Wall clock time and date at job start Wed Apr 1 2020 04:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.46307 * 2 1 4 4 C 1.50701 * 109.47172 * 240.00389 * 2 1 3 5 5 H 1.07993 * 119.99917 * 239.99728 * 4 2 1 6 6 C 1.37880 * 119.99944 * 59.99901 * 4 2 1 7 7 N 1.31520 * 119.99709 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00048 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46815 * 89.99520 * 8 6 4 10 10 H 1.48493 * 109.47422 * 209.99732 * 8 6 4 11 11 H 1.48497 * 109.47007 * 329.99955 * 8 6 4 12 12 N 1.46899 * 109.47376 * 120.00127 * 2 1 3 13 13 C 1.46895 * 110.99852 * 58.95662 * 12 2 1 14 14 C 1.38580 * 111.00125 * 295.00531 * 12 2 1 15 15 N 1.31217 * 126.47152 * 14.14779 * 14 12 2 16 16 N 1.28529 * 109.85944 * 179.97438 * 15 14 12 17 17 C 1.30294 * 110.05686 * 359.72011 * 16 15 14 18 18 C 1.50693 * 126.35586 * 180.31754 * 17 16 15 19 19 C 1.53005 * 117.49388 * 8.77007 * 18 17 16 20 20 C 1.53004 * 60.00064 * 252.51167 * 19 18 17 21 21 N 1.36452 * 126.47296 * 194.13001 * 14 12 2 22 22 C 1.46497 * 127.13651 * 0.02562 * 21 14 12 23 23 C 1.53007 * 109.46985 * 87.15818 * 22 21 14 24 24 N 1.46899 * 112.90649 * 164.82603 * 23 22 21 25 25 C 1.46897 * 111.00106 * 305.15397 * 24 23 22 26 26 C 1.46905 * 110.99717 * 69.10985 * 24 23 22 27 27 C 1.53781 * 113.61245 * 33.57897 * 23 22 21 28 28 C 1.53783 * 87.07943 * 220.02088 * 27 23 22 29 29 C 1.53776 * 113.61113 * 296.08019 * 23 22 21 30 30 H 1.08997 * 109.47475 * 299.99250 * 1 2 3 31 31 H 1.08998 * 109.47436 * 60.00183 * 1 2 3 32 32 H 1.09010 * 109.46586 * 179.97438 * 1 2 3 33 33 H 0.97001 * 119.99128 * 180.02562 * 7 6 4 34 34 H 1.09001 * 109.47484 * 291.45551 * 13 12 2 35 35 H 1.09002 * 109.47203 * 51.46024 * 13 12 2 36 36 H 1.08999 * 109.46953 * 171.45930 * 13 12 2 37 37 H 1.08996 * 115.55750 * 154.48308 * 18 17 16 38 38 H 1.08994 * 117.50148 * 0.02562 * 19 18 17 39 39 H 1.09002 * 117.49913 * 145.03001 * 19 18 17 40 40 H 1.08998 * 117.50104 * 252.50659 * 20 19 18 41 41 H 1.09008 * 117.51383 * 107.48201 * 20 19 18 42 42 H 1.09001 * 109.47263 * 327.15621 * 22 21 14 43 43 H 1.09007 * 109.47043 * 207.15226 * 22 21 14 44 44 H 1.08997 * 109.47340 * 65.88118 * 25 24 23 45 45 H 1.09005 * 109.46667 * 185.87790 * 25 24 23 46 46 H 1.08999 * 109.47230 * 305.87960 * 25 24 23 47 47 H 1.08996 * 109.47055 * 59.99373 * 26 24 23 48 48 H 1.08992 * 109.47025 * 180.02562 * 26 24 23 49 49 H 1.09006 * 109.46599 * 299.99658 * 26 24 23 50 50 H 1.09001 * 113.61410 * 334.56266 * 27 23 22 51 51 H 1.08996 * 113.61356 * 105.47384 * 27 23 22 52 52 H 1.09005 * 113.61488 * 270.88522 * 28 27 23 53 53 H 1.08996 * 113.69170 * 139.99224 * 28 27 23 54 54 H 1.09001 * 113.61538 * 254.52929 * 29 23 22 55 55 H 1.09000 * 113.62092 * 25.35280 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5883 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9427 0.8299 -2.6033 8 14 2.3225 -1.1192 -4.0080 9 1 1.3448 -2.1613 -4.4124 10 1 2.4872 -0.1399 -5.1120 11 1 3.6309 -1.7562 -3.7121 12 7 2.0197 -0.6925 1.1994 13 6 1.5285 -2.0761 1.2458 14 6 1.6697 -0.0024 2.3490 15 7 0.7878 0.9649 2.4401 16 7 0.7148 1.3763 3.6556 17 6 1.5347 0.6975 4.4070 18 6 1.7399 0.8719 5.8897 19 6 0.7735 1.7968 6.6325 20 6 2.2159 2.2406 6.3808 21 7 2.1769 -0.2007 3.6002 22 6 3.1937 -1.1775 3.9978 23 6 4.5856 -0.5728 3.8031 24 7 5.6387 -1.3270 4.4959 25 6 5.3281 -1.4740 5.9241 26 6 5.8497 -2.6370 3.8654 27 6 4.6408 0.9421 4.0620 28 6 5.5804 1.0358 2.8482 29 6 4.9192 -0.2547 2.3360 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0278 -0.0005 33 1 0.7081 1.1610 -3.4843 34 1 0.4519 -2.0739 1.4164 35 1 1.7454 -2.5707 0.2990 36 1 2.0236 -2.6104 2.0567 37 1 2.1036 -0.0076 6.4208 38 1 -0.0108 2.2787 6.0489 39 1 0.5012 1.5257 7.6526 40 1 2.8925 2.2615 7.2351 41 1 2.3811 3.0147 5.6313 42 1 3.0972 -2.0728 3.3836 43 1 3.0550 -1.4398 5.0468 44 1 4.4407 -2.0960 6.0409 45 1 6.1703 -1.9434 6.4326 46 1 5.1430 -0.4916 6.3587 47 1 6.1465 -2.4964 2.8261 48 1 6.6340 -3.1745 4.3982 49 1 4.9245 -3.2121 3.9045 50 1 3.6853 1.4454 3.9143 51 1 5.1185 1.2066 5.0053 52 1 6.6338 0.9159 3.1012 53 1 5.3931 1.9032 2.2154 54 1 5.6216 -0.9563 1.8859 55 1 4.0398 -0.0800 1.7161 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001417464793.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:47 Heat of formation + Delta-G solvation = 159.782892 kcal Electronic energy + Delta-G solvation = -34186.202768 eV Core-core repulsion = 30262.410540 eV Total energy + Delta-G solvation = -3923.792228 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.238 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -44.11962 -40.95455 -39.20627 -37.86258 -36.01811 -35.55983 -34.70720 -31.10057 -30.41094 -29.45816 -28.88533 -27.28673 -27.03826 -26.16176 -25.53953 -24.83198 -23.41741 -23.28639 -22.92086 -21.46116 -20.76801 -19.42660 -18.30812 -17.90629 -17.87406 -17.24259 -16.83624 -16.80808 -16.28591 -15.86235 -15.68398 -15.39416 -15.26638 -15.13815 -14.95004 -14.68641 -14.55378 -14.32436 -13.47439 -13.34089 -13.28637 -13.14184 -13.00290 -12.88845 -12.78260 -12.71329 -12.61152 -12.56863 -12.38575 -12.25743 -12.12975 -12.02975 -11.96563 -11.91447 -11.76141 -11.70748 -11.44816 -11.26310 -11.01545 -11.00290 -10.79714 -10.48389 -10.26030 -9.25375 -9.01456 -8.11239 -6.25971 0.81746 1.28545 1.44122 1.45299 1.55677 1.86546 2.41470 2.79853 2.98411 3.04986 3.18507 3.21515 3.35151 3.64218 3.69686 3.76561 3.92136 3.96864 3.98830 4.00165 4.10059 4.21792 4.26121 4.42791 4.48316 4.49542 4.51494 4.64949 4.69993 4.71995 4.78889 4.80860 4.83762 4.91404 4.95185 4.95861 4.99295 5.02108 5.02990 5.12254 5.14654 5.18007 5.20277 5.30304 5.33635 5.36237 5.46019 5.49651 5.62751 5.64744 5.85105 6.03850 6.08083 6.14614 6.23562 6.62100 6.83568 7.42800 7.89955 8.95168 Molecular weight = 347.24amu Principal moments of inertia in cm(-1) A = 0.011410 B = 0.004313 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2453.436139 B = 6490.762485 C = 7972.388711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.247 3.753 3 H -0.003 1.003 4 C -0.520 4.520 5 H 0.071 0.929 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.966 3.034 9 H -0.274 1.274 10 H -0.289 1.289 11 H -0.263 1.263 12 N -0.447 5.447 13 C 0.039 3.961 14 C 0.368 3.632 15 N -0.361 5.361 16 N -0.332 5.332 17 C 0.210 3.790 18 C -0.090 4.090 19 C -0.147 4.147 20 C -0.144 4.144 21 N -0.462 5.462 22 C 0.091 3.909 23 C 0.092 3.908 24 N -0.515 5.515 25 C 0.014 3.986 26 C 0.018 3.982 27 C -0.111 4.111 28 C -0.129 4.129 29 C -0.145 4.145 30 H 0.048 0.952 31 H 0.058 0.942 32 H 0.025 0.975 33 H 0.261 0.739 34 H 0.021 0.979 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.148 0.852 38 H 0.081 0.919 39 H 0.134 0.866 40 H 0.137 0.863 41 H 0.074 0.926 42 H 0.093 0.907 43 H 0.119 0.881 44 H 0.036 0.964 45 H 0.087 0.913 46 H 0.076 0.924 47 H 0.062 0.938 48 H 0.089 0.911 49 H 0.031 0.969 50 H 0.056 0.944 51 H 0.090 0.910 52 H 0.096 0.904 53 H 0.038 0.962 54 H 0.070 0.930 55 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.770 -7.347 22.691 25.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.141 3.859 3 H 0.015 0.985 4 C -0.558 4.558 5 H 0.089 0.911 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.791 3.209 9 H -0.199 1.199 10 H -0.214 1.214 11 H -0.187 1.187 12 N -0.171 5.171 13 C -0.108 4.108 14 C 0.011 3.989 15 N -0.204 5.204 16 N -0.170 5.170 17 C -0.058 4.058 18 C -0.110 4.110 19 C -0.185 4.185 20 C -0.182 4.182 21 N -0.157 5.157 22 C -0.034 4.034 23 C 0.001 3.999 24 N -0.238 5.238 25 C -0.133 4.133 26 C -0.130 4.130 27 C -0.149 4.149 28 C -0.167 4.167 29 C -0.183 4.183 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.044 0.956 33 H 0.070 0.930 34 H 0.040 0.960 35 H 0.109 0.891 36 H 0.097 0.903 37 H 0.166 0.834 38 H 0.100 0.900 39 H 0.152 0.848 40 H 0.155 0.845 41 H 0.093 0.907 42 H 0.111 0.889 43 H 0.137 0.863 44 H 0.055 0.945 45 H 0.105 0.895 46 H 0.095 0.905 47 H 0.081 0.919 48 H 0.108 0.892 49 H 0.049 0.951 50 H 0.075 0.925 51 H 0.108 0.892 52 H 0.114 0.886 53 H 0.056 0.944 54 H 0.088 0.912 55 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 9.628 -6.019 22.043 24.796 hybrid contribution -0.734 -1.284 -1.375 2.019 sum 8.894 -7.302 20.668 23.656 Atomic orbital electron populations 1.22341 0.99449 0.98776 1.01527 1.18851 0.90752 0.92079 0.84252 0.98513 1.21290 1.31515 1.12985 0.90006 0.91056 1.25751 0.95136 0.95634 1.02080 1.70097 1.37414 1.24167 1.24122 0.85438 0.79018 0.78049 0.78410 1.19949 1.21446 1.18687 1.59249 1.56176 1.03388 0.98270 1.22404 0.97411 0.87019 1.04002 1.22977 0.92749 0.97304 0.85884 1.74725 1.18203 1.15308 1.12154 1.73831 1.21368 1.24259 0.97582 1.24252 0.94673 0.91058 0.95816 1.20283 1.09614 0.97923 0.83182 1.23067 0.93323 1.00540 1.01538 1.23095 0.98223 0.93824 1.03064 1.46034 1.32606 1.30689 1.06328 1.22545 0.87225 0.90550 1.03036 1.22314 0.87532 0.94343 0.95756 1.62137 1.39775 1.18353 1.03487 1.22573 1.01128 1.02538 0.87047 1.22484 1.01118 0.88834 1.00564 1.22795 0.98897 0.93838 0.99353 1.22648 0.99842 0.96903 0.97296 1.23281 1.01737 0.98108 0.95155 0.93321 0.92343 0.95633 0.92962 0.96019 0.89055 0.90301 0.83443 0.90024 0.84783 0.84513 0.90736 0.88875 0.86338 0.94536 0.89459 0.90531 0.91931 0.89237 0.95065 0.92510 0.89199 0.88553 0.94353 0.91186 0.89720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -8.69 8.27 71.98 0.60 -8.10 16 2 C 0.25 13.09 2.08 44.17 0.09 13.18 16 3 H 0.00 -0.19 8.11 -2.39 -0.02 -0.21 16 4 C -0.52 -28.09 7.82 25.60 0.20 -27.89 16 5 H 0.07 3.66 6.80 -2.91 -0.02 3.64 16 6 C 0.01 0.73 5.30 84.65 0.45 1.18 16 7 N -0.92 -54.53 11.32 21.45 0.24 -54.28 16 8 Si 0.97 43.30 29.54 68.60 2.03 45.32 16 9 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 10 H -0.29 -12.96 7.11 99.48 0.71 -12.26 16 11 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 12 N -0.45 -19.29 2.96 -711.00 -2.11 -21.40 16 13 C 0.04 1.42 8.58 127.69 1.10 2.51 16 14 C 0.37 15.33 5.63 260.11 1.46 16.79 16 15 N -0.36 -17.18 8.97 -58.00 -0.52 -17.70 16 16 N -0.33 -13.81 11.79 -49.54 -0.58 -14.39 16 17 C 0.21 6.62 5.75 137.63 0.79 7.41 16 18 C -0.09 -1.78 5.97 -11.54 -0.07 -1.85 16 19 C -0.15 -2.61 10.15 30.60 0.31 -2.30 16 20 C -0.14 -2.43 10.23 30.60 0.31 -2.11 16 21 N -0.46 -14.62 1.87 -514.84 -0.96 -15.58 16 22 C 0.09 2.09 4.97 86.38 0.43 2.52 16 23 C 0.09 2.07 0.44 4.05 0.00 2.08 16 24 N -0.51 -8.83 4.81 -895.69 -4.31 -13.14 16 25 C 0.01 0.16 8.94 127.69 1.14 1.30 16 26 C 0.02 0.27 9.25 127.69 1.18 1.46 16 27 C -0.11 -2.78 6.89 31.12 0.21 -2.56 16 28 C -0.13 -3.66 7.99 31.12 0.25 -3.41 16 29 C -0.14 -4.40 7.05 31.12 0.22 -4.18 16 30 H 0.05 2.64 5.40 -2.39 -0.01 2.62 16 31 H 0.06 3.47 6.07 -2.39 -0.01 3.46 16 32 H 0.02 1.28 6.58 -2.38 -0.02 1.26 16 33 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 34 H 0.02 0.83 6.76 -2.39 -0.02 0.81 16 35 H 0.09 3.46 6.31 -2.39 -0.02 3.45 16 36 H 0.08 2.30 5.90 -2.39 -0.01 2.28 16 37 H 0.15 1.94 7.48 -2.39 -0.02 1.92 16 38 H 0.08 1.96 7.92 -2.39 -0.02 1.94 16 39 H 0.13 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.14 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 42 H 0.09 2.20 5.34 -2.39 -0.01 2.19 16 43 H 0.12 1.97 5.28 -2.38 -0.01 1.95 16 44 H 0.04 0.35 6.54 -2.39 -0.02 0.33 16 45 H 0.09 0.75 8.14 -2.38 -0.02 0.73 16 46 H 0.08 0.81 7.22 -2.39 -0.02 0.79 16 47 H 0.06 1.17 6.44 -2.39 -0.02 1.15 16 48 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 49 H 0.03 0.46 7.24 -2.38 -0.02 0.44 16 50 H 0.06 1.78 5.42 -2.39 -0.01 1.77 16 51 H 0.09 1.83 7.40 -2.39 -0.02 1.82 16 52 H 0.10 2.39 8.14 -2.38 -0.02 2.37 16 53 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 54 H 0.07 2.04 6.45 -2.39 -0.02 2.03 16 55 H 0.08 3.30 4.80 -2.39 -0.01 3.29 16 Total: -1.00 -71.73 402.65 3.37 -68.36 By element: Atomic # 1 Polarization: 25.86 SS G_CDS: 0.90 Total: 26.76 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: 8.68 Total: -3.96 kcal Atomic # 7 Polarization: -128.25 SS G_CDS: -8.24 Total: -136.48 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.32 kcal Total: -71.73 3.37 -68.36 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417464793.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 228.146 kcal (2) G-P(sol) polarization free energy of solvation -71.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 156.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 159.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds