Wall clock time and date at job start Wed Apr 1 2020 04:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08995 * 109.47815 * 2 1 4 4 C 1.52998 * 109.47189 * 120.00861 * 2 1 3 5 5 N 1.46500 * 109.47447 * 188.56757 * 4 2 1 6 6 C 1.36740 * 127.13576 * 275.35917 * 5 4 2 7 7 C 1.50697 * 126.34877 * 0.03586 * 6 5 4 8 8 C 1.52997 * 117.50154 * 199.90317 * 7 6 5 9 9 C 1.52994 * 117.50542 * 131.23712 * 7 6 5 10 10 N 1.30294 * 107.30267 * 180.22125 * 6 5 4 11 11 N 1.28516 * 110.05803 * 359.77472 * 10 6 5 12 12 C 1.31218 * 109.86211 * 359.97438 * 11 10 6 13 13 N 1.38583 * 126.47678 * 179.97438 * 12 11 10 14 14 C 1.46903 * 110.99880 * 136.65284 * 13 12 11 15 15 C 1.50699 * 109.46877 * 180.92820 * 14 13 12 16 16 H 1.07999 * 119.99985 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99699 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00267 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99816 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47257 * 89.99729 * 19 17 15 21 21 H 1.48500 * 109.47359 * 209.99805 * 19 17 15 22 22 H 1.48505 * 109.47380 * 329.99692 * 19 17 15 23 23 C 1.46893 * 110.99872 * 12.70086 * 13 12 11 24 24 C 1.53003 * 109.47114 * 293.95337 * 23 13 12 25 25 C 1.53001 * 117.52069 * 116.28585 * 24 23 13 26 26 C 1.53001 * 60.00245 * 107.47820 * 25 24 23 27 27 N 1.46907 * 109.47057 * 240.00236 * 2 1 3 28 28 C 1.46903 * 110.99584 * 17.19124 * 27 2 1 29 29 C 1.46897 * 111.00136 * 141.14588 * 27 2 1 30 30 H 1.09004 * 109.46937 * 299.99518 * 1 2 3 31 31 H 1.08998 * 109.47360 * 59.99065 * 1 2 3 32 32 H 1.09004 * 109.47788 * 179.97438 * 1 2 3 33 33 H 1.08990 * 109.47564 * 68.56509 * 4 2 1 34 34 H 1.09000 * 109.46810 * 308.56005 * 4 2 1 35 35 H 1.09007 * 115.54868 * 345.56209 * 7 6 5 36 36 H 1.09005 * 117.49704 * 359.97438 * 8 7 6 37 37 H 1.08998 * 117.50422 * 145.01609 * 8 7 6 38 38 H 1.08996 * 117.50045 * 214.98342 * 9 7 6 39 39 H 1.09002 * 117.49564 * 359.97438 * 9 7 6 40 40 H 1.09005 * 109.47132 * 300.92553 * 14 13 12 41 41 H 1.08997 * 109.47000 * 60.92668 * 14 13 12 42 42 H 0.97003 * 119.99522 * 179.97438 * 18 17 15 43 43 H 1.09000 * 109.47556 * 173.95460 * 23 13 12 44 44 H 1.09002 * 109.47482 * 53.95563 * 23 13 12 45 45 H 1.09001 * 115.55033 * 330.58020 * 24 23 13 46 46 H 1.08988 * 117.49971 * 214.97216 * 25 24 23 47 47 H 1.09002 * 117.49346 * 359.97438 * 25 24 23 48 48 H 1.08992 * 117.50400 * 252.51100 * 26 25 24 49 49 H 1.09001 * 117.49499 * 107.48510 * 26 25 24 50 50 H 1.08998 * 109.47074 * 60.00363 * 28 27 2 51 51 H 1.09001 * 109.46506 * 180.02562 * 28 27 2 52 52 H 1.09000 * 109.46751 * 299.99802 * 28 27 2 53 53 H 1.08995 * 109.47517 * 70.24197 * 29 27 2 54 54 H 1.08999 * 109.47323 * 190.24935 * 29 27 2 55 55 H 1.09006 * 109.46915 * 310.24475 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7214 1.2491 5 7 3.4904 -0.5458 1.3565 6 6 4.4598 -1.2941 0.7481 7 6 4.2372 -2.4678 -0.1705 8 6 5.4022 -3.4392 -0.3706 9 6 5.0010 -2.4823 -1.4961 10 7 5.6117 -0.8066 1.1130 11 7 5.4374 0.1938 1.9007 12 6 4.1543 0.4004 2.0817 13 7 3.5816 1.3888 2.8663 14 6 2.4451 2.0151 2.1777 15 6 1.8638 3.0976 3.0502 16 1 2.2951 3.2997 4.0195 17 6 0.7806 3.8292 2.6115 18 7 0.2550 3.5826 1.4314 19 14 0.0595 5.1705 3.6933 20 1 0.7346 6.4601 3.3992 21 1 -1.3944 5.2992 3.4195 22 1 0.2649 4.8186 5.1213 23 6 4.5788 2.3939 3.2578 24 6 5.6155 1.7510 4.1814 25 6 7.0606 1.6836 3.6834 26 6 6.6791 2.6646 4.7938 27 7 2.0196 -0.6925 -1.1995 28 6 0.9598 -0.8079 -2.2102 29 6 3.2020 -0.0176 -1.7512 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5140 -0.8899 32 1 -0.3635 -1.0277 -0.0005 33 1 1.8070 -1.7836 1.1758 34 1 1.5571 -0.3036 2.1325 35 1 3.2299 -2.8843 -0.1655 36 1 6.3298 -3.2291 0.1618 37 1 5.1614 -4.4946 -0.4977 38 1 4.4963 -2.9086 -2.3631 39 1 5.6642 -1.6427 -1.7040 40 1 2.7847 2.4496 1.2374 41 1 1.6830 1.2625 1.9760 42 1 -0.5073 4.0971 1.1230 43 1 4.0840 3.2121 3.7810 44 1 5.0750 2.7795 2.3672 45 1 5.2535 0.9220 4.7895 46 1 7.6493 0.8102 3.9638 47 1 7.2729 2.0969 2.6974 48 1 6.6405 3.7235 4.5385 49 1 7.0168 2.4366 5.8047 50 1 0.6200 0.1877 -2.4956 51 1 1.3490 -1.3247 -3.0874 52 1 0.1239 -1.3727 -1.7972 53 1 4.0498 -0.1651 -1.0823 54 1 3.4349 -0.4354 -2.7307 55 1 2.9985 1.0487 -1.8502 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434593115.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:02 Heat of formation + Delta-G solvation = 156.677997 kcal Electronic energy + Delta-G solvation = -34035.913132 eV Core-core repulsion = 30111.986265 eV Total energy + Delta-G solvation = -3923.926867 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.238 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.91070 -39.56685 -39.41973 -37.86239 -37.07908 -35.46503 -34.67024 -32.38648 -30.76249 -29.33149 -29.02523 -27.55727 -27.05040 -25.29989 -24.71780 -23.91930 -23.08159 -23.06166 -22.37389 -21.48630 -20.71500 -20.57540 -18.78176 -18.15607 -17.36893 -17.17554 -16.91399 -16.88298 -16.48973 -15.88234 -15.75734 -15.53141 -15.39263 -15.27486 -14.83835 -14.47606 -14.36193 -13.98315 -13.73673 -13.57048 -13.43003 -13.19810 -13.03475 -12.88786 -12.82993 -12.77520 -12.40861 -12.38674 -12.28216 -12.20154 -12.18334 -12.12061 -12.05130 -11.91610 -11.73894 -11.41277 -11.34593 -11.19858 -11.04841 -10.96344 -10.73128 -10.52777 -10.32930 -9.32303 -8.82352 -8.26648 -6.35898 0.94270 1.40226 1.42151 1.47894 1.52556 1.96809 2.36311 2.85321 2.88466 3.07247 3.13902 3.19412 3.46203 3.73264 3.85022 3.86536 3.96987 4.04083 4.13643 4.18278 4.20318 4.23507 4.27196 4.28913 4.36280 4.43542 4.47578 4.49565 4.60175 4.64707 4.69347 4.76872 4.86042 4.87408 4.89559 4.93106 4.95351 4.98896 5.03601 5.06999 5.07552 5.13904 5.17242 5.21034 5.29323 5.35576 5.37165 5.41266 5.42723 5.58098 5.82030 5.93217 5.97165 6.00758 6.10701 6.55661 6.72324 7.32066 7.99801 8.82998 Molecular weight = 347.24amu Principal moments of inertia in cm(-1) A = 0.008613 B = 0.005453 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3250.306576 B = 5133.406410 C = 7890.482734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.071 3.929 3 H 0.027 0.973 4 C 0.123 3.877 5 N -0.477 5.477 6 C 0.218 3.782 7 C -0.070 4.070 8 C -0.152 4.152 9 C -0.138 4.138 10 N -0.329 5.329 11 N -0.339 5.339 12 C 0.352 3.648 13 N -0.452 5.452 14 C 0.207 3.793 15 C -0.540 4.540 16 H 0.067 0.933 17 C 0.023 3.977 18 N -0.910 5.910 19 Si 0.960 3.040 20 H -0.279 1.279 21 H -0.280 1.280 22 H -0.266 1.266 23 C 0.118 3.882 24 C -0.145 4.145 25 C -0.137 4.137 26 C -0.167 4.167 27 N -0.520 5.520 28 C 0.021 3.979 29 C 0.032 3.968 30 H 0.047 0.953 31 H 0.062 0.938 32 H 0.090 0.910 33 H 0.121 0.879 34 H 0.087 0.913 35 H 0.138 0.862 36 H 0.083 0.917 37 H 0.127 0.873 38 H 0.125 0.875 39 H 0.076 0.924 40 H -0.045 1.045 41 H 0.057 0.943 42 H 0.265 0.735 43 H 0.090 0.910 44 H 0.018 0.982 45 H 0.088 0.912 46 H 0.088 0.912 47 H 0.075 0.925 48 H 0.095 0.905 49 H 0.110 0.890 50 H 0.012 0.988 51 H 0.085 0.915 52 H 0.089 0.911 53 H 0.055 0.945 54 H 0.092 0.908 55 H -0.011 1.011 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.243 -12.383 -5.875 13.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.039 4.039 3 H 0.045 0.955 4 C 0.000 4.000 5 N -0.171 5.171 6 C -0.049 4.049 7 C -0.091 4.091 8 C -0.190 4.190 9 C -0.177 4.177 10 N -0.167 5.167 11 N -0.184 5.184 12 C -0.005 4.005 13 N -0.175 5.175 14 C 0.083 3.917 15 C -0.578 4.578 16 H 0.085 0.915 17 C -0.178 4.178 18 N -0.548 5.548 19 Si 0.786 3.214 20 H -0.204 1.204 21 H -0.205 1.205 22 H -0.191 1.191 23 C -0.009 4.009 24 C -0.164 4.164 25 C -0.174 4.174 26 C -0.205 4.205 27 N -0.244 5.244 28 C -0.126 4.126 29 C -0.117 4.117 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.109 0.891 33 H 0.139 0.861 34 H 0.105 0.895 35 H 0.156 0.844 36 H 0.102 0.898 37 H 0.145 0.855 38 H 0.144 0.856 39 H 0.095 0.905 40 H -0.027 1.027 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.108 0.892 44 H 0.036 0.964 45 H 0.106 0.894 46 H 0.106 0.894 47 H 0.094 0.906 48 H 0.113 0.887 49 H 0.128 0.872 50 H 0.031 0.969 51 H 0.103 0.897 52 H 0.108 0.892 53 H 0.073 0.927 54 H 0.111 0.889 55 H 0.008 0.992 Dipole moment (debyes) X Y Z Total from point charges 3.513 -12.794 -5.273 14.277 hybrid contribution -1.879 2.443 -0.355 3.103 sum 1.634 -10.350 -5.628 11.894 Atomic orbital electron populations 1.21913 0.92165 1.02969 1.02527 1.22005 0.96517 0.94849 0.90509 0.95456 1.22208 0.75247 1.03620 0.98944 1.46139 1.08984 1.24792 1.37224 1.24058 0.83483 0.98051 0.99334 1.20108 0.99368 0.92962 0.96656 1.23126 0.97268 0.96969 1.01649 1.22989 1.01500 1.01431 0.91748 1.73756 1.22381 1.07995 1.12586 1.74592 1.11066 1.14515 1.18232 1.23220 0.88974 0.94106 0.94198 1.58926 1.10184 1.12233 1.36149 1.19993 0.86502 0.94483 0.90769 1.21336 1.15037 1.17943 1.03476 0.91500 1.25637 0.96601 0.99176 0.96345 1.70031 1.23923 1.41491 1.19403 0.85511 0.77508 0.79023 0.79392 1.20443 1.20521 1.19056 1.21485 0.90251 0.92478 0.96674 1.21900 0.90527 1.01868 1.02124 1.22578 0.96698 1.00629 0.97536 1.23111 1.01889 0.96775 0.98692 1.62143 1.06709 1.49794 1.05762 1.22625 0.95092 0.99825 0.95100 1.22564 0.93727 0.94401 1.00991 0.93394 0.91900 0.89100 0.86069 0.89470 0.84411 0.89801 0.85526 0.85647 0.90529 1.02728 0.92568 0.92571 0.89200 0.96404 0.89376 0.89355 0.90624 0.88661 0.87155 0.96903 0.89654 0.89224 0.92654 0.88938 0.99207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.98 7.88 71.98 0.57 -3.42 16 2 C 0.07 2.29 2.02 44.91 0.09 2.39 16 3 H 0.03 1.20 5.40 -2.39 -0.01 1.19 16 4 C 0.12 4.00 4.62 86.38 0.40 4.39 16 5 N -0.48 -17.73 2.54 -514.86 -1.31 -19.04 16 6 C 0.22 7.45 4.95 137.64 0.68 8.14 16 7 C -0.07 -1.70 4.33 -11.54 -0.05 -1.75 16 8 C -0.15 -3.05 10.15 30.62 0.31 -2.74 16 9 C -0.14 -2.76 8.42 30.62 0.26 -2.50 16 10 N -0.33 -13.17 11.93 -49.54 -0.59 -13.76 16 11 N -0.34 -14.77 9.02 -58.00 -0.52 -15.29 16 12 C 0.35 15.35 7.10 260.11 1.85 17.19 16 13 N -0.45 -20.75 4.67 -710.36 -3.32 -24.07 16 14 C 0.21 10.37 3.33 85.56 0.29 10.66 16 15 C -0.54 -28.53 8.35 25.60 0.21 -28.32 16 16 H 0.07 3.51 6.38 -2.91 -0.02 3.49 16 17 C 0.02 1.22 5.46 84.65 0.46 1.68 16 18 N -0.91 -48.98 13.29 21.45 0.28 -48.70 16 19 Si 0.96 41.56 29.54 68.60 2.03 43.59 16 20 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 21 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 22 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 23 C 0.12 5.11 4.73 86.31 0.41 5.52 16 24 C -0.15 -5.40 4.70 -10.79 -0.05 -5.45 16 25 C -0.14 -4.64 8.69 30.59 0.27 -4.37 16 26 C -0.17 -4.96 10.25 30.60 0.31 -4.65 16 27 N -0.52 -13.47 3.72 -923.28 -3.43 -16.90 16 28 C 0.02 0.43 8.31 127.69 1.06 1.49 16 29 C 0.03 0.93 7.64 127.69 0.98 1.91 16 30 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 31 H 0.06 1.81 6.45 -2.39 -0.02 1.80 16 32 H 0.09 1.96 7.23 -2.38 -0.02 1.95 16 33 H 0.12 3.13 7.57 -2.39 -0.02 3.11 16 34 H 0.09 3.23 6.19 -2.39 -0.01 3.22 16 35 H 0.14 2.91 7.46 -2.38 -0.02 2.90 16 36 H 0.08 2.05 8.02 -2.38 -0.02 2.03 16 37 H 0.13 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.13 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.08 1.86 7.98 -2.39 -0.02 1.84 16 40 H -0.04 -2.60 7.54 -2.38 -0.02 -2.62 16 41 H 0.06 2.78 3.56 -2.39 -0.01 2.77 16 42 H 0.27 13.59 8.31 -92.71 -0.77 12.82 16 43 H 0.09 4.02 5.87 -2.39 -0.01 4.00 16 44 H 0.02 0.82 7.81 -2.39 -0.02 0.80 16 45 H 0.09 3.45 8.14 -2.39 -0.02 3.43 16 46 H 0.09 2.87 8.14 -2.39 -0.02 2.85 16 47 H 0.08 2.76 8.03 -2.39 -0.02 2.75 16 48 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 49 H 0.11 2.76 8.14 -2.39 -0.02 2.74 16 50 H 0.01 0.30 7.24 -2.39 -0.02 0.28 16 51 H 0.08 1.36 8.02 -2.39 -0.02 1.34 16 52 H 0.09 1.54 6.34 -2.39 -0.02 1.53 16 53 H 0.05 1.86 4.00 -2.39 -0.01 1.85 16 54 H 0.09 2.11 7.89 -2.39 -0.02 2.09 16 55 H -0.01 -0.38 7.80 -2.38 -0.02 -0.40 16 Total: -1.00 -63.33 409.05 2.06 -61.27 By element: Atomic # 1 Polarization: 31.84 SS G_CDS: 0.88 Total: 32.73 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: 8.04 Total: 0.17 kcal Atomic # 7 Polarization: -128.87 SS G_CDS: -8.89 Total: -137.76 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.59 kcal Total: -63.33 2.06 -61.27 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434593115.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 217.947 kcal (2) G-P(sol) polarization free energy of solvation -63.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 154.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 156.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds