Wall clock time and date at job start Wed Apr 1 2020 05:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35981 * 116.99735 * 2 1 4 4 N 1.30319 * 120.82947 * 359.97438 * 3 2 1 5 5 S 1.69669 * 107.66431 * 179.78418 * 4 3 2 6 6 C 1.77235 * 95.30161 * 0.30504 * 5 4 3 7 7 C 1.47021 * 127.75694 * 179.97438 * 6 5 4 8 8 O 1.21647 * 119.99665 * 172.21944 * 7 6 5 9 9 N 1.34767 * 120.00586 * 352.22604 * 7 6 5 10 10 C 1.46504 * 119.99834 * 353.92104 * 9 7 6 11 11 C 1.46498 * 120.00294 * 174.19507 * 9 7 6 12 12 H 1.08994 * 109.47077 * 359.97438 * 11 9 7 13 13 C 1.53000 * 109.46885 * 119.99908 * 11 9 7 14 14 C 1.50693 * 109.47171 * 239.99605 * 11 9 7 15 15 H 1.07998 * 120.00525 * 0.02562 * 14 11 9 16 16 C 1.37882 * 120.00232 * 179.97438 * 14 11 9 17 17 N 1.31522 * 119.99673 * 0.02562 * 16 14 11 18 18 Si 1.86800 * 120.00384 * 180.02562 * 16 14 11 19 19 H 1.48497 * 109.47072 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47292 * 119.99860 * 18 16 14 21 21 H 1.48504 * 109.46883 * 240.00083 * 18 16 14 22 22 C 1.37669 * 120.82618 * 179.97438 * 3 2 1 23 23 Br 1.89094 * 122.89955 * 0.02562 * 22 3 2 24 24 H 1.09002 * 109.47162 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47310 * 299.99778 * 1 2 3 26 26 H 1.09002 * 109.47798 * 59.99759 * 1 2 3 27 27 H 1.08994 * 109.47241 * 84.85845 * 10 9 7 28 28 H 1.09000 * 109.47000 * 204.86354 * 10 9 7 29 29 H 1.09008 * 109.46918 * 324.85610 * 10 9 7 30 30 H 1.08996 * 109.47482 * 299.99608 * 13 11 9 31 31 H 1.09002 * 109.47775 * 60.00414 * 13 11 9 32 32 H 1.09008 * 109.47224 * 180.02562 * 13 11 9 33 33 H 0.96998 * 119.99569 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2116 0.0000 4 7 1.3523 2.3147 -0.0005 5 16 2.4466 3.6113 0.0058 6 6 3.9009 2.5983 -0.0002 7 6 5.3039 3.0375 0.0009 8 8 6.1963 2.2224 0.1389 9 7 5.6015 4.3432 -0.1509 10 6 4.5391 5.3067 -0.4497 11 6 6.9882 4.7981 -0.0230 12 1 7.6316 3.9457 0.1946 13 6 7.4330 5.4524 -1.3325 14 6 7.0867 5.8003 1.0981 15 1 6.2047 6.0710 1.6595 16 6 8.3030 6.3709 1.4079 17 7 9.3773 6.0409 0.7245 18 14 8.4253 7.6127 2.7980 19 1 7.0843 7.8105 3.4044 20 1 9.3665 7.1090 3.8303 21 1 8.9222 8.9062 2.2639 22 6 3.4198 1.3036 0.0005 23 35 4.5506 -0.2120 0.0006 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3635 0.5139 -0.8899 27 1 4.0676 5.6273 0.4792 28 1 4.9654 6.1714 -0.9582 29 1 3.7939 4.8381 -1.0926 30 1 7.3619 4.7276 -2.1434 31 1 6.7896 6.3051 -1.5497 32 1 8.4650 5.7906 -1.2375 33 1 10.2330 6.4421 0.9427 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001443571560.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:05 Heat of formation + Delta-G solvation = -4.308511 kcal Electronic energy + Delta-G solvation = -20443.088467 eV Core-core repulsion = 17064.729246 eV Total energy + Delta-G solvation = -3378.359221 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 347.993 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.29844 -39.24476 -36.65504 -35.48995 -33.10590 -32.16630 -30.29445 -29.06256 -28.13336 -26.56579 -25.32196 -24.67463 -22.19111 -20.24738 -18.88560 -18.24753 -17.66327 -16.65627 -16.43197 -15.83572 -15.62894 -14.90600 -14.72049 -14.56364 -13.61380 -13.58326 -13.20682 -12.78417 -12.70603 -12.29960 -12.06368 -11.70885 -11.64633 -11.30245 -11.14026 -11.02907 -10.91704 -10.80679 -10.65058 -10.33712 -10.26895 -10.00440 -9.38912 -9.31991 -9.20126 -8.51714 -8.38272 -7.80605 -6.15675 -4.24546 0.02548 0.79484 1.39574 1.99468 2.02019 2.81956 3.22133 3.30504 3.32682 3.43574 3.62896 4.32699 4.45977 4.88248 4.96617 4.99889 5.04721 5.16581 5.35098 5.35735 5.75231 5.87638 6.07818 6.64920 6.70555 6.80388 6.92031 7.20241 7.33018 7.60747 7.89166 8.03633 8.26279 8.58221 8.81348 9.42358 10.89668 Molecular weight = 347.99amu Principal moments of inertia in cm(-1) A = 0.018520 B = 0.003951 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.536340 B = 7084.601334 C = 7919.782168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.288 6.288 3 C 0.327 3.673 4 N -0.538 5.538 5 S 0.339 5.661 6 C -0.138 4.138 7 C 0.568 3.432 8 O -0.501 6.501 9 N -0.574 5.574 10 C 0.067 3.933 11 C 0.260 3.740 12 H 0.069 0.931 13 C -0.149 4.149 14 C -0.530 4.530 15 H 0.062 0.938 16 C 0.067 3.933 17 N -0.885 5.885 18 Si 0.900 3.100 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.283 1.283 22 C -0.132 4.132 23 Br 0.033 6.967 24 H 0.102 0.898 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.098 0.902 29 H 0.055 0.945 30 H 0.015 0.985 31 H 0.032 0.968 32 H 0.097 0.903 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.803 -8.341 -3.576 18.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.194 6.194 3 C 0.112 3.888 4 N -0.378 5.378 5 S 0.490 5.510 6 C -0.273 4.273 7 C 0.351 3.649 8 O -0.377 6.377 9 N -0.306 5.306 10 C -0.079 4.079 11 C 0.161 3.839 12 H 0.087 0.913 13 C -0.207 4.207 14 C -0.569 4.569 15 H 0.080 0.920 16 C -0.136 4.136 17 N -0.523 5.523 18 Si 0.727 3.273 19 H -0.197 1.197 20 H -0.208 1.208 21 H -0.209 1.209 22 C -0.232 4.232 23 Br 0.117 6.883 24 H 0.120 0.880 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.116 0.884 29 H 0.073 0.927 30 H 0.034 0.966 31 H 0.051 0.949 32 H 0.115 0.885 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -16.093 -7.967 -3.502 18.295 hybrid contribution 0.393 -0.213 0.768 0.889 sum -15.700 -8.181 -2.734 17.913 Atomic orbital electron populations 1.22974 0.76751 1.03543 1.02537 1.86366 1.22840 1.22210 1.87957 1.19276 0.88385 0.85878 0.95263 1.76362 1.28314 1.01978 1.31174 1.85425 0.88325 1.09769 1.67510 1.26520 1.01410 0.95960 1.03408 1.16650 0.84376 0.83884 0.80009 1.90881 1.45754 1.51819 1.49250 1.48218 1.11449 1.04581 1.66341 1.21868 0.90212 0.95023 1.00826 1.19122 0.74531 0.96139 0.94112 0.91294 1.22121 1.04553 0.98196 0.95842 1.21317 0.94923 1.24371 1.16243 0.92002 1.24880 0.95439 0.96719 0.96559 1.69884 0.99438 1.43088 1.39876 0.86416 0.78240 0.80765 0.81852 1.19731 1.20848 1.20873 1.21240 0.92137 0.94895 1.14933 1.96762 1.62899 1.31487 1.97152 0.87983 0.92129 0.92124 0.91999 0.88356 0.92689 0.96619 0.94906 0.88462 0.92579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 10.43 101.05 1.05 1.39 16 2 O -0.29 -3.77 10.09 -19.68 -0.20 -3.97 16 3 C 0.33 4.84 7.36 -18.40 -0.14 4.70 16 4 N -0.54 -7.63 11.02 29.21 0.32 -7.31 16 5 S 0.34 4.61 19.26 -107.50 -2.07 2.54 16 6 C -0.14 -2.35 6.38 -36.07 -0.23 -2.58 16 7 C 0.57 11.57 7.64 -12.71 -0.10 11.47 16 8 O -0.50 -11.67 14.50 5.24 0.08 -11.59 16 9 N -0.57 -11.63 2.75 -176.69 -0.49 -12.11 16 10 C 0.07 1.05 8.13 59.85 0.49 1.53 16 11 C 0.26 6.25 2.62 -69.09 -0.18 6.07 16 12 H 0.07 1.92 6.91 -51.93 -0.36 1.56 16 13 C -0.15 -3.34 8.95 37.16 0.33 -3.00 16 14 C -0.53 -13.54 8.37 -34.44 -0.29 -13.83 16 15 H 0.06 1.55 7.66 -52.49 -0.40 1.15 16 16 C 0.07 1.75 5.30 -17.81 -0.09 1.65 16 17 N -0.89 -24.00 11.32 55.43 0.63 -23.37 16 18 Si 0.90 20.26 29.54 -169.99 -5.02 15.24 16 19 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 22 C -0.13 -2.18 6.30 -39.83 -0.25 -2.43 16 23 Br 0.03 0.54 31.69 -68.01 -2.16 -1.61 16 24 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 26 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 27 H 0.06 0.90 7.65 -51.93 -0.40 0.50 16 28 H 0.10 1.50 6.42 -51.93 -0.33 1.17 16 29 H 0.06 0.72 5.21 -31.24 -0.16 0.56 16 30 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.03 0.66 6.65 -51.93 -0.35 0.32 16 32 H 0.10 2.42 6.07 -51.92 -0.32 2.10 16 33 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 310.41 15.07 4.68 4.68 Total: -1.00 -29.15 310.41 -6.77 -35.92 By element: Atomic # 1 Polarization: -0.25 SS G_CDS: -3.14 Total: -3.39 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: 0.60 Total: 4.98 kcal Atomic # 7 Polarization: -43.25 SS G_CDS: 0.46 Total: -42.79 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: -0.12 Total: -15.56 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Atomic # 16 Polarization: 4.61 SS G_CDS: -2.07 Total: 2.54 kcal Atomic # 35 Polarization: 0.54 SS G_CDS: -2.16 Total: -1.61 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.15 -6.77 -35.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001443571560.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.615 kcal (2) G-P(sol) polarization free energy of solvation -29.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds