Wall clock time and date at job start Wed Apr 1 2020 04:52:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.09003 * 109.47454 * 2 1
4 4 C 1.50700 * 109.47201 * 120.00442 * 2 1 3
5 5 H 1.07999 * 120.00320 * 120.00222 * 4 2 1
6 6 C 1.37876 * 119.99720 * 299.99348 * 4 2 1
7 7 N 1.31516 * 120.00062 * 0.02562 * 6 4 2
8 8 Si 1.86804 * 119.99831 * 179.97438 * 6 4 2
9 9 H 1.48496 * 109.46863 * 60.00498 * 8 6 4
10 10 H 1.48496 * 109.47121 * 180.02562 * 8 6 4
11 11 H 1.48503 * 109.47189 * 300.00447 * 8 6 4
12 12 N 1.46907 * 109.46925 * 240.00420 * 2 1 3
13 13 C 1.46896 * 110.99745 * 183.95711 * 12 2 1
14 14 C 1.38574 * 111.00161 * 60.00024 * 12 2 1
15 15 N 1.31220 * 126.47240 * 21.50605 * 14 12 2
16 16 N 1.28532 * 109.85972 * 179.97438 * 15 14 12
17 17 C 1.30304 * 110.05091 * 359.72058 * 16 15 14
18 18 C 1.50702 * 126.34508 * 180.31362 * 17 16 15
19 19 C 1.53005 * 117.49914 * 8.89763 * 18 17 16
20 20 C 1.53002 * 117.49804 * 300.23877 * 18 17 16
21 21 N 1.36452 * 126.47473 * 201.48683 * 14 12 2
22 22 C 1.46502 * 127.13321 * 0.02562 * 21 14 12
23 23 C 1.53003 * 109.47290 * 86.88953 * 22 21 14
24 24 N 1.46896 * 112.90663 * 163.27508 * 23 22 21
25 25 C 1.46896 * 111.00490 * 304.90370 * 24 23 22
26 26 C 1.46902 * 110.99903 * 68.86340 * 24 23 22
27 27 C 1.53786 * 113.61058 * 32.02473 * 23 22 21
28 28 C 1.53781 * 87.07734 * 220.01905 * 27 23 22
29 29 C 1.53776 * 113.61172 * 294.53198 * 23 22 21
30 30 H 1.08998 * 109.46829 * 300.00129 * 1 2 3
31 31 H 1.09005 * 109.46910 * 59.99613 * 1 2 3
32 32 H 1.08996 * 109.47132 * 180.02562 * 1 2 3
33 33 H 0.96998 * 119.99746 * 180.02562 * 7 6 4
34 34 H 1.09000 * 109.47211 * 301.07419 * 13 12 2
35 35 H 1.08998 * 109.47821 * 61.07596 * 13 12 2
36 36 H 1.09001 * 109.47106 * 181.08189 * 13 12 2
37 37 H 1.08999 * 115.54604 * 154.56880 * 18 17 16
38 38 H 1.08995 * 117.49675 * 0.02562 * 19 18 17
39 39 H 1.09000 * 117.49731 * 145.02206 * 19 18 17
40 40 H 1.08995 * 117.49906 * 214.98247 * 20 18 17
41 41 H 1.09004 * 117.49736 * 359.97438 * 20 18 17
42 42 H 1.09001 * 109.47274 * 326.88865 * 22 21 14
43 43 H 1.09009 * 109.47005 * 206.89087 * 22 21 14
44 44 H 1.09010 * 109.46831 * 66.84125 * 25 24 23
45 45 H 1.08996 * 109.47331 * 186.84208 * 25 24 23
46 46 H 1.09000 * 109.47235 * 306.84696 * 25 24 23
47 47 H 1.09002 * 109.47315 * 59.99440 * 26 24 23
48 48 H 1.09002 * 109.47190 * 179.97438 * 26 24 23
49 49 H 1.08998 * 109.47043 * 299.99159 * 26 24 23
50 50 H 1.08993 * 113.61717 * 334.57191 * 27 23 22
51 51 H 1.09001 * 113.61225 * 105.47200 * 27 23 22
52 52 H 1.08999 * 113.61480 * 270.88309 * 28 27 23
53 53 H 1.09004 * 113.68916 * 139.99411 * 28 27 23
54 54 H 1.09009 * 113.61069 * 254.52803 * 29 23 22
55 55 H 1.09001 * 113.61861 * 25.34223 * 29 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0324 -0.7105 1.2304
5 1 2.6533 -1.5886 1.1313
6 6 1.6994 -0.2394 2.4827
7 7 0.9429 0.8296 2.6034
8 14 2.3215 -1.1205 4.0079
9 1 3.8064 -1.1211 4.0080
10 1 1.8262 -0.4208 5.2204
11 1 1.8259 -2.5204 4.0076
12 7 2.0197 -0.6924 -1.1996
13 6 3.4850 -0.7945 -1.1871
14 6 1.5753 -0.0640 -2.3519
15 7 1.1697 1.1796 -2.4553
16 7 0.8295 1.4284 -3.6695
17 6 1.0020 0.3688 -4.4079
18 6 0.7257 0.2548 -5.8850
19 6 0.3915 1.5414 -6.6426
20 6 -0.7062 0.5133 -6.3579
21 7 1.4773 -0.6214 -3.5935
22 6 1.8169 -1.9943 -3.9760
23 6 0.6080 -2.9026 -3.7425
24 7 0.7139 -4.1875 -4.4466
25 6 0.9383 -3.9834 -5.8839
26 6 1.7716 -5.0226 -3.8620
27 6 -0.7423 -2.1963 -3.9491
28 6 -1.2466 -2.9717 -2.7206
29 6 0.2193 -3.0420 -2.2612
30 1 -0.3633 0.5139 0.8900
31 1 -0.3633 0.5139 -0.8900
32 1 -0.3633 -1.0276 0.0005
33 1 0.7090 1.1612 3.4844
34 1 3.9184 0.2045 -1.1399
35 1 3.8019 -1.3696 -0.3171
36 1 3.8221 -1.2942 -2.0953
37 1 1.3008 -0.5055 -6.4135
38 1 0.3719 2.4703 -6.0727
39 1 0.7464 1.6274 -7.6696
40 1 -1.0731 -0.0767 -7.1977
41 1 -1.4486 0.7653 -5.6005
42 1 2.6551 -2.3427 -3.3726
43 1 2.0926 -2.0201 -5.0303
44 1 1.9200 -3.5354 -6.0383
45 1 0.8918 -4.9429 -6.3988
46 1 0.1699 -3.3202 -6.2811
47 1 1.5440 -5.2162 -2.8137
48 1 1.8282 -5.9679 -4.4017
49 1 2.7272 -4.5036 -3.9365
50 1 -0.6987 -1.1179 -3.7972
51 1 -1.2429 -2.4741 -4.8766
52 1 -1.6752 -3.9440 -2.9637
53 1 -1.8830 -2.3815 -2.0612
54 1 0.4949 -4.0027 -1.8260
55 1 0.5270 -2.1954 -1.6475
RHF calculation, no. of doubly occupied orbitals= 67
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001417464796.mol2 55
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:52:50
Heat of formation + Delta-G solvation = 154.443772 kcal
Electronic energy + Delta-G solvation = -34333.793056 eV
Core-core repulsion = 30409.769306 eV
Total energy + Delta-G solvation = -3924.023750 eV
No. of doubly occupied orbitals = 67
Molecular weight
(most abundant/longest-lived isotopes) = 347.238 amu
Computer time = 0.96 seconds
Orbital eigenvalues (eV)
-44.12756 -40.94265 -39.02942 -37.83525 -35.99565 -35.56548 -34.75695 -31.31311
-30.70322 -29.45921 -28.88129 -27.48986 -26.29873 -26.16044 -25.48088 -24.89437
-23.50698 -23.28890 -22.95267 -21.54819 -20.69678 -19.37495 -18.52782 -17.95544
-17.87225 -17.07526 -16.87293 -16.81025 -16.26100 -15.83353 -15.72154 -15.44793
-15.34642 -15.01442 -14.88675 -14.71268 -14.65810 -14.15631 -13.75901 -13.33099
-13.26012 -13.03196 -12.91498 -12.80981 -12.78058 -12.66287 -12.59050 -12.50734
-12.34015 -12.29185 -12.15965 -12.12693 -12.04430 -11.87692 -11.76504 -11.72336
-11.46457 -11.27016 -11.09195 -11.00594 -10.97450 -10.56217 -10.14448 -9.25517
-9.08791 -8.12009 -6.26985 0.79868 1.27954 1.45165 1.47017 1.54490
1.85100 2.41309 2.79844 2.97548 3.02339 3.19463 3.22708 3.34957
3.64980 3.69892 3.77057 3.93741 3.96811 4.00256 4.03094 4.09551
4.22613 4.27984 4.41799 4.49142 4.50580 4.51774 4.68623 4.72279
4.73776 4.79706 4.81024 4.83549 4.86923 4.92107 4.95321 4.97913
5.01142 5.04216 5.05311 5.11525 5.15135 5.19743 5.22669 5.33222
5.37392 5.42969 5.51578 5.58862 5.65990 5.90487 5.98160 6.08703
6.12821 6.17813 6.60737 6.82921 7.41877 7.87397 8.94655
Molecular weight = 347.24amu
Principal moments of inertia in cm(-1)
A = 0.011682 B = 0.004337 C = 0.003607
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2396.175242 B = 6454.120465 C = 7761.753326
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.110 4.110
2 C 0.245 3.755
3 H -0.026 1.026
4 C -0.523 4.523
5 H 0.074 0.926
6 C 0.014 3.986
7 N -0.919 5.919
8 Si 0.966 3.034
9 H -0.267 1.267
10 H -0.289 1.289
11 H -0.268 1.268
12 N -0.450 5.450
13 C 0.045 3.955
14 C 0.370 3.630
15 N -0.365 5.365
16 N -0.330 5.330
17 C 0.211 3.789
18 C -0.090 4.090
19 C -0.147 4.147
20 C -0.144 4.144
21 N -0.460 5.460
22 C 0.093 3.907
23 C 0.092 3.908
24 N -0.515 5.515
25 C 0.015 3.985
26 C 0.018 3.982
27 C -0.110 4.110
28 C -0.129 4.129
29 C -0.148 4.148
30 H 0.061 0.939
31 H 0.012 0.988
32 H 0.028 0.972
33 H 0.262 0.738
34 H 0.013 0.987
35 H 0.094 0.906
36 H 0.076 0.924
37 H 0.149 0.851
38 H 0.081 0.919
39 H 0.135 0.865
40 H 0.137 0.863
41 H 0.074 0.926
42 H 0.092 0.908
43 H 0.119 0.881
44 H 0.036 0.964
45 H 0.087 0.913
46 H 0.075 0.925
47 H 0.062 0.938
48 H 0.089 0.911
49 H 0.031 0.969
50 H 0.054 0.946
51 H 0.088 0.912
52 H 0.095 0.905
53 H 0.037 0.963
54 H 0.068 0.932
55 H 0.092 0.908
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.400 -12.245 -22.312 25.489
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.169 4.169
2 C 0.139 3.861
3 H -0.008 1.008
4 C -0.561 4.561
5 H 0.092 0.908
6 C -0.185 4.185
7 N -0.558 5.558
8 Si 0.791 3.209
9 H -0.192 1.192
10 H -0.215 1.215
11 H -0.193 1.193
12 N -0.175 5.175
13 C -0.103 4.103
14 C 0.013 3.987
15 N -0.209 5.209
16 N -0.169 5.169
17 C -0.057 4.057
18 C -0.110 4.110
19 C -0.184 4.184
20 C -0.182 4.182
21 N -0.154 5.154
22 C -0.031 4.031
23 C 0.001 3.999
24 N -0.238 5.238
25 C -0.133 4.133
26 C -0.129 4.129
27 C -0.148 4.148
28 C -0.167 4.167
29 C -0.186 4.186
30 H 0.079 0.921
31 H 0.031 0.969
32 H 0.048 0.952
33 H 0.071 0.929
34 H 0.032 0.968
35 H 0.113 0.887
36 H 0.094 0.906
37 H 0.166 0.834
38 H 0.100 0.900
39 H 0.153 0.847
40 H 0.155 0.845
41 H 0.092 0.908
42 H 0.110 0.890
43 H 0.136 0.864
44 H 0.055 0.945
45 H 0.105 0.895
46 H 0.094 0.906
47 H 0.081 0.919
48 H 0.107 0.893
49 H 0.050 0.950
50 H 0.073 0.927
51 H 0.107 0.893
52 H 0.113 0.887
53 H 0.056 0.944
54 H 0.087 0.913
55 H 0.111 0.889
Dipole moment (debyes) X Y Z Total
from point charges 0.363 -11.474 -21.677 24.529
hybrid contribution 1.475 0.087 1.313 1.977
sum 1.838 -11.387 -20.364 23.403
Atomic orbital electron populations
1.21550 0.97635 0.98367 0.99299 1.18891 0.92250 0.90610 0.84305
1.00784 1.21297 1.32068 1.12829 0.89947 0.90790 1.25762 0.95088
0.95567 1.02122 1.70077 1.37295 1.24165 1.24272 0.85484 0.78859
0.78600 0.77929 1.19165 1.21483 1.19278 1.59131 1.11478 1.48496
0.98392 1.22334 0.84221 1.00254 1.03447 1.22796 1.01463 0.88160
0.86293 1.74692 1.21460 1.12438 1.12262 1.73828 1.21123 1.24291
0.97656 1.24289 1.00974 0.84647 0.95825 1.20294 1.02775 1.04634
0.83340 1.23081 1.01645 0.92314 1.01391 1.23104 0.89501 1.02512
1.03091 1.46062 1.50223 1.12248 1.06848 1.22497 0.99984 0.77574
1.03082 1.22305 0.92627 0.89267 0.95689 1.62130 1.46372 1.11449
1.03841 1.22571 1.00500 1.03387 0.86815 1.22478 0.91785 0.97739
1.00947 1.22777 0.95247 0.97567 0.99246 1.22636 0.96159 1.00611
0.97257 1.23366 0.96684 1.03360 0.95141 0.92073 0.96903 0.95245
0.92883 0.96815 0.88737 0.90556 0.83394 0.90028 0.84726 0.84482
0.90764 0.88964 0.86363 0.94504 0.89463 0.90605 0.91949 0.89261
0.95036 0.92694 0.89327 0.88663 0.94425 0.91323 0.88948
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -5.98 8.53 71.98 0.61 -5.36 16
2 C 0.25 13.01 1.73 44.17 0.08 13.08 16
3 H -0.03 -1.59 7.91 -2.39 -0.02 -1.61 16
4 C -0.52 -28.12 7.94 25.60 0.20 -27.92 16
5 H 0.07 3.75 6.39 -2.91 -0.02 3.73 16
6 C 0.01 0.77 5.30 84.65 0.45 1.22 16
7 N -0.92 -54.33 11.32 21.45 0.24 -54.09 16
8 Si 0.97 43.01 29.54 68.60 2.03 45.03 16
9 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16
10 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16
11 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16
12 N -0.45 -19.44 2.79 -710.99 -1.98 -21.42 16
13 C 0.04 1.68 9.11 127.69 1.16 2.84 16
14 C 0.37 15.46 5.05 260.11 1.31 16.78 16
15 N -0.37 -17.59 10.07 -58.01 -0.58 -18.18 16
16 N -0.33 -13.83 11.79 -49.53 -0.58 -14.41 16
17 C 0.21 6.68 5.80 137.64 0.80 7.48 16
18 C -0.09 -1.80 5.98 -11.54 -0.07 -1.87 16
19 C -0.15 -2.62 10.15 30.62 0.31 -2.31 16
20 C -0.14 -2.45 10.24 30.62 0.31 -2.14 16
21 N -0.46 -14.65 1.82 -514.83 -0.94 -15.59 16
22 C 0.09 2.17 5.01 86.38 0.43 2.60 16
23 C 0.09 2.12 0.44 4.06 0.00 2.12 16
24 N -0.51 -8.99 4.81 -895.69 -4.31 -13.30 16
25 C 0.01 0.17 8.93 127.69 1.14 1.31 16
26 C 0.02 0.29 9.25 127.69 1.18 1.47 16
27 C -0.11 -2.84 6.86 31.12 0.21 -2.62 16
28 C -0.13 -3.73 7.99 31.12 0.25 -3.48 16
29 C -0.15 -4.52 7.06 31.12 0.22 -4.30 16
30 H 0.06 3.63 6.07 -2.39 -0.01 3.62 16
31 H 0.01 0.67 6.27 -2.38 -0.01 0.65 16
32 H 0.03 1.52 7.49 -2.39 -0.02 1.50 16
33 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16
34 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16
35 H 0.09 3.53 6.27 -2.39 -0.01 3.51 16
36 H 0.08 2.29 6.71 -2.39 -0.02 2.28 16
37 H 0.15 1.96 7.47 -2.39 -0.02 1.94 16
38 H 0.08 1.97 7.92 -2.39 -0.02 1.95 16
39 H 0.13 1.47 8.14 -2.39 -0.02 1.45 16
40 H 0.14 1.36 8.14 -2.39 -0.02 1.34 16
41 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16
42 H 0.09 2.21 6.28 -2.39 -0.01 2.20 16
43 H 0.12 1.98 5.24 -2.38 -0.01 1.97 16
44 H 0.04 0.36 6.57 -2.38 -0.02 0.34 16
45 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16
46 H 0.08 0.83 7.18 -2.39 -0.02 0.81 16
47 H 0.06 1.17 6.45 -2.39 -0.02 1.16 16
48 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16
49 H 0.03 0.47 7.28 -2.39 -0.02 0.45 16
50 H 0.05 1.77 5.46 -2.39 -0.01 1.76 16
51 H 0.09 1.87 7.39 -2.39 -0.02 1.86 16
52 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16
53 H 0.04 1.25 8.14 -2.38 -0.02 1.23 16
54 H 0.07 2.03 6.46 -2.38 -0.02 2.01 16
55 H 0.09 3.58 3.90 -2.39 -0.01 3.57 16
Total: -1.00 -71.92 407.01 3.38 -68.53
By element:
Atomic # 1 Polarization: 23.63 SS G_CDS: 0.89 Total: 24.52 kcal
Atomic # 6 Polarization: -9.72 SS G_CDS: 8.61 Total: -1.10 kcal
Atomic # 7 Polarization: -128.83 SS G_CDS: -8.15 Total: -136.98 kcal
Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.03 kcal
Total: -71.92 3.38 -68.53 kcal
The number of atoms in the molecule is 55
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001417464796.mol2 55
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 222.979 kcal
(2) G-P(sol) polarization free energy of solvation -71.919 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 151.060 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.384 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.535 kcal
(6) G-S(sol) free energy of system = (1) + (5) 154.444 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.96 seconds