Wall clock time and date at job start Wed Apr 1 2020 05:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.46846 * 2 1 4 4 C 1.46498 * 119.99516 * 91.49457 * 3 2 1 5 5 C 1.50707 * 109.47260 * 89.99793 * 4 3 2 6 6 H 1.07999 * 119.99506 * 359.97438 * 5 4 3 7 7 C 1.37880 * 120.00096 * 179.97438 * 5 4 3 8 8 N 1.31514 * 120.00067 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 119.99973 * 0.02562 * 7 5 4 10 10 H 1.48495 * 109.47359 * 89.99355 * 9 7 5 11 11 H 1.48497 * 109.46727 * 209.99959 * 9 7 5 12 12 H 1.48508 * 109.47080 * 329.99431 * 9 7 5 13 13 C 1.34768 * 120.00376 * 271.48897 * 3 2 1 14 14 O 1.21644 * 120.00231 * 185.61499 * 13 3 2 15 15 C 1.47025 * 119.99968 * 5.61852 * 13 3 2 16 16 S 1.77233 * 127.75996 * 6.35456 * 15 13 3 17 17 N 1.69670 * 95.30345 * 179.97438 * 16 15 13 18 18 C 1.30323 * 107.66475 * 0.31462 * 17 16 15 19 19 O 1.35970 * 120.83338 * 179.77673 * 18 17 16 20 20 C 1.42905 * 116.99671 * 359.97438 * 19 18 17 21 21 C 1.37678 * 118.33803 * 359.76338 * 18 17 16 22 22 Br 1.89108 * 122.89290 * 180.02562 * 21 18 17 23 23 H 1.09008 * 109.47054 * 59.99923 * 1 2 3 24 24 H 1.08998 * 109.47308 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47193 * 299.99831 * 1 2 3 26 26 H 1.09004 * 109.46846 * 240.00643 * 2 1 3 27 27 H 1.08995 * 109.47121 * 120.00364 * 2 1 3 28 28 H 1.09006 * 109.47221 * 209.99695 * 4 3 2 29 29 H 1.08997 * 109.47679 * 329.99650 * 4 3 2 30 30 H 0.96989 * 119.99842 * 180.02562 * 8 7 5 31 31 H 1.09002 * 109.46592 * 299.99269 * 20 19 18 32 32 H 1.08998 * 109.47612 * 59.99089 * 20 19 18 33 33 H 1.09004 * 109.46732 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2935 2.0607 1.2683 5 6 3.7271 1.8203 1.6663 6 1 4.3687 1.2209 1.0374 7 6 4.2194 2.3655 2.8331 8 7 5.4703 2.1553 3.1806 9 14 3.1093 3.4017 3.9210 10 1 2.4286 2.5271 4.9093 11 1 3.9244 4.4161 4.6363 12 1 2.0925 4.0856 3.0821 13 6 2.2143 2.0267 -1.1667 14 8 2.7153 3.1352 -1.1719 15 6 1.8224 1.3913 -2.4333 16 16 0.9442 -0.1318 -2.6572 17 7 0.9447 -0.0653 -4.3526 18 6 1.5688 1.0230 -4.7055 19 8 1.7289 1.3402 -6.0180 20 6 1.1850 0.4301 -6.9763 21 6 2.0618 1.8437 -3.7161 22 35 2.9863 3.4523 -4.0820 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 2.1235 3.1311 1.1515 29 1 1.6316 1.6700 2.0411 30 1 5.8165 2.5386 4.0015 31 1 1.6496 -0.5481 -6.8526 32 1 0.1091 0.3431 -6.8250 33 1 1.3814 0.8015 -7.9821 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001412446633.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:40 Heat of formation + Delta-G solvation = -24.449624 kcal Electronic energy + Delta-G solvation = -20528.721684 eV Core-core repulsion = 17149.489079 eV Total energy + Delta-G solvation = -3379.232605 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 347.993 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.42579 -40.80504 -37.81059 -37.09365 -34.91338 -33.46803 -32.12391 -31.17160 -29.71508 -28.88874 -26.16057 -24.57264 -24.14925 -22.11468 -20.25643 -19.58028 -19.08529 -18.78586 -17.54173 -17.40184 -17.27142 -16.40959 -15.98149 -15.81304 -15.39235 -15.15897 -14.69517 -14.46297 -14.17531 -13.80854 -13.52152 -13.39980 -13.08033 -12.74137 -12.66799 -12.58732 -12.42735 -12.33797 -11.99201 -11.85498 -11.82268 -11.72067 -11.35837 -10.78062 -10.75183 -10.63672 -9.60770 -9.32119 -8.29527 -6.35380 -1.26826 -0.41995 0.29809 0.74798 0.83637 1.37057 1.41546 1.51464 1.63311 1.90935 2.22609 2.35422 3.04291 3.18057 3.56172 3.77568 3.86071 4.19790 4.27579 4.37047 4.46196 4.69971 4.74634 4.80894 4.86002 4.90683 4.96706 5.34106 5.44313 5.49234 5.84810 6.23328 6.38493 6.66832 7.02019 7.29054 8.87428 Molecular weight = 347.99amu Principal moments of inertia in cm(-1) A = 0.016836 B = 0.004485 C = 0.003752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.658196 B = 6241.136774 C = 7460.760478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.081 3.919 3 N -0.583 5.583 4 C 0.228 3.772 5 C -0.536 4.536 6 H 0.029 0.971 7 C 0.014 3.986 8 N -0.946 5.946 9 Si 0.945 3.055 10 H -0.249 1.249 11 H -0.287 1.287 12 H -0.250 1.250 13 C 0.567 3.433 14 O -0.532 6.532 15 C -0.177 4.177 16 S 0.429 5.571 17 N -0.543 5.543 18 C 0.323 3.677 19 O -0.299 6.299 20 C 0.030 3.970 21 C -0.136 4.136 22 Br 0.022 6.978 23 H 0.058 0.942 24 H 0.112 0.888 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.106 0.894 28 H 0.029 0.971 29 H 0.063 0.937 30 H 0.268 0.732 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.478 -6.160 -16.325 22.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.044 4.044 3 N -0.314 5.314 4 C 0.107 3.893 5 C -0.575 4.575 6 H 0.047 0.953 7 C -0.184 4.184 8 N -0.586 5.586 9 Si 0.767 3.233 10 H -0.173 1.173 11 H -0.213 1.213 12 H -0.174 1.174 13 C 0.352 3.648 14 O -0.409 6.409 15 C -0.312 4.312 16 S 0.581 5.419 17 N -0.385 5.385 18 C 0.109 3.891 19 O -0.205 6.205 20 C -0.064 4.064 21 C -0.237 4.237 22 Br 0.106 6.894 23 H 0.077 0.923 24 H 0.130 0.870 25 H 0.091 0.909 26 H 0.096 0.904 27 H 0.124 0.876 28 H 0.047 0.953 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -14.716 -6.633 -16.323 22.956 hybrid contribution 1.055 1.508 0.156 1.847 sum -13.661 -5.125 -16.167 21.778 Atomic orbital electron populations 1.22446 0.92705 1.05392 1.02883 1.22185 0.96765 0.81276 1.04140 1.47904 1.63137 1.14788 1.05533 1.19490 0.95056 0.93546 0.81192 1.21502 0.96527 1.32666 1.06780 0.95263 1.25815 0.96484 0.96985 0.99152 1.70051 1.16553 1.46662 1.25290 0.85756 0.79212 0.79118 0.79176 1.17341 1.21302 1.17373 1.16951 0.79864 0.85575 0.82408 1.90867 1.43070 1.20799 1.86212 1.26062 1.05497 1.03510 0.96119 1.85169 1.47663 1.13586 0.95450 1.76282 1.27523 1.21062 1.13585 1.19085 0.93489 0.89309 0.87184 1.86370 1.74776 1.49275 1.10061 1.23295 0.99335 0.93122 0.90617 1.21420 1.09794 1.00343 0.92164 1.96752 1.73216 1.24736 1.94704 0.92310 0.86966 0.90893 0.90393 0.87607 0.95265 0.91888 0.92329 0.91880 0.91655 0.85067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.31 9.06 71.98 0.65 -2.65 16 2 C 0.08 2.18 5.63 86.38 0.49 2.67 16 3 N -0.58 -22.44 2.46 -830.50 -2.04 -24.48 16 4 C 0.23 10.35 4.18 85.64 0.36 10.70 16 5 C -0.54 -30.24 9.94 25.60 0.25 -29.99 16 6 H 0.03 1.87 8.06 -2.91 -0.02 1.84 16 7 C 0.01 0.79 5.47 84.66 0.46 1.25 16 8 N -0.95 -58.61 13.96 21.45 0.30 -58.31 16 9 Si 0.94 42.39 27.47 68.60 1.88 44.27 16 10 H -0.25 -10.14 7.11 99.48 0.71 -9.44 16 11 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 12 H -0.25 -10.62 6.54 99.48 0.65 -9.96 16 13 C 0.57 23.12 7.63 86.55 0.66 23.78 16 14 O -0.53 -25.93 14.78 -4.17 -0.06 -26.00 16 15 C -0.18 -5.82 6.36 24.55 0.16 -5.66 16 16 S 0.43 9.91 16.65 -56.49 -0.94 8.97 16 17 N -0.54 -13.69 11.02 -175.15 -1.93 -15.62 16 18 C 0.32 9.03 7.36 84.78 0.62 9.65 16 19 O -0.30 -7.38 10.09 -93.21 -0.94 -8.32 16 20 C 0.03 0.48 10.43 113.37 1.18 1.66 16 21 C -0.14 -4.41 6.30 22.11 0.14 -4.28 16 22 Br 0.02 0.75 31.68 -20.37 -0.65 0.11 16 23 H 0.06 1.12 5.98 -6.96 -0.04 1.08 16 24 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 25 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.08 1.92 4.73 -18.56 -0.09 1.83 16 27 H 0.11 2.87 8.06 -2.39 -0.02 2.85 16 28 H 0.03 1.43 6.56 -2.38 -0.02 1.41 16 29 H 0.06 2.49 7.50 -2.39 -0.02 2.47 16 30 H 0.27 15.46 8.31 -92.72 -0.77 14.69 16 31 H 0.06 0.97 8.13 -2.39 -0.02 0.95 16 32 H 0.06 0.97 8.12 -2.39 -0.02 0.95 16 33 H 0.13 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -73.53 311.13 1.59 -71.93 By element: Atomic # 1 Polarization: -0.69 SS G_CDS: 0.99 Total: 0.30 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: 4.98 Total: 7.14 kcal Atomic # 7 Polarization: -94.74 SS G_CDS: -3.67 Total: -98.41 kcal Atomic # 8 Polarization: -33.31 SS G_CDS: -1.00 Total: -34.31 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 1.88 Total: 44.27 kcal Atomic # 16 Polarization: 9.91 SS G_CDS: -0.94 Total: 8.97 kcal Atomic # 35 Polarization: 0.75 SS G_CDS: -0.65 Total: 0.11 kcal Total: -73.53 1.59 -71.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412446633.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.485 kcal (2) G-P(sol) polarization free energy of solvation -73.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds