Wall clock time and date at job start Wed Apr 1 2020 05:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.46846 * 2 1 4 4 C 1.46498 * 119.99516 * 91.49457 * 3 2 1 5 5 C 1.50707 * 109.47260 * 89.99793 * 4 3 2 6 6 H 1.07999 * 119.99506 * 359.97438 * 5 4 3 7 7 C 1.37880 * 120.00096 * 179.97438 * 5 4 3 8 8 N 1.31514 * 120.00067 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 119.99973 * 0.02562 * 7 5 4 10 10 H 1.48495 * 109.47359 * 89.99355 * 9 7 5 11 11 H 1.48497 * 109.46727 * 209.99959 * 9 7 5 12 12 H 1.48508 * 109.47080 * 329.99431 * 9 7 5 13 13 C 1.34768 * 120.00376 * 271.48897 * 3 2 1 14 14 O 1.21644 * 120.00231 * 185.61499 * 13 3 2 15 15 C 1.47025 * 119.99968 * 5.61852 * 13 3 2 16 16 S 1.77233 * 127.75996 * 6.35456 * 15 13 3 17 17 N 1.69670 * 95.30345 * 179.97438 * 16 15 13 18 18 C 1.30323 * 107.66475 * 0.31462 * 17 16 15 19 19 O 1.35970 * 120.83338 * 179.77673 * 18 17 16 20 20 C 1.42905 * 116.99671 * 359.97438 * 19 18 17 21 21 C 1.37678 * 118.33803 * 359.76338 * 18 17 16 22 22 Br 1.89108 * 122.89290 * 180.02562 * 21 18 17 23 23 H 1.09008 * 109.47054 * 59.99923 * 1 2 3 24 24 H 1.08998 * 109.47308 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47193 * 299.99831 * 1 2 3 26 26 H 1.09004 * 109.46846 * 240.00643 * 2 1 3 27 27 H 1.08995 * 109.47121 * 120.00364 * 2 1 3 28 28 H 1.09006 * 109.47221 * 209.99695 * 4 3 2 29 29 H 1.08997 * 109.47679 * 329.99650 * 4 3 2 30 30 H 0.96989 * 119.99842 * 180.02562 * 8 7 5 31 31 H 1.09002 * 109.46592 * 299.99269 * 20 19 18 32 32 H 1.08998 * 109.47612 * 59.99089 * 20 19 18 33 33 H 1.09004 * 109.46732 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2935 2.0607 1.2683 5 6 3.7271 1.8203 1.6663 6 1 4.3687 1.2209 1.0374 7 6 4.2194 2.3655 2.8331 8 7 5.4703 2.1553 3.1806 9 14 3.1093 3.4017 3.9210 10 1 2.4286 2.5271 4.9093 11 1 3.9244 4.4161 4.6363 12 1 2.0925 4.0856 3.0821 13 6 2.2143 2.0267 -1.1667 14 8 2.7153 3.1352 -1.1719 15 6 1.8224 1.3913 -2.4333 16 16 0.9442 -0.1318 -2.6572 17 7 0.9447 -0.0653 -4.3526 18 6 1.5688 1.0230 -4.7055 19 8 1.7289 1.3402 -6.0180 20 6 1.1850 0.4301 -6.9763 21 6 2.0618 1.8437 -3.7161 22 35 2.9863 3.4523 -4.0820 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 2.1235 3.1311 1.1515 29 1 1.6316 1.6700 2.0411 30 1 5.8165 2.5386 4.0015 31 1 1.6496 -0.5481 -6.8526 32 1 0.1091 0.3431 -6.8250 33 1 1.3814 0.8015 -7.9821 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412446633.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:41 Heat of formation + Delta-G solvation = -0.393053 kcal Electronic energy + Delta-G solvation = -20527.678513 eV Core-core repulsion = 17149.489079 eV Total energy + Delta-G solvation = -3378.189434 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 347.993 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.30508 -39.36030 -36.69325 -35.62296 -32.94462 -32.16330 -30.66723 -29.91495 -28.32836 -27.73341 -24.79904 -23.27604 -22.69391 -20.74847 -18.98493 -18.27857 -17.68618 -16.99986 -16.45308 -16.17713 -15.79085 -14.85093 -14.73075 -14.40800 -14.12363 -13.79273 -13.44267 -13.03337 -12.64741 -12.39208 -12.30561 -12.00243 -11.81383 -11.60775 -11.55185 -11.23616 -11.04579 -10.81581 -10.73926 -10.55107 -10.19939 -10.05325 -9.60828 -9.38388 -9.25795 -8.64521 -8.29873 -7.95501 -6.13367 -4.13508 -0.00673 0.76192 1.39179 1.97677 2.01018 2.79049 3.23199 3.31627 3.34865 3.36976 3.53797 4.34773 4.39347 4.76089 4.93695 4.97226 4.99931 5.04507 5.19647 5.25484 5.34805 5.47202 5.76638 5.86801 5.95215 6.23219 6.50587 6.79445 6.82300 7.06430 7.51063 7.89115 8.35914 8.59272 8.90214 9.45171 10.99803 Molecular weight = 347.99amu Principal moments of inertia in cm(-1) A = 0.016836 B = 0.004485 C = 0.003752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.658196 B = 6241.136774 C = 7460.760478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.091 3.909 3 N -0.577 5.577 4 C 0.220 3.780 5 C -0.532 4.532 6 H 0.077 0.923 7 C 0.075 3.925 8 N -0.894 5.894 9 Si 0.873 3.127 10 H -0.275 1.275 11 H -0.283 1.283 12 H -0.263 1.263 13 C 0.572 3.428 14 O -0.484 6.484 15 C -0.145 4.145 16 S 0.347 5.653 17 N -0.545 5.545 18 C 0.326 3.674 19 O -0.289 6.289 20 C 0.038 3.962 21 C -0.128 4.128 22 Br 0.036 6.964 23 H 0.058 0.942 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.105 0.895 28 H 0.045 0.955 29 H 0.033 0.967 30 H 0.266 0.734 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.566 -4.820 -16.000 20.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.036 4.036 3 N -0.309 5.309 4 C 0.100 3.900 5 C -0.571 4.571 6 H 0.095 0.905 7 C -0.128 4.128 8 N -0.532 5.532 9 Si 0.699 3.301 10 H -0.200 1.200 11 H -0.209 1.209 12 H -0.188 1.188 13 C 0.355 3.645 14 O -0.358 6.358 15 C -0.279 4.279 16 S 0.498 5.502 17 N -0.384 5.384 18 C 0.111 3.889 19 O -0.194 6.194 20 C -0.058 4.058 21 C -0.228 4.228 22 Br 0.119 6.881 23 H 0.077 0.923 24 H 0.093 0.907 25 H 0.090 0.910 26 H 0.086 0.914 27 H 0.123 0.877 28 H 0.063 0.937 29 H 0.051 0.949 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -11.762 -5.231 -15.970 20.513 hybrid contribution 0.124 1.249 0.174 1.267 sum -11.638 -3.982 -15.797 20.021 Atomic orbital electron populations 1.22456 0.95866 1.02924 1.02777 1.21833 0.94246 0.83965 1.03526 1.47851 1.63272 1.13042 1.06707 1.19792 0.97562 0.93749 0.78900 1.21272 0.94579 1.33715 1.07516 0.90523 1.24830 0.94957 0.95610 0.97361 1.69884 1.14140 1.44822 1.24313 0.86901 0.81209 0.80919 0.81058 1.20026 1.20857 1.18755 1.16564 0.80751 0.85936 0.81298 1.90911 1.40958 1.18684 1.85230 1.26440 1.03120 1.00805 0.97580 1.85569 1.50694 1.17327 0.96638 1.76332 1.27910 1.21506 1.12694 1.19263 0.93417 0.89555 0.86628 1.86366 1.74553 1.48084 1.10418 1.22972 0.99144 0.93339 0.90310 1.21275 1.09516 1.00368 0.91606 1.96786 1.72845 1.23709 1.94719 0.92349 0.90705 0.91045 0.91386 0.87658 0.93672 0.94937 0.92448 0.92108 0.92167 0.87991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.04 9.06 37.16 0.34 -1.70 16 2 C 0.09 1.31 5.63 -4.04 -0.02 1.29 16 3 N -0.58 -11.22 2.46 -176.48 -0.43 -11.65 16 4 C 0.22 5.01 4.18 -5.19 -0.02 4.99 16 5 C -0.53 -14.61 9.94 -34.44 -0.34 -14.96 16 6 H 0.08 2.33 8.06 -52.49 -0.42 1.91 16 7 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 8 N -0.89 -26.85 13.96 55.43 0.77 -26.08 16 9 Si 0.87 20.63 27.47 -169.99 -4.67 15.96 16 10 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 12 H -0.26 -6.02 6.54 56.52 0.37 -5.65 16 13 C 0.57 11.53 7.63 -12.70 -0.10 11.43 16 14 O -0.48 -11.38 14.78 5.24 0.08 -11.31 16 15 C -0.14 -2.42 6.36 -36.07 -0.23 -2.65 16 16 S 0.35 4.48 16.65 -107.50 -1.79 2.69 16 17 N -0.54 -7.57 11.02 29.21 0.32 -7.24 16 18 C 0.33 4.80 7.36 -18.40 -0.14 4.67 16 19 O -0.29 -3.78 10.09 -19.65 -0.20 -3.98 16 20 C 0.04 0.34 10.43 101.05 1.05 1.39 16 21 C -0.13 -2.10 6.30 -39.83 -0.25 -2.36 16 22 Br 0.04 0.59 31.68 -68.01 -2.15 -1.56 16 23 H 0.06 0.66 5.98 -44.72 -0.27 0.39 16 24 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.07 0.91 4.73 -26.49 -0.13 0.79 16 27 H 0.11 1.52 8.06 -51.93 -0.42 1.10 16 28 H 0.05 1.11 6.56 -51.93 -0.34 0.77 16 29 H 0.03 0.68 7.50 -51.93 -0.39 0.29 16 30 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 31 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 32 H 0.06 0.52 8.12 -51.93 -0.42 0.10 16 33 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 311.13 15.07 4.69 4.69 Total: -1.00 -32.31 311.13 -6.43 -38.74 By element: Atomic # 1 Polarization: -1.15 SS G_CDS: -3.24 Total: -4.40 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: 0.19 Total: 4.13 kcal Atomic # 7 Polarization: -45.64 SS G_CDS: 0.66 Total: -44.97 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: -0.12 Total: -15.28 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -4.67 Total: 15.96 kcal Atomic # 16 Polarization: 4.48 SS G_CDS: -1.79 Total: 2.69 kcal Atomic # 35 Polarization: 0.59 SS G_CDS: -2.15 Total: -1.56 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -32.31 -6.43 -38.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412446633.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.351 kcal (2) G-P(sol) polarization free energy of solvation -32.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds