Wall clock time and date at job start Wed Apr 1 2020 04:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46744 * 2 1 4 4 C 1.52996 * 109.47261 * 240.00085 * 2 1 3 5 5 N 1.46498 * 109.47481 * 63.65892 * 4 2 1 6 6 C 1.36746 * 127.13538 * 263.65716 * 5 4 2 7 7 C 1.50696 * 126.34967 * 0.05376 * 6 5 4 8 8 C 1.52997 * 117.49970 * 188.62010 * 7 6 5 9 9 C 1.53003 * 60.00344 * 252.51197 * 8 7 6 10 10 N 1.30299 * 107.30283 * 180.02562 * 6 5 4 11 11 N 1.28527 * 110.05252 * 359.73337 * 10 6 5 12 12 C 1.31218 * 109.86317 * 0.44379 * 11 10 6 13 13 N 1.38569 * 126.47467 * 179.81916 * 12 11 10 14 14 C 1.46901 * 111.00579 * 253.65923 * 13 12 11 15 15 C 1.50695 * 109.46882 * 59.24210 * 14 13 12 16 16 H 1.08000 * 120.00534 * 4.71398 * 15 14 13 17 17 C 1.37883 * 119.99586 * 184.71683 * 15 14 13 18 18 N 1.31514 * 120.00132 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99746 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47653 * 89.99605 * 19 17 15 21 21 H 1.48506 * 109.47001 * 209.99812 * 19 17 15 22 22 H 1.48500 * 109.47249 * 329.99516 * 19 17 15 23 23 C 1.46899 * 110.99837 * 17.61582 * 13 12 11 24 24 C 1.53001 * 109.47432 * 169.74373 * 23 13 12 25 25 C 1.52999 * 117.52117 * 116.76194 * 24 23 13 26 26 C 1.52997 * 117.50256 * 185.39524 * 24 23 13 27 27 N 1.46895 * 109.47037 * 119.99690 * 2 1 3 28 28 C 1.46898 * 110.99951 * 181.80485 * 27 2 1 29 29 C 1.46895 * 111.00240 * 305.76037 * 27 2 1 30 30 H 1.09004 * 109.46669 * 60.00128 * 1 2 3 31 31 H 1.08998 * 109.47243 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47377 * 300.00327 * 1 2 3 33 33 H 1.09002 * 109.47043 * 303.66152 * 4 2 1 34 34 H 1.09001 * 109.47343 * 183.65939 * 4 2 1 35 35 H 1.09003 * 115.54962 * 334.33575 * 7 6 5 36 36 H 1.08996 * 117.50351 * 0.02562 * 8 7 6 37 37 H 1.08998 * 117.49935 * 145.02484 * 8 7 6 38 38 H 1.09004 * 117.49737 * 252.51460 * 9 8 7 39 39 H 1.08990 * 117.51860 * 107.48002 * 9 8 7 40 40 H 1.08996 * 109.46906 * 179.25040 * 14 13 12 41 41 H 1.09004 * 109.46639 * 299.23996 * 14 13 12 42 42 H 0.96997 * 119.99597 * 180.02562 * 18 17 15 43 43 H 1.09002 * 109.47642 * 49.73855 * 23 13 12 44 44 H 1.09005 * 109.47213 * 289.74191 * 23 13 12 45 45 H 1.09006 * 115.54722 * 331.06131 * 24 23 13 46 46 H 1.09001 * 117.49839 * 214.97467 * 25 24 23 47 47 H 1.09001 * 117.50117 * 359.97438 * 25 24 23 48 48 H 1.09000 * 117.49637 * 359.96744 * 26 24 23 49 49 H 1.08998 * 117.50258 * 144.99794 * 26 24 23 50 50 H 1.08997 * 109.47651 * 61.34241 * 28 27 2 51 51 H 1.09003 * 109.47276 * 181.34692 * 28 27 2 52 52 H 1.09008 * 109.47252 * 301.34055 * 28 27 2 53 53 H 1.08996 * 109.47583 * 59.99695 * 29 27 2 54 54 H 1.09004 * 109.47601 * 180.02562 * 29 27 2 55 55 H 1.09006 * 109.47218 * 299.99837 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 1.6251 0.0184 -2.4438 6 6 0.5304 -0.2248 -3.2265 7 6 -0.4897 -1.3149 -3.0217 8 6 -1.5224 -1.5332 -4.1292 9 6 -1.9438 -0.8903 -2.8063 10 7 0.5326 0.6612 -4.1818 11 7 1.5432 1.4450 -4.0537 12 6 2.2510 1.0923 -3.0066 13 7 3.4116 1.6994 -2.5544 14 6 4.5883 0.8704 -2.8479 15 6 4.6885 0.6492 -4.3351 16 1 3.9975 1.1428 -5.0024 17 6 5.6625 -0.1836 -4.8441 18 7 6.5043 -0.7844 -4.0316 19 14 5.7873 -0.4573 -6.6877 20 1 6.6964 0.5574 -7.2785 21 1 6.3245 -1.8164 -6.9511 22 1 4.4400 -0.3305 -7.2992 23 6 3.5594 3.0444 -3.1263 24 6 4.7002 3.7775 -2.4178 25 6 5.9160 4.1731 -3.2582 26 6 4.9323 5.2447 -2.7839 27 7 2.0196 -0.6924 1.1994 28 6 3.4875 -0.6747 1.2552 29 6 1.4395 -0.1104 2.4170 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.6241 -1.7282 -1.2826 34 1 3.1281 -0.7784 -1.2170 35 1 -0.1367 -2.1936 -2.4818 36 1 -1.4638 -0.8887 -5.0062 37 1 -1.8490 -2.5558 -4.3184 38 1 -2.5476 -1.4901 -2.1251 39 1 -2.1625 0.1774 -2.8124 40 1 5.4865 1.3764 -2.4943 41 1 4.4904 -0.0908 -2.3433 42 1 7.1897 -1.3699 -4.3898 43 1 2.6315 3.6004 -2.9921 44 1 3.7842 2.9643 -4.1899 45 1 4.8777 3.4827 -1.3835 46 1 6.8933 4.1386 -2.7767 47 1 5.9036 3.9108 -4.3161 48 1 4.2726 5.6877 -3.5300 49 1 5.2625 5.9153 -1.9906 50 1 3.8369 0.3566 1.3039 51 1 3.8240 -1.2146 2.1403 52 1 3.8908 -1.1532 0.3626 53 1 0.3538 -0.1995 2.3808 54 1 1.8191 -0.6413 3.2901 55 1 1.7156 0.9420 2.4839 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434593110.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:59 Heat of formation + Delta-G solvation = 135.956545 kcal Electronic energy + Delta-G solvation = -33360.331991 eV Core-core repulsion = 29435.506575 eV Total energy + Delta-G solvation = -3924.825416 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.238 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.89357 -39.51832 -39.39940 -38.00599 -36.96944 -35.72286 -34.64338 -31.96650 -30.63499 -29.57873 -29.28412 -27.28364 -26.92262 -25.31375 -24.92766 -24.38410 -23.20217 -23.15686 -22.07497 -21.50334 -20.82099 -20.59934 -18.76416 -18.30634 -17.54701 -17.26448 -16.93782 -16.73279 -16.30140 -16.18950 -15.88852 -15.52360 -15.34763 -15.09682 -14.94925 -14.79566 -14.49267 -13.92045 -13.69497 -13.39758 -13.28872 -13.19872 -13.14898 -13.03344 -13.00910 -12.67485 -12.51505 -12.42645 -12.40906 -12.33724 -12.25110 -12.20416 -12.08829 -12.04633 -11.89746 -11.81126 -11.45419 -11.22933 -11.17558 -10.86045 -10.74957 -10.65538 -10.25496 -9.42008 -9.10832 -8.27600 -6.39643 0.89662 1.25573 1.27786 1.36858 1.39024 1.92092 2.30106 2.77613 2.95752 3.00997 3.02152 3.13158 3.42424 3.53502 3.67369 3.86657 3.92798 3.99466 4.04607 4.10925 4.13747 4.19702 4.22739 4.27202 4.33267 4.47665 4.50125 4.53635 4.56677 4.67661 4.71258 4.79894 4.80715 4.83231 4.83606 4.88504 4.91232 4.98745 5.03314 5.06124 5.06541 5.12997 5.15915 5.22558 5.23220 5.27794 5.31233 5.34872 5.35623 5.63395 5.71269 5.85017 5.96004 6.02161 6.02854 6.47132 6.73549 7.29409 7.91577 8.77123 Molecular weight = 347.24amu Principal moments of inertia in cm(-1) A = 0.007783 B = 0.004781 C = 0.003994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3596.731294 B = 5855.232022 C = 7008.104968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.082 3.918 3 H 0.027 0.973 4 C 0.121 3.879 5 N -0.466 5.466 6 C 0.206 3.794 7 C -0.096 4.096 8 C -0.152 4.152 9 C -0.132 4.132 10 N -0.328 5.328 11 N -0.367 5.367 12 C 0.391 3.609 13 N -0.456 5.456 14 C 0.218 3.782 15 C -0.550 4.550 16 H 0.046 0.954 17 C 0.030 3.970 18 N -0.912 5.912 19 Si 0.939 3.061 20 H -0.268 1.268 21 H -0.275 1.275 22 H -0.288 1.288 23 C 0.118 3.882 24 C -0.151 4.151 25 C -0.179 4.179 26 C -0.151 4.151 27 N -0.536 5.536 28 C 0.019 3.981 29 C 0.022 3.978 30 H 0.043 0.957 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.113 0.887 34 H 0.077 0.923 35 H 0.140 0.860 36 H 0.082 0.918 37 H 0.129 0.871 38 H 0.137 0.863 39 H 0.083 0.917 40 H 0.038 0.962 41 H 0.014 0.986 42 H 0.266 0.734 43 H 0.066 0.934 44 H 0.033 0.967 45 H 0.106 0.894 46 H 0.098 0.902 47 H 0.074 0.926 48 H 0.096 0.904 49 H 0.118 0.882 50 H 0.020 0.980 51 H 0.090 0.910 52 H 0.056 0.944 53 H 0.085 0.915 54 H 0.084 0.916 55 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.042 -0.107 13.255 17.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.028 4.028 3 H 0.045 0.955 4 C -0.002 4.002 5 N -0.160 5.160 6 C -0.062 4.062 7 C -0.116 4.116 8 C -0.189 4.189 9 C -0.170 4.170 10 N -0.167 5.167 11 N -0.210 5.210 12 C 0.033 3.967 13 N -0.180 5.180 14 C 0.093 3.907 15 C -0.589 4.589 16 H 0.064 0.936 17 C -0.171 4.171 18 N -0.551 5.551 19 Si 0.765 3.235 20 H -0.193 1.193 21 H -0.200 1.200 22 H -0.214 1.214 23 C -0.009 4.009 24 C -0.169 4.169 25 C -0.217 4.217 26 C -0.188 4.188 27 N -0.261 5.261 28 C -0.129 4.129 29 C -0.125 4.125 30 H 0.062 0.938 31 H 0.102 0.898 32 H 0.092 0.908 33 H 0.131 0.869 34 H 0.096 0.904 35 H 0.158 0.842 36 H 0.101 0.899 37 H 0.147 0.853 38 H 0.155 0.845 39 H 0.101 0.899 40 H 0.056 0.944 41 H 0.032 0.968 42 H 0.076 0.924 43 H 0.084 0.916 44 H 0.051 0.949 45 H 0.124 0.876 46 H 0.116 0.884 47 H 0.093 0.907 48 H 0.114 0.886 49 H 0.136 0.864 50 H 0.039 0.961 51 H 0.108 0.892 52 H 0.074 0.926 53 H 0.104 0.896 54 H 0.103 0.897 55 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -12.444 0.114 12.535 17.663 hybrid contribution 1.712 -0.069 -1.077 2.024 sum -10.732 0.045 11.458 15.700 Atomic orbital electron populations 1.21868 0.91999 1.03645 1.01839 1.21714 0.97337 0.94638 0.89086 0.95536 1.21953 1.01101 0.95792 0.81367 1.45980 1.20482 1.25544 1.23981 1.24210 0.90994 1.00319 0.90680 1.20268 0.87634 0.95406 1.08339 1.23063 0.99450 1.03570 0.92864 1.23099 0.92445 1.01725 0.99727 1.73687 1.16795 1.05143 1.21039 1.74488 1.05982 1.25780 1.14775 1.22510 0.95282 0.88858 0.90036 1.59350 0.99418 1.04167 1.55034 1.19499 0.86086 0.91026 0.94102 1.21794 1.15317 1.27965 0.93790 0.93629 1.25446 0.95238 0.95224 1.01159 1.69982 1.18640 1.30712 1.35787 0.85851 0.77696 0.78064 0.81873 1.19337 1.19989 1.21433 1.21300 0.97521 0.85699 0.96387 1.22037 0.97325 0.97883 0.99693 1.22932 0.94859 1.04241 0.99628 1.23034 1.01827 0.90331 1.03612 1.62021 1.07656 1.54356 1.02070 1.22471 0.87179 1.00082 1.03142 1.22525 1.01417 0.97158 0.91404 0.93783 0.89843 0.90767 0.86905 0.90431 0.84236 0.89928 0.85261 0.84483 0.89866 0.94417 0.96795 0.92448 0.91603 0.94894 0.87588 0.88367 0.90745 0.88602 0.86362 0.96111 0.89152 0.92552 0.89605 0.89685 0.96140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 8.18 71.98 0.59 -2.29 16 2 C 0.08 2.14 2.36 44.92 0.11 2.24 16 3 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 4 C 0.12 3.80 5.40 86.38 0.47 4.26 16 5 N -0.47 -17.80 2.47 -514.86 -1.27 -19.07 16 6 C 0.21 7.56 6.42 137.63 0.88 8.44 16 7 C -0.10 -2.40 5.40 -11.54 -0.06 -2.46 16 8 C -0.15 -3.31 10.15 30.59 0.31 -3.00 16 9 C -0.13 -2.47 10.03 30.60 0.31 -2.16 16 10 N -0.33 -14.62 11.79 -49.53 -0.58 -15.21 16 11 N -0.37 -17.94 11.15 -58.01 -0.65 -18.58 16 12 C 0.39 17.64 5.82 260.12 1.51 19.16 16 13 N -0.46 -20.16 4.74 -710.37 -3.37 -23.52 16 14 C 0.22 10.99 4.92 85.56 0.42 11.41 16 15 C -0.55 -31.00 7.69 25.60 0.20 -30.81 16 16 H 0.05 2.76 6.29 -2.91 -0.02 2.75 16 17 C 0.03 1.70 5.46 84.66 0.46 2.17 16 18 N -0.91 -52.38 13.29 21.45 0.28 -52.09 16 19 Si 0.94 46.15 29.54 68.60 2.03 48.18 16 20 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 21 H -0.27 -12.94 7.11 99.48 0.71 -12.23 16 22 H -0.29 -14.87 7.11 99.48 0.71 -14.16 16 23 C 0.12 4.93 4.49 86.30 0.39 5.32 16 24 C -0.15 -5.25 4.74 -10.79 -0.05 -5.30 16 25 C -0.18 -6.06 10.18 30.59 0.31 -5.74 16 26 C -0.15 -4.14 10.25 30.59 0.31 -3.83 16 27 N -0.54 -11.96 4.89 -923.29 -4.51 -16.47 16 28 C 0.02 0.46 9.29 127.69 1.19 1.65 16 29 C 0.02 0.38 9.05 127.69 1.16 1.54 16 30 H 0.04 1.11 6.38 -2.38 -0.02 1.10 16 31 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.07 1.33 6.33 -2.39 -0.02 1.31 16 33 H 0.11 3.05 7.25 -2.39 -0.02 3.03 16 34 H 0.08 2.85 4.31 -2.39 -0.01 2.84 16 35 H 0.14 2.86 7.43 -2.39 -0.02 2.85 16 36 H 0.08 2.27 7.92 -2.39 -0.02 2.25 16 37 H 0.13 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.14 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.04 1.98 7.15 -2.39 -0.02 1.97 16 41 H 0.01 0.75 6.26 -2.39 -0.01 0.74 16 42 H 0.27 14.52 8.31 -92.71 -0.77 13.75 16 43 H 0.07 2.67 8.01 -2.39 -0.02 2.65 16 44 H 0.03 1.58 6.26 -2.38 -0.01 1.56 16 45 H 0.11 3.63 8.14 -2.38 -0.02 3.61 16 46 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 47 H 0.07 2.85 8.03 -2.39 -0.02 2.83 16 48 H 0.10 2.55 8.14 -2.39 -0.02 2.53 16 49 H 0.12 2.58 8.14 -2.39 -0.02 2.56 16 50 H 0.02 0.53 8.14 -2.39 -0.02 0.51 16 51 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 52 H 0.06 1.56 6.20 -2.38 -0.01 1.54 16 53 H 0.09 1.23 6.21 -2.39 -0.01 1.21 16 54 H 0.08 1.18 8.13 -2.38 -0.02 1.16 16 55 H 0.02 0.37 8.14 -2.38 -0.02 0.35 16 Total: -1.00 -70.28 427.18 1.30 -68.98 By element: Atomic # 1 Polarization: 26.33 SS G_CDS: 0.87 Total: 27.20 kcal Atomic # 6 Polarization: -7.91 SS G_CDS: 8.50 Total: 0.59 kcal Atomic # 7 Polarization: -134.86 SS G_CDS: -10.10 Total: -144.95 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Total: -70.28 1.30 -68.98 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434593110.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 204.941 kcal (2) G-P(sol) polarization free energy of solvation -70.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds