 0.02 0.78 6.22 -2.39 -0.01 0.77 16 45 H 0.04 2.10 7.32 -2.38 -0.02 2.09 16 46 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 47 H 0.06 2.65 7.83 -2.38 -0.02 2.63 16 48 H 0.03 1.54 6.46 -2.39 -0.02 1.52 16 49 H 0.11 3.63 8.14 -2.39 -0.02 3.61 16 50 H 0.07 2.80 8.03 -2.39 -0.02 2.78 16 51 H 0.10 3.06 8.14 -2.39 -0.02 3.04 16 52 H 0.12 2.58 8.14 -2.39 -0.02 2.56 16 53 H 0.09 2.53 8.14 -2.38 -0.02 2.51 16 54 H 0.09 1.69 7.82 -2.39 -0.02 1.67 16 55 H 0.06 1.19 7.55 -2.39 -0.02 1.17 16 Total: -1.00 -69.92 424.71 0.82 -69.09 By element: Atomic # 1 Polarization: 22.71 SS G_CDS: 0.86 Total: 23.57 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: 8.21 Total: 0.35 kcal Atomic # 7 Polarization: -130.41 SS G_CDS: -10.27 Total: -140.68 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.66 kcal Total: -69.92 0.82 -69.09 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411802342.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.530 kcal (2) G-P(sol) polarization free energy of solvation -69.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds